mRNA_Ecto-sp13_S_contig6074.16725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6074.16725.1
Unique NamemRNA_Ecto-sp13_S_contig6074.16725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A6H5KVF1_9PHAE (Magnesium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVF1_9PHAE)

HSP 1 Score: 465 bits (1197), Expect = 5.580e-162
Identity = 241/250 (96.40%), Postives = 244/250 (97.60%), Query Frame = 1
Query:    1 QAVILSNEVLLFPTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            +AVILSNEVLLFPTKPDVLSIVPAVQEKI+LGI AVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLIKSLHRLLPLKNELDELK TLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDV ELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQ FWQVTGGIYGCI+L IAGTV LCRRLSLL
Sbjct:  209 KAVILSNEVLLFPTKPDVLSIVPAVQEKIKLGINAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLIKSLHRLLPLKNELDELKGTLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVNELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQAFWQVTGGIYGCILLFIAGTVTLCRRLSLL 458          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A835ZID1_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID1_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.300e-71
Identity = 127/251 (50.60%), Postives = 170/251 (67.73%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            +AVI ++EV L  P+  + ++I  AV++++      +PFE   +ECCL  +C       + + P LR VL   K +  SL K L +LLPLKN+LDE+  TL  V +C+N+VL N+ DMA MYLTD +     +D   H+++E++FENYL+QVEL++SD+K+ QNE+ NTEEIV+IELDV+RN IL+ ELLLSIS F VALGAL TG+FGMNL S  EE P MFW VTG I+  I  SIA T   C+R  LL
Sbjct:   33 RAVITASEVYLGNPSHKEAIAIAEAVRQQLMTS--NMPFEHIALECCLSQICASQSAQLQVLRPYLRQVLHGLKAAGGSLQKRLDQLLPLKNQLDEMHTTLTAVARCLNDVLTNNADMAQMYLTDAQRHKKRKD-SDHEDVELIFENYLMQVELISSDIKDDQNEITNTEEIVDIELDVIRNRILQVELLLSISAFMVALGALWTGIFGMNLKSHLEEHPHMFWVVTGAIFAWIFTSIATTRWFCKRAGLL 280          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A2V3IKQ0_9FLOR (Magnesium transporter n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKQ0_9FLOR)

HSP 1 Score: 149 bits (377), Expect = 8.170e-40
Identity = 88/250 (35.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKN----SLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCR 735
            + ++L++ VL F PT P V   +P +Q ++      +PFE   +E  L  V          + P L  VLD+  T+++    ++   + RLLPL+N L+E    +      +NEVL++DEDM+LMY++  +     R + QH E+EM+ ENY+ Q++ + S+V      V+ TE   +I LD +RN +LR ++ L++   +V +G LV GVFGMNLLSG EE P  FW V+G  +   ++   G +A  R
Sbjct:   85 RVIVLADRVLAFDPTNPAVEYFLPKLQRRLDAPSHPMPFEFRAIEAVLVEVVSTFNARIGTLIPSLDLVLDTLSTTQDFGGDTVQNCMDRLLPLENALNEFGAKVAQTRAALNEVLVSDEDMSLMYISTFKETGIRRRIDQHDEVEMMLENYMKQIDTVHSEVTSALQAVKATENATQIRLDAMRNRVLRLDIFLNLGAVSVGVGGLVAGVFGMNLLSGIEEDPAAFWIVSGISFLTSIMFFRGILAFLR 334          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A7S2UYK5_9STRA (Magnesium transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.190e-39
Identity = 83/197 (42.13%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  181 VEPRLRTVLDSFKTSKN-------SLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            + P+  TVL++   +KN          + L  L PLK+ L E++ T+  V + + +VL++DEDMA MYLT        R +  H E+E +FENYL+QVE +A DV+E Q  ++N EE +E+ELDV+RN +LR EL+LS+    VA GAL TG+FGMNLLS  E    MF+ V+  I+G +  +++  V  CR   +L
Sbjct:    2 IRPQCETVLNAL--NKNFQGAGWKQFQRRLGELRPLKSHLSEVQSTVQDVRRALYDVLVSDEDMAAMYLTSKRDTGKDRAISDHTEVEEMFENYLMQVEFVAHDVQEYQKSIKNIEEGIELELDVVRNTMLRMELMLSVGSIVVACGALFTGLFGMNLLSHLENNASMFYVVSLFIFGGMAFALSKVVMYCRTEGIL 196          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: M1VGU3_CYAM1 (Magnesium transporter n=2 Tax=cellular organisms TaxID=131567 RepID=M1VGU3_CYAM1)

HSP 1 Score: 147 bits (371), Expect = 7.680e-38
Identity = 98/281 (34.88%), Postives = 149/281 (53.02%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKIRLGIK--AVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFK------------------TSKNSL----------IKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            +AV+ ++ V LF P +P V + +P +  ++ L     A+PFE   +E  L  VC  L+   R + P + ++L +                    T+ NS           +  L RLL  KN+L+EL+     +   +NEVL++DEDM+ MYL+        R + QH+E+EM+FENYL Q++ L S++      +++TE+ V+I+LD LRN ILR +L+L +   +++ GALV  +FGMNL S  EE    F  VTGG+ G   L   G  A CR   LL
Sbjct:  193 RAVVEADRVTLFDPEQPAVEAFLPQLHARLALSSPRPALPFELRALESILVDVCNSLMREMRYLVPGIESLLRALSSDDVAGATASAAAAADASTTPNSTAGDASSIPPDVIMLDRLLGAKNKLNELQNRATQLRNALNEVLLSDEDMSEMYLSTKAESGHRRRVDQHEEVEMMFENYLKQIDSLVSEIASRTQAIQSTEDFVQIKLDALRNRILRLDLVLKLGSVSLSSGALVAAIFGMNLHSTLEESQLAFLSVTGGLVGISGLVFLGGAAYCRYKRLL 473          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A4D9D8F3_9STRA (Magnesium transporter n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.140e-37
Identity = 104/295 (35.25%), Postives = 156/295 (52.88%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKI------------RLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLI---KSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYL--TDNECKSTARDLHQ-------------------------------------HQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVT--GGIYGCIVLSIA 714
            + VI  +E++LF P       ++P +Q+++                   PFE   +E  L  VC  + E  + V P++  +L   K    +L    K L  LLPL+N+L EL  T+  + K +NEVL++DEDM +MYL  T +     ++  HQ                                     HQE+EM+FENYL+Q+E   ++++E+Q+ +RNTE+ VEI+LD+LRN ILRFEL+L+I    V++G LVTG+FGMNLLSG E  P  F+ VT  GG+    +L++A
Sbjct:  314 RCVIRRDELMLFDPYNQGARGLIPLLQQQLATVAALTSAAGKNAPASLSPFELLSLEAVLASVCHQVHERLQVVSPQIMRILGDLKFRHGTLSTFPKLLDELLPLRNDLSELHYTVQELRKALNEVLLSDEDMEMMYLSCTSHSHYHRSKLHHQQHSXXXXXXXXXXXXXXXXXXXATKPHRGXXGNADDSHQEVEMMFENYLMQLEWADTEIREVQHAIRNTEDTVEIQLDLLRNRILRFELVLNIVTSVVSVGCLVTGLFGMNLLSGLEAHPSAFYIVTVAGGVTMAAILALA 608          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A5J4YRP2_PORPP (Magnesium transporter n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRP2_PORPP)

HSP 1 Score: 145 bits (366), Expect = 1.200e-37
Identity = 83/252 (32.94%), Postives = 142/252 (56.35%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTS------KNSLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCR 735
            +A++ ++ +LLF P  P V + +P +Q +++     +PFE   +E  L +VC  L   A  + P + +VLD+  ++       +S+  SL RLLPL+N L+E    +  +   +++VL +DEDM+ MYLT        R   +H+E+EM+ ENY+  ++ + +++      V++TE + +I LD +RN +LR E+ L+I+  ++A G  V   FGMNLLSG EE P  F+ ++       VL   G +A  +
Sbjct:  144 RAILQADRLLLFEPMHPSVQAFIPELQARLQAESSLLPFELRALEVVLINVCASLQRHASTLSPAVDSVLDNLSSTGVSSFGSDSVQTSLDRLLPLENALNEFLNKVTMIRTAIDDVLSSDEDMSAMYLTSVIQSGHRRRRDEHEEVEMMLENYMKVIDSVHNEISATLRAVKSTENVTQIRLDAMRNRVLRLEVYLNIATVSIASGGTVAACFGMNLLSGLEESPHAFYAISLASVSTCVLMFRGILAFLK 395          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A1X6P9F5_PORUM (Magnesium transporter n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9F5_PORUM)

HSP 1 Score: 144 bits (362), Expect = 2.950e-37
Identity = 84/226 (37.17%), Postives = 127/226 (56.19%), Query Frame = 1
Query:   16 SNEVLLF-PTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKN----SLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVT 678
            ++ VLLF P  P V ++ P ++ ++      +PFE   +E  L  VC  +      ++P+++  LD            + + L +LLPL+  L+EL  ++  V   +NEVLM+DEDM+ MYL+        R + +H EIEM+ E YL QV+ +A ++  L   V+ TE + +I LD  RN ILR E+ L++   +VA  A   G+FGMNLLSGWEE P  FW V+
Sbjct:  128 ASRVLLFDPHHPAVAALTPRLRARLIDAAHPLPFEMRALEAVLVDVCCGIRAEVGRLKPKVQAALDVMSKDGEFGGRGVTEGLDQLLPLEMGLNELTGSVGMVRTALNEVLMSDEDMSDMYLSWKSATGEERGVDEHDEIEMMVEGYLKQVDAVAYELGRLLRAVKTTENVTQIRLDASRNRILRLEVFLNLGAVSVASAACFAGLFGMNLLSGWEEDPHAFWMVS 353          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A7J7IG99_9RHOD (Magnesium transporter n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG99_9RHOD)

HSP 1 Score: 140 bits (352), Expect = 4.190e-35
Identity = 93/281 (33.10%), Postives = 148/281 (52.67%), Query Frame = 1
Query:    1 QAVILSNEVLLF-PTKPDVLSIVPAVQEKIRLGIK--AVPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSK------------------NSLIKSLH----------RLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            +AV+ ++ V LF P +P V + +P +  ++        +PFE   +E  L  VC  L+   R + P + ++L +  +                    N+  ++ H          RLL  KN+L+EL+     +   +NEVL++DEDM+ MYL+        R + QH+E+EM+FENYL QV+ + S++    + +++TE+ V+I+LD LRN ILR +L+L +   +++ GALV  +FGMNL S  EE    F  +TGG+ G   L   G  A CR   LL
Sbjct:  194 RAVVEADRVTLFDPEQPAVEAFLPQLHARLATSNMRPVLPFELRALESILVDVCNGLMREMRYLVPAIESMLHALSSDTTAGTATXXXXXXXXXXXXNTGAEASHSIPPDAIMLDRLLGAKNKLNELQNRATQLRSALNEVLLSDEDMSEMYLSIKAESGHRRRVDQHEEVEMMFENYLKQVDSMVSEILSRAHAIQSTEDFVQIKLDALRNRILRLDLVLKLGSVSLSSGALVAAIFGMNLHSTLEESELAFLSITGGLVGLSGLVFLGGAAYCRYKRLL 474          
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Match: A0A482SVM6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVM6_9ARCH)

HSP 1 Score: 139 bits (349), Expect = 1.010e-34
Identity = 91/227 (40.09%), Postives = 127/227 (55.95%), Query Frame = 1
Query:  106 VPFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFKTSKNSLI---KSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQ---------HQEIEMLFENYLLQVELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL 750
            +PFE  VME  L  V   L    R +EP + + L+  +     L         LLPLKN+LDEL++    V + + EVL +DEDMALM L+            Q            +EMLFENYL ++E +A++V ++ +EVRNTEE V+++LD+LRN IL+FEL LSI  F  + GALVTG+FGMNLL+ +E    +F+ VT  I   +     G +   +R  LL
Sbjct:  240 IPFEHIVMETALSLVSISLATKIRGLEPLVASTLNGLRAESRGLDVLQTQADELLPLKNQLDELRKKAREVKRALLEVLQSDEDMALMCLSVPSXXXXXXPTKQIGSSVGAAATMSLEMLFENYLNEIEWIAAEVDDILDEVRNTEENVDLQLDLLRNRILKFELKLSIITFLTSCGALVTGLFGMNLLNHFERSGVVFYAVTAMIIFGMFSGFRGFLRYAKRDKLL 466          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6074.16725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVF1_9PHAE5.580e-16296.40Magnesium transporter n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZID1_9STRA4.300e-7150.60Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
A0A2V3IKQ0_9FLOR8.170e-4035.20Magnesium transporter n=1 Tax=Gracilariopsis chord... [more]
A0A7S2UYK5_9STRA1.190e-3942.13Magnesium transporter n=1 Tax=Fibrocapsa japonica ... [more]
M1VGU3_CYAM17.680e-3834.88Magnesium transporter n=2 Tax=cellular organisms T... [more]
A0A4D9D8F3_9STRA1.140e-3735.25Magnesium transporter n=1 Tax=Nannochloropsis sali... [more]
A0A5J4YRP2_PORPP1.200e-3732.94Magnesium transporter n=1 Tax=Porphyridium purpure... [more]
A0A1X6P9F5_PORUM2.950e-3737.17Magnesium transporter n=1 Tax=Porphyra umbilicalis... [more]
A0A7J7IG99_9RHOD4.190e-3533.10Magnesium transporter n=1 Tax=Cyanidiococcus yangm... [more]
A0A482SVM6_9ARCH1.010e-3440.09Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6074contigEcto-sp13_S_contig6074:377..5124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score471.5
Seed ortholog evalue2.5e-130
Seed eggNOG ortholog2880.D8LBW7
Preferred nameMRS2
Model size753
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
Exons7
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2662@1,KOG2662@2759
Ec32 ortholog descriptionsimilar to putative mitochondrial rna splicing protein OR magnesium ion transporter Mrs2
Ec32 orthologEc-20_003550.1
EC2.7.11.1,3.1.1.17
Cds size753
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6074.16725.1prot_Ecto-sp13_S_contig6074.16725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6074 377..5124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.1223865-CDS-Ecto-sp13_S_contig6074:376..4601681463846.1223865-CDS-Ecto-sp13_S_contig6074:376..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 377..460 +
1681463846.1449144-CDS-Ecto-sp13_S_contig6074:1369..14861681463846.1449144-CDS-Ecto-sp13_S_contig6074:1369..1486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 1370..1486 +
1681463846.1601496-CDS-Ecto-sp13_S_contig6074:2066..21711681463846.1601496-CDS-Ecto-sp13_S_contig6074:2066..2171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 2067..2171 +
1681463846.1706352-CDS-Ecto-sp13_S_contig6074:2655..27991681463846.1706352-CDS-Ecto-sp13_S_contig6074:2655..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 2656..2799 +
1681463846.1855419-CDS-Ecto-sp13_S_contig6074:3481..35391681463846.1855419-CDS-Ecto-sp13_S_contig6074:3481..3539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 3482..3539 +
1681463846.1955805-CDS-Ecto-sp13_S_contig6074:4521..46261681463846.1955805-CDS-Ecto-sp13_S_contig6074:4521..4626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 4522..4626 +
1681463846.2051277-CDS-Ecto-sp13_S_contig6074:4984..51241681463846.2051277-CDS-Ecto-sp13_S_contig6074:4984..5124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6074 4985..5124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6074.16725.1

>prot_Ecto-sp13_S_contig6074.16725.1 ID=prot_Ecto-sp13_S_contig6074.16725.1|Name=mRNA_Ecto-sp13_S_contig6074.16725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
QAVILSNEVLLFPTKPDVLSIVPAVQEKIRLGIKAVPFEQTVMECCLKHV
CKDLLESARNVEPRLRTVLDSFKTSKNSLIKSLHRLLPLKNELDELKETL
VTVCKCMNEVLMNDEDMALMYLTDNECKSTARDLHQHQEIEMLFENYLLQ
VELLASDVKELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALG
ALVTGVFGMNLLSGWEEKPQMFWQVTGGIYGCIVLSIAGTVALCRRLSLL
*
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mRNA from alignment at Ecto-sp13_S_contig6074:377..5124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6074.16725.1 ID=mRNA_Ecto-sp13_S_contig6074.16725.1|Name=mRNA_Ecto-sp13_S_contig6074.16725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6074:377..5124+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTGTAATCTTGTCTAACGAGGTGCTGCTATTTCCGACCAAGCCTGA CGTGCTTTCGATCGTCCCTGCCGTCCAAGAAAAGGTACAGCGAGCAACGC GGGGAATATAGGCGAAAAGTGCAAAGTGTTTGTATCCTGAGGCATTTCAC GCCTAGCGAAAAACACTGGTAGCAAAGTCAGGAAAAAGTACCGAAAGTGG TCAACCGCTTTGCAGCTTGAGATCTTTCATGAATGGCGGAAATCACCAAC AGAAGCAACGCTAATGATCTTGGAACCAATTAATCATGTAGCCAAGAAGG TGAAAGAGTGCTGTTTCTGCTGTCTGTTATCTGAGCAGGTAACGTTTCTT AAAAACATTTATGCATATGCGTGTGTACCTAGACGTGGTTTTGATACACT TGAGGTGCATCTCTAATCCCGTGAGAGCTAAAAACATTTGCTGGTTGTTT CTACGATACAACGGTTCCTCGTGCTTGTATGGGCAGAACCAACTGCTTGA ACAGATGCGAGTACCGCGTTTTTGTTCCACAGTCCGCAAACTGCGGTCTT GTTTTTTTCATTTTGGCATTTTCCGCGTGCGCCTGTGCTCGTCATTTTCT GTCCGAAACTACTGCATACAACGATTGCTTAAAGCCATTCGTGTGGTATG AATGCCGTTGCGTCTTGTTACCTGGCATCAGCGGCGCTACCCGACTAGCC AATGAAACAGCGCCATTATTTCCGGGACAGAAGTCGAACCGCAGTCTTCC TTGCGATTGTTGCTTTGTGGCGTTTGGCTTCTTGACGGTATTTACTCCAT CACGCGATCCAACTGGCCGAGAAAAATTGATTACATATCGCATCCGGCGG GTGCGTGTCTGGCTGTTTATTTTACTCGCATCGGTCGCGCTGACCGATAA CCGATCAAAAGCGCTTCGGTTTTCTCACCAGAGCAAAACTTAGCGACATT TTGCCTGAGTTTTCGTGTCTATCTATGTGTTTCCTTTATTCAGATAAGAC TGGGGATAAAAGCGGTCCCTTTCGAACAGACGGTCATGGAATGCTGCCTC AAGCACGTGTGCAAAGACCTCCTGGAGAGCGCTCGGAACGTCGAGCCCAG GTTAAGAACGGTGAGCTTTTCCGTCTCACGGTTACGATGGCGATTTCTCC TCTGTGCTGCAAGAATCGTATTCATTTTTTCCAACGCCCAAGTTTTCCCT CTACCGAGACTCACGAAGGTTAAGATTTGGTGCTATTTTTTCGCCTTGTG TGCTACGGCGCTATAGCTTTGATGACCATTTTAAAGGCTTCAATGTTTTC CGATGCGCCTGCCTTTACTGGTAGAGCCTACTTTTTCGCCCCTTCACACG GTGCGACGGTACGGACGCTTTCGCACTCAGAGCGCTACTTCAGGTGGACA AGGTTATGTTTGTCGACATCATCGGGCATACGTTTACAAGTAATGCTGTT AACCTCTCAACCGCGACGCTTTGTTTTGTGGGTGTGGCAGAGAGAAAACG ATGGGACCCTGTGGCTTGGCGTATTCGGACGCCAATTTCTTGTACAGCTC GCCGATAGGAAGGGACGACTGCAGCTATAACCCCAAAACCGCCCCTCCCC CACACCCTAGATCCTACCCTGATCCCGACCCAACCGATGCAAAGGTGTTG TCCCTGCGCTGCTCTACCGCTACCCCTTCTCGACCCCAAGGTGCTGGACT CCTTCAAGACTTCGAAGAACTCGCTGATTAAGTCGCTGCACCGACTGCTA CCCCTTAAGAACGAGCTCGACGAGCTGAAGGAGACTCTCGTGACGGTGAG GGATAAGAGCTGATGAGTGAGGGGTACGCCGCAAGCATTGCCCCGATAAA TGTGCTGCCGGTGTTGGTACAGTGGTGGTTTTGTTGTTGTGCTGTTGCTG CTGCTGCTGCTGCTGCTGCTGCTGTCGTTGCTGCTGCTCGTGCTGTTGCT GCTGCTGTTGTTCTTGATGTTCGCAGGTGCTCTGTGTTTGTGGTGTCCCG AGTTGTAGCAAGCAGGGTTCACGTGCTGGTTCTTGTGTTGAACTGCATAC CATGGTGTACAACTAACTACCGAAGACAGACCAAGTGAAGCAGTTCGGGC CACCTCTTCACGCCTCAAGGTCCTCGGTACAACAGCAAGTGTTGACCACG GCGTTTTATGAAAGTGTTGAATTCACGATGAAGACGCCGCTCTCTCTTGT TGTATCTCGAAACAAGGCGTGGCCTCCCCCCCCCCCTCCCTCACACAAGC ACTGACGGGGCAACATCTGGAAACGACAGGTGTGCAAGTGCATGAACGAG GTGTTGATGAACGACGAGGACATGGCTCTCATGTACCTGACCGACAACGA GTGCAAGTCCACCGCCAGAGACTTGCACCAGCACCAGGAGATCGAGATGC TCTTCGAGAACTACCTGCTGCAGGTGACCCTCGCCCCCGTGTCTCTGGGC GCTTTACCGCAGCTGCAGGCAACACGAGGAGATTGATACGCTGTTCGAGG AAATTGCTTTTTGCAGAGGCAGCACTACGAGATAGTTTTATTCCACACCG AAGTAATCACCGGTAATTTTTGTGCTTTGGATACACGTTGATCCTGGCCG CAGCCCTAATGTTGACGCTGAGGTGCTAGTCGGAGATCTCCTCTTGCAGG CAGCGGGCCCCAGCCCAAAGCTGGCCATCCAAAGCCTATCGTAGCCACCT TAAGGTGGTAGACATAAAGAGTGCAAGGGGCGGCTAGTGTTATTTTTTCT ATTATACCTTGTGGGCGGTTAGCTACAATAGCCCTTGGTTGTGGGGCTCA TCTTTATGGGTGGGTCTTTACGGAATACCGGTATGGAGACAGCCGGTAGA GGTTAGAGCGATTCCAGGTACAACCACAACGGGGCCAACCACAGCGAAAG CGAACACCTCAGAGTAGGTAAGTAGCAGGTAGGATTGACTCATTCGGTCG AGGAGTGCAAATGGTGAGTCGGACTGGTGTGATTATCTGTTCAAGCTTTC AGGCACGGCAATACAGGTGGCGAAGTCAGTTTATCTGCCGGCTTCATTGT TTCCAAAGCGTCGGTGCTTTTGTGTCGAATTTTTTCTAATTGGTCGACAA CGCAGGTGGAGCTGTTGGCATCAGACGTCAAGGAACTTCAAAACGAAGTT CGTAACACGGAAGGTGAGCCGAATCGTTTTTTGTCCGAAACATTCGTTGA CTACCGCCGGGGCCAGCAGATTAATTCAACGTAAATGTGGAGACCACCTT TATAAGGTACAATCTTCCCAACGTCTGTCGAGGACGATTTTCTGTTCTCA CAAAAATGTTTTTGAGAATGTGCCTTTGCCGGGTGATGGATGCTACAGGC GCTTGCACGGCCAAAGCCGACTCGGGGTTGCGTTTGTTTCCACGGCGTCA TTTGATTTCCGCTAGACGCTTGCCGAAAAGCCCGCATGCCTTTTTCTCGA GGAAGTTGTGGCGACGGTGCGGACAGGGATGTGGTATGGTAGGCTACGAA GGTTACCGCGGGTTCATGGGACTCAGGGTAGCGTGTGTTACGGTTATAAC CCCGAAACTATTGTCAACGTCGTCAAAGTCAATTTAACAAAAATGGTATG TGGGAGTTTTTTTGGTCTCCTCCTCGTTGCCTGGGCATTCGAGCGGCTCG CTTACTTGCCGGGGTGTTCGGTATCAAACGGCTCACGACTCCCTGTAGCG GATTTCGACTTATCTCCAATCTCCAAGGCCTCTACACACCAACACTGAAC TCGTTTGCTGGCATGTCAGATGGGAAAACAGCCCACTAGGGTCAGGCTAC GGTAGAAACTGATCGAGCCGACCTGAAAAGCGATCCTTCTTACAAACGGC GCAAGTTCGTGCCCTCAATCACTTTGCGCCTCACAGGTAACATATTGCTT CTTTAAAATTGGCCCTGCAGCAGACCGGTTTTAGACGGTGTTCGCAGCGA AACCAACCCGGGATTGCGTGTGAGTGAGCGTTCGCACGTGCGTACAATCG TACAAGTCTTCGCGAAAGCACACGGCATGCGCGGGCAAGCAGTGTTGCGC GGGCAAGCAGTGCACCTAACCAGGCCTTGGTGCCGGCGTCTCGTGATGCC CTCATTCGTCTCCGCACCTAAATTGTTCATGTCCCTTCGTGGCAGAAATC GTGGAGATCGAGCTGGACGTGTTGCGGAACAACATCCTTCGTTTCGAGCT GCTCCTCAGCATCAGCGGCTTTACCGTTGCCCTCGGGGCCCTCGTCACCG GTGAGCTAGTTTTTTTTCGGTTGTTGGGGATAATTCAACAATCGGGCCTT GCTCGTCAAATGTTTTGAAGTCGCTGAACCGCCGAGTGGACGACCTACCC TAAGAACCTAAGGACCTACAAACGACCATACAAAAGAGGTGTTTTGGTGG TCGACGTCGTGCCATGGCTTGCTTCCGTAAATTTTTGCTGCCGGAGAGTT TGTTTGCTTTTTATGGATATTTTTCCCCATGTTGTTTTCATGCATAGTGC CATCTGCTGGACCGGCCTAACATAACCAACTACACCACCACCACCACCAA CAACAACAACAATAACAACAACAATAACAACAACACCAACAACCGTGTCT TGTCGCAGGTGTTTTTGGCATGAACCTCCTTAGCGGGTGGGAAGAGAAGC CGCAAATGTTCTGGCAGGTGACGGGCGGCATCTACGGCTGCATCGTGCTG TCCATCGCCGGCACCGTGGCCTTATGTCGGCGCTTGAGCCTCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6074:377..5124+

>mRNA_Ecto-sp13_S_contig6074.16725.1 ID=mRNA_Ecto-sp13_S_contig6074.16725.1|Name=mRNA_Ecto-sp13_S_contig6074.16725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6074:377..5124+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTGTAATCTTGTCTAACGAGGTGCTGCTATTTCCGACCAAGCCTGA
CGTGCTTTCGATCGTCCCTGCCGTCCAAGAAAAGATAAGACTGGGGATAA
AAGCGGTCCCTTTCGAACAGACGGTCATGGAATGCTGCCTCAAGCACGTG
TGCAAAGACCTCCTGGAGAGCGCTCGGAACGTCGAGCCCAGGTTAAGAAC
GGTGCTGGACTCCTTCAAGACTTCGAAGAACTCGCTGATTAAGTCGCTGC
ACCGACTGCTACCCCTTAAGAACGAGCTCGACGAGCTGAAGGAGACTCTC
GTGACGGTGTGCAAGTGCATGAACGAGGTGTTGATGAACGACGAGGACAT
GGCTCTCATGTACCTGACCGACAACGAGTGCAAGTCCACCGCCAGAGACT
TGCACCAGCACCAGGAGATCGAGATGCTCTTCGAGAACTACCTGCTGCAG
GTGGAGCTGTTGGCATCAGACGTCAAGGAACTTCAAAACGAAGTTCGTAA
CACGGAAGAAATCGTGGAGATCGAGCTGGACGTGTTGCGGAACAACATCC
TTCGTTTCGAGCTGCTCCTCAGCATCAGCGGCTTTACCGTTGCCCTCGGG
GCCCTCGTCACCGGTGTTTTTGGCATGAACCTCCTTAGCGGGTGGGAAGA
GAAGCCGCAAATGTTCTGGCAGGTGACGGGCGGCATCTACGGCTGCATCG
TGCTGTCCATCGCCGGCACCGTGGCCTTATGTCGGCGCTTGAGCCTCTTG
TAG
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