mRNA_Ecto-sp13_S_contig60711.16722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE) HSP 1 Score: 157 bits (398), Expect = 5.000e-43 Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
GRATFSGLFIKE GEGFICRFVAFNSAGVGVAWTDSEPFDVG+GEPYAIALSTSVGRM+GGSTFDI PVISIQDKGGNVV
Sbjct: 115 GRATFSGLFIKEAGEGFICRFVAFNSAGVGVAWTDSEPFDVGVGEPYAIALSTSVGRMNGGSTFDIPPVISIQDKGGNVV 194
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI) HSP 1 Score: 144 bits (362), Expect = 3.620e-38 Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQ 219
GRATFSGLFIKE GEGFICRFVAFNSAGVGVAWTDSEPFDVG+GEPYAIALSTSVGRMDGGSTFD PVISIQ
Sbjct: 115 GRATFSGLFIKEAGEGFICRFVAFNSAGVGVAWTDSEPFDVGVGEPYAIALSTSVGRMDGGSTFDTPPVISIQ 187
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A067BMX7_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BMX7_SAPPC) HSP 1 Score: 60.5 bits (145), Expect = 1.750e-9 Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G T +GL I G+ FV+ S GV T S PFD+ +G P+ IAL+T++G GGS F P +SI DKGGNVV
Sbjct: 93 GVITCTGLSIDLVAAGYTLTFVSL-SFGV---QTTSHPFDILLGLPHTIALTTALGATTGGSPFAPQPSVSIVDKGGNVV 168
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A485KCD1_9STRA (Aste57867_5074 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCD1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.900e-9 Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G AT +GL + G G+ FV S +G+ ++S PFD+ +G PY +++ T +G GG+ F PV+SI D+GGN+V
Sbjct: 124 GVATCTGLSVNLVGSGYTLVFV---SIALGLQ-SESSPFDILLGPPYKLSMYTYIGMAQGGTPFLPQPVVSIVDRGGNIV 199
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A418B4B3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4B3_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.000e-8 Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G AT +GL I G G+ +F + T+S PFD+ +G P+ +++ T +G GG+ F PV+SI D+GGN+V
Sbjct: 93 GVATCTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGTAQGGTPFLPQPVVSIVDRGGNIV 168
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A024UT59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT59_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.020e-8 Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G AT +GL I G G+ +F + T+S PFD+ +G P+ +++ T +G GG+ F PV+SI D+GGN+V
Sbjct: 93 GVATCTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGTAQGGTPFLPQPVVSIVDRGGNIV 168
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A067CLT5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CLT5_SAPPC) HSP 1 Score: 58.5 bits (140), Expect = 3.770e-8 Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G T +GL I G+ FV+ S GV T S PF++ +G P+ IAL+T++G GGS F P +SI DKGGNVV
Sbjct: 94 GVITCTGLSIDLVATGYTLTFVSL-SFGV---QTTSNPFNILLGLPHTIALTTALGATTGGSPFAPQPSVSIVDKGGNVV 169
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A7S1DYM4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DYM4_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 7.520e-8 Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G ++G+ + + G ++ RF A G DS PF+V IG P ++++ST G G TF + PV+SI D+GGNVV
Sbjct: 10 GVVNYAGMSVDKYGYCYMMRFSA-----PGFDPVDSSPFEVSIGPPTSLSVSTQPGSFRPGYTFGVLPVVSIVDRGGNVV 84
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A397EHQ9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EHQ9_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 9.580e-8 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G A +GL I G G+ +F + T+S PFD+ +G P+ +++ T +G GG+ F PV+SI DKGGN+V
Sbjct: 18 GVAICTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGVAQGGTPFLPQPVVSIVDKGGNIV 93
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A397F4U1_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F4U1_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7 Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
G A +GL I G G+ +F + T+S PFD+ +G P+ +++ T +G GG+ F P++SI DKGGN+V
Sbjct: 78 GVAICTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGVAQGGTPFLPQPIVSIVDKGGNIV 153 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig60711.16722.1 >prot_Ecto-sp13_S_contig60711.16722.1 ID=prot_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIAback to top mRNA from alignment at Ecto-sp13_S_contig60711:2..690+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig60711.16722.1 ID=mRNA_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60711:2..690+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60711:2..690+ >mRNA_Ecto-sp13_S_contig60711.16722.1 ID=mRNA_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60711:2..690+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |