mRNA_Ecto-sp13_S_contig60711.16722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60711.16722.1
Unique NamemRNA_Ecto-sp13_S_contig60711.16722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 5.000e-43
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            GRATFSGLFIKE GEGFICRFVAFNSAGVGVAWTDSEPFDVG+GEPYAIALSTSVGRM+GGSTFDI PVISIQDKGGNVV
Sbjct:  115 GRATFSGLFIKEAGEGFICRFVAFNSAGVGVAWTDSEPFDVGVGEPYAIALSTSVGRMNGGSTFDIPPVISIQDKGGNVV 194          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 3.620e-38
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQ 219
            GRATFSGLFIKE GEGFICRFVAFNSAGVGVAWTDSEPFDVG+GEPYAIALSTSVGRMDGGSTFD  PVISIQ
Sbjct:  115 GRATFSGLFIKEAGEGFICRFVAFNSAGVGVAWTDSEPFDVGVGEPYAIALSTSVGRMDGGSTFDTPPVISIQ 187          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A067BMX7_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BMX7_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 1.750e-9
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G  T +GL I     G+   FV+  S GV    T S PFD+ +G P+ IAL+T++G   GGS F   P +SI DKGGNVV
Sbjct:   93 GVITCTGLSIDLVAAGYTLTFVSL-SFGV---QTTSHPFDILLGLPHTIALTTALGATTGGSPFAPQPSVSIVDKGGNVV 168          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A485KCD1_9STRA (Aste57867_5074 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCD1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.900e-9
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G AT +GL +   G G+   FV   S  +G+  ++S PFD+ +G PY +++ T +G   GG+ F   PV+SI D+GGN+V
Sbjct:  124 GVATCTGLSVNLVGSGYTLVFV---SIALGLQ-SESSPFDILLGPPYKLSMYTYIGMAQGGTPFLPQPVVSIVDRGGNIV 199          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A418B4B3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4B3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.000e-8
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G AT +GL I   G G+  +F +          T+S PFD+ +G P+ +++ T +G   GG+ F   PV+SI D+GGN+V
Sbjct:   93 GVATCTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGTAQGGTPFLPQPVVSIVDRGGNIV 168          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A024UT59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT59_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.020e-8
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G AT +GL I   G G+  +F +          T+S PFD+ +G P+ +++ T +G   GG+ F   PV+SI D+GGN+V
Sbjct:   93 GVATCTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGTAQGGTPFLPQPVVSIVDRGGNIV 168          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A067CLT5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CLT5_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 3.770e-8
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G  T +GL I     G+   FV+  S GV    T S PF++ +G P+ IAL+T++G   GGS F   P +SI DKGGNVV
Sbjct:   94 GVITCTGLSIDLVATGYTLTFVSL-SFGV---QTTSNPFNILLGLPHTIALTTALGATTGGSPFAPQPSVSIVDKGGNVV 169          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A7S1DYM4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DYM4_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 7.520e-8
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G   ++G+ + + G  ++ RF A      G    DS PF+V IG P ++++ST  G    G TF + PV+SI D+GGNVV
Sbjct:   10 GVVNYAGMSVDKYGYCYMMRFSA-----PGFDPVDSSPFEVSIGPPTSLSVSTQPGSFRPGYTFGVLPVVSIVDRGGNVV 84          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A397EHQ9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EHQ9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.580e-8
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G A  +GL I   G G+  +F +          T+S PFD+ +G P+ +++ T +G   GG+ F   PV+SI DKGGN+V
Sbjct:   18 GVAICTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGVAQGGTPFLPQPVVSIVDKGGNIV 93          
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Match: A0A397F4U1_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F4U1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIALSTSVGRMDGGSTFDISPVISIQDKGGNVV 240
            G A  +GL I   G G+  +F +          T+S PFD+ +G P+ +++ T +G   GG+ F   P++SI DKGGN+V
Sbjct:   78 GVAICTGLSINLVGSGYTLQFASLFHG----LQTESSPFDILLGPPFKLSMYTYIGVAQGGTPFLPQPIVSIVDKGGNIV 153          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60711.16722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L133_9PHAE5.000e-4395.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ0_ECTSI3.620e-3894.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067BMX7_SAPPC1.750e-946.25Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A485KCD1_9STRA7.900e-940.00Aste57867_5074 protein n=1 Tax=Aphanomyces stellat... [more]
A0A418B4B3_9STRA2.000e-837.50Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UT59_9STRA2.020e-837.50Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067CLT5_SAPPC3.770e-845.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S1DYM4_HEMAN7.520e-838.75Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A397EHQ9_9STRA9.580e-837.50Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A397F4U1_9STRA1.300e-736.25Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60711contigEcto-sp13_S_contig60711:2..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.7
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog2880.D7FJQ0
Model size240
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.FG-GAP repeat
EggNOG OGs28JEB@1,2QRTB@2759
Cds size240
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.947217-CDS-Ecto-sp13_S_contig60711:1..2201681463845.947217-CDS-Ecto-sp13_S_contig60711:1..220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60711 2..220 +
1681463845.9637384-CDS-Ecto-sp13_S_contig60711:669..6901681463845.9637384-CDS-Ecto-sp13_S_contig60711:669..690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60711 670..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60711.16722.1prot_Ecto-sp13_S_contig60711.16722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60711 2..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60711.16722.1

>prot_Ecto-sp13_S_contig60711.16722.1 ID=prot_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
GRATFSGLFIKETGEGFICRFVAFNSAGVGVAWTDSEPFDVGIGEPYAIA
LSTSVGRMDGGSTFDISPVISIQDKGGNVV
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mRNA from alignment at Ecto-sp13_S_contig60711:2..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60711.16722.1 ID=mRNA_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60711:2..690+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGGGCGACCTTCTCAGGATTGTTCATCAAAGAGACTGGCGAGGGTTT TATCTGTCGTTTTGTGGCGTTCAACAGTGCGGGTGTTGGAGTAGCCTGGA CCGATTCTGAACCCTTTGACGTTGGAATCGGCGAACCCTACGCCATTGCC TTGAGTACTTCTGTGGGGCGAATGGACGGAGGCTCTACCTTCGACATCTC CCCCGTCATATCCATTCAGGTGGGTTTCTGGGTCTGATGTCATCTACTGA AGTCGAACATCTTTACAGACTATAATAATCGCAGATTTCTCGTCGAATAT GGGCAACGCCTTTAAATCTCGAAAGGGAAAGCACAGTTTCGTGCTCAAGG ACAGATGAGAGACGCCTGTGTGGGACCTGAAGGTATCTTCCTTTGAGGAT CCTGTAAGGCGAGTTCGCTTCAATTTAAAGAAAGAATGTCCTACCATGGC CTGCTAGCAAGAAGTGTTTGGTGCACTGATTTTCGAATAAACTTTTCTTG ATTTCGGGCGATATGATGTTGATATTACGCAATTGACGTCACGCGAGTGT TATTCCGGTAGACGATAGACGTGTTCCTATATTGTACGCAATCGCACGTG ATTCCACGCCCGCTTTGCCTGCAGTATTCTCACTTTTTAATTCACACGAC AAATCACTTTCATCACAGGACAAGGGTGGAAACGTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60711:2..690+

>mRNA_Ecto-sp13_S_contig60711.16722.1 ID=mRNA_Ecto-sp13_S_contig60711.16722.1|Name=mRNA_Ecto-sp13_S_contig60711.16722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60711:2..690+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGGGCGACCTTCTCAGGATTGTTCATCAAAGAGACTGGCGAGGGTTT
TATCTGTCGTTTTGTGGCGTTCAACAGTGCGGGTGTTGGAGTAGCCTGGA
CCGATTCTGAACCCTTTGACGTTGGAATCGGCGAACCCTACGCCATTGCC
TTGAGTACTTCTGTGGGGCGAATGGACGGAGGCTCTACCTTCGACATCTC
CCCCGTCATATCCATTCAGGACAAGGGTGGAAACGTGGTC
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