mRNA_Ecto-sp13_S_contig606.16707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig606.16707.1
Unique NamemRNA_Ecto-sp13_S_contig606.16707.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 1.240e-128
Identity = 196/247 (79.35%), Postives = 214/247 (86.64%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFVQGAHTS 990
            TGLSVLTTD DG +HSIVIEV D H+LDSSCPAGVSPCL DGAL V+LDG E++FAP TV+LG +V +SAANLPGACRSFGFEKYWERKKLE+A  G  L +  SM EWILGDPTATNM ECVEYVARAE EEGGVFAHQSEH SFQIVTP+AT+RLSHGRLHQ+AMRDPTDRFDLPDHLTWQMNMA+ H  +S AAKG+LG+TFVPTRD  GKPIMTG+EAIRG EEDYRV G LG  FVQ AHTS
Sbjct:  368 TGLSVLTTDTDGLEHSIVIEVIDPHNLDSSCPAGVSPCLGDGALVVLLDGVESLFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQDAHTS 614          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 392 bits (1007), Expect = 1.270e-126
Identity = 191/237 (80.59%), Postives = 209/237 (88.19%), Query Frame = 1
Query:  241 LVRTGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKG 951
            ++   LSVLTTDADG DHSIVIEVA+ HSLDSSCPAGVSPCLADGALRV+LDGDEA+FA  TVSLG  V ISA NLPGACRSFGFEKYWE KKLE+A  G +L ++ SM EWILGDPTATNM ECVEYVARAE EEGG+FAHQSEHASFQIVTP AT+RLSHGRLHQ+AMRDPTD++DLPDHLTWQMN+AVDHN +S AAKG+LGETFVPTRD SGKPIMTGMEAIRG EED +  G
Sbjct:   68 VLERRLSVLTTDADGSDHSIVIEVAEPHSLDSSCPAGVSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSFGFEKYWEHKKLEYATGGRQLRTQPSMGEWILGDPTATNMDECVEYVARAEAEEGGMFAHQSEHASFQIVTPAATVRLSHGRLHQIAMRDPTDQYDLPDHLTWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDCKCGG 304          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 5.550e-110
Identity = 167/240 (69.58%), Postives = 198/240 (82.50%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
            TGLS+LTTDA+G  HSIVIEV + H ++S+CPAGVSPCLADG+LRV+L+G E + AP +V+L   V ++A NLPG CRSFGFE YWERKKLE+A HG  LG + SM +W+LGDPTATNM EC+EYVA+AEG+ GG+FA QSEHASFQIVTP AT+RLSHGRLHQ+A RDPT+RFDLPDH TWQMNM +DHN +S +A G+LGET  PT+D  G+ IMTGMEAIRG EEDYRV GPL   F
Sbjct:  140 TGLSLLTTDANGEVHSIVIEVKNPHDIESACPAGVSPCLADGSLRVMLNGKEELSAPGSVALADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHLGEQ-SMGDWLLGDPTATNMDECMEYVAQAEGQAGGLFALQSEHASFQIVTPTATVRLSHGRLHQIATRDPTNRFDLPDHTTWQMNMGIDHNEVSYSATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVAGPLDVTF 378          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 4.330e-95
Identity = 158/246 (64.23%), Postives = 179/246 (72.76%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAE---WILGDPTATNMGECVEYV--ARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
            TGL + T D +G DHS+VI V D HSLDS+CP   S CLADGAL V LDGD A+ +P    LGP V ISA NLPGACRSFGFEKYWERKK E+   G RL + L M E   WILGDPTATNM EC EYV  A  +G+  G+F + SEH SFQIVTP+ TIRLSHGRLHQ+AMRDPTDRFD+PDHLTWQMN+A D+  L+  A G+LGET   T D +G PIM GM AIRG +EDY V GPL   FV
Sbjct:  190 TGLGIKTRDIEGLDHSLVITVTDPHSLDSACPVQGSTCLADGALTVELDGDVALLSPGEAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQ-AGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFV 434          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.560e-94
Identity = 166/244 (68.03%), Postives = 189/244 (77.46%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHG-HRLGSKLSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
            TGLS++TTD DG +HSI+I V D +SLDS C  GVSPCLADG+L VVLDG+E + AP  V L  +V +SA N+PGACRSFGFEKYWERKKLE+A  G  RL  + SM EWILGDPTATNM EC EYVAR  A GE+G +F HQSEHASFQIVTP A IRLSHGRLHQ+A      +F LPDH+TWQMN+AVDHN +S  AKGVLGET VPTR  SG+ IM GMEAIRG +EDY V+GPLG  F 
Sbjct:  831 TGLSLITTDGDGQEHSIIISVKDPYSLDSDCSPGVSPCLADGSLIVVLDGNETLLAPGAVELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRRLSVQQSMGEWILGDPTATNMAECTEYVARHIAGGEDGDLFTHQSEHASFQIVTPAAIIRLSHGRLHQIA------QFGLPDHMTWQMNLAVDHNDVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDFT 1068          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 2.840e-93
Identity = 161/243 (66.26%), Postives = 187/243 (76.95%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHR-LGSKLSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
            TGLS++TTD  G +HSI+I V D H+LDS CP GVSPCLADG+L VVLDG+E +FAP  V L P+V +SA N+PGACRSFGFEKYWERKKLE+A  G R L ++ SM EWILGDPTATN+ EC EYVAR  A   +G +FAHQSEH SFQIVTP A +RLSHGR HQ+A         LPDH+TWQMN+AVDHN +S +AKGVLGET +PTR  SG+ +M GMEAIRG EEDY V GPLG  F
Sbjct:  649 TGLSLITTDGGGQEHSIIISVKDPHNLDSDCPPGVSPCLADGSLIVVLDGNETLFAPGAVELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRGLLTEQSMGEWILGDPTATNVEECTEYVARHVAGSVDGDLFAHQSEHTSFQIVTPTAVVRLSHGRRHQIA------ELGLPDHVTWQMNLAVDHNDVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGF 885          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.830e-90
Identity = 149/233 (63.95%), Postives = 180/233 (77.25%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHG-HRLGSK-LSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEED 936
            TG+S++T D +G DHS+VI V D HSL+SSCPAGV+PCLA+GAL V LDG EA+ AP  V + PN+ +S  NLPGACRSFGFEKYWERKKLE+A  G  RL SK   M +WILGDPTATNM EC EYVAR   EG +GG+FAH+SEHASFQIV P AT+RLSHGRLHQ+A      ++ LPDH TWQMN+A+D + +   A+GVLGET VPTRD  G+ +M GME+IRG +E+
Sbjct:  107 TGISLITQDGNGLDHSVVITVKDPHSLESSCPAGVTPCLANGALSVSLDGKEALSAPGVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA------QYGLPDHSTWQMNLAIDSDSVGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEE 333          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 7.440e-70
Identity = 128/233 (54.94%), Postives = 149/233 (63.95%), Query Frame = 1
Query:  250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKL---SMAEWILGDPTATNMGECVEYVARAEGEE-GGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEED 936
            TGL + TTDA+G DH+IVI V D HSLDS+CP GVSPCLADGAL V LDG  A+ AP  V  GP V ISA NLPGACRSFGFE+YWERKK E+A  G RL S     +M++WILGDPTATNM EC EYV  A     GG+F H  EH SFQI+TP  TIR +                         MN+A+D   +S  A G+LGET  PT D +G PIM GM +IRG ++D
Sbjct:   48 TGLGITTTDANGLDHTIVITVTDPHSLDSACPVGVSPCLADGALTVQLDGKHALLAPGEVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSDWILGDPTATNMAECTEYVVEATRNGLGGLFEHDLEHTSFQILTPMGTIRRAMAAFTSFPC----------------MNLAIDRIDVSPNATGILGETQKPTLDANGSPIMQGMASIRGAQDD 264          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.690e-29
Identity = 87/250 (34.80%), Postives = 129/250 (51.60%), Query Frame = 1
Query:  244 VRTGLSVLTTDADGFDHSIVIEVADAHSL-DSSCPAGVSPCLADGALRVVLDGDEA----MFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILG-DPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAA-KGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
            + T L++++   +G+  S+VIEV + +++    CP GVSPCLA+G LR+++DG E      F+         + +SA+NLP  CR FG  + W R   +      +L    S+ EWIL  D        C +Y+A     E  +   Q+ HA F+I TP  T+RL+ G  +Q       D   LPD   WQM++ +D   +   A  G+LGET  P    +G+ +M G +A RG  EDYRV   LG +F 
Sbjct:   65 LMTSLAIMS---EGY--SVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIA-----ENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFA 304          
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.550e-28
Identity = 89/249 (35.74%), Postives = 130/249 (52.21%), Query Frame = 1
Query:  244 VRTGLSVLTTDADGFDHSIVIEVADAHSL-DSSCPAGVSPCLADGALRVVLDG---DEAMFAPSTVSLGPN-VGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILG-DPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAA-KGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
            + T L+VL+       HS+VIEV + +++  + CP GVSPCLA+G LR+++D    DE +     V +    + +S++NLP  C+ FG ++ W R   +       L    S+ EWIL  D      G C +Y+A     E  +   QS+HA F+I TP  T+RL+ G  +Q       D   LPD   WQM + +D   +   A  G+LGET  P  D +G+ +M G +A RG  EDYRV   L  +F
Sbjct:  164 LMTSLAVLSKG-----HSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIA-----ENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHF 402          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KVF3_9PHAE1.240e-12879.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE1.270e-12680.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE5.550e-11069.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE4.330e-9564.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE2.560e-9468.03LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE2.840e-9366.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE1.830e-9063.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE7.440e-7054.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI1.690e-2934.80Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JS96_9PHAE1.550e-2835.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig606contigEcto-sp13_S_contig606:7796..12171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score101.3
Seed ortholog evalue5.3e-19
Seed eggNOG ortholog2880.D8LCQ0
Model size2511
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs28MX6@1,2QUFK@2759
Cds size585
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig606.16707.1prot_Ecto-sp13_S_contig606.16707.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig606 8204..10653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463844.442677-UTR-Ecto-sp13_S_contig606:7795..82031681463844.442677-UTR-Ecto-sp13_S_contig606:7795..8203Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig606 7796..8203 +
1681463844.5129762-UTR-Ecto-sp13_S_contig606:10653..121711681463844.5129762-UTR-Ecto-sp13_S_contig606:10653..12171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig606 10654..12171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463844.4549007-CDS-Ecto-sp13_S_contig606:8203..82961681463844.4549007-CDS-Ecto-sp13_S_contig606:8203..8296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig606 8204..8296 +
1681463844.4661882-CDS-Ecto-sp13_S_contig606:8590..86741681463844.4661882-CDS-Ecto-sp13_S_contig606:8590..8674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig606 8591..8674 +
1681463844.4770327-CDS-Ecto-sp13_S_contig606:9236..94761681463844.4770327-CDS-Ecto-sp13_S_contig606:9236..9476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig606 9237..9476 +
1681463844.4875767-CDS-Ecto-sp13_S_contig606:10068..101801681463844.4875767-CDS-Ecto-sp13_S_contig606:10068..10180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig606 10069..10180 +
1681463844.4992352-CDS-Ecto-sp13_S_contig606:10597..106531681463844.4992352-CDS-Ecto-sp13_S_contig606:10597..10653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig606 10598..10653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig606.16707.1

>prot_Ecto-sp13_S_contig606.16707.1 ID=prot_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSK
LSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEA
TIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGE
TFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFVQGAHTS*
back to top

mRNA from alignment at Ecto-sp13_S_contig606:7796..12171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig606.16707.1 ID=mRNA_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig606:7796..12171+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATACAGTAGGCTTTTGCCAGCGGGGTGCCGGAGCCCGCCTATCTCAGTT CGGTTTGAAGCGGTACCTCCTTGAGCGAGTAGGGCCCAAAACTCAGCGTG TCAATGGATGACAGAGCTGTTGTACGATCACAGGATCATCTGTGACTGCC TCGGCCGCAAACACGCCACGCCATGCCATGCCATGCCATGCCATGTGACA AACCTTTCCCGTTGTTGTTTGCACTCTGTAATGGCGATTGCTTGTCCGAA CAGGCCTGTCCGTCCTCACCACCGACGCAGACGGGTTCGATCACAGCATC GTCATCGAAGTCGCTGACGCCCACAGCTTGGACAGCTCTTGCCCGGCCGG AGTTTCGCCTTGCCTCGCGGACGGCGCGTTGAGGGTGGTTCTCGATGGGG ACGAGGCGATGTTCGCCCCCTCCACGGTTTCCCTTGGCCCAAACGTGGGA ATCTCGGCGGCAAACCTTCCTGGCGCCTGCCGCTCGTTCGGCTTCGAGAA GGTTCGGCGAACAAGGTTCTTTTCTATTTTTTTCAGTGCAGCTTCTTCTC GCGTGCACTTGCCGACCTCTACGTAGTCTATACATTGTTCTTTATGTCAA TCTCGCCTGCCTTTTCCAACTGGCCTCCCAACTGGCGGCGATTGTATTCT AGATCCTGGACCCTTCTCGTTGCAGGGAATGTAGTCGATTGCCAGGGGCT ACAGCACTACGGCATCTGCTAGAAACTCCGTCCAATTAGTTCTCACCACC AACCGGTGACTGCACTGTCCCGTTGACTTCTCATTTTGTCTGCAGTACTG GGAACGCAAGAAGCTCGAGCACGCCAACCACGGTCATCGCCTGGGGTCCA AACTGAGCATGGCCGAGTGGATACTTGGGGTACGAAGAAGATGTCGACCG ACCTCTGAGTTCATGCAGGCATATACTAACGTTGTAGCGGTTGGTAGGAG CTTTTGAGCGACGTTGCGCAATGTTGGTTCCTTGCTTTCGGAGGAAGAAA GCACGAGAGGCTAGAAGGGGTAATACCCCGAGGTCAAAATGTGGTTGGTG GCCCGGCGGGAACGGAATAGGCACTTTTCGCCACTTATTTTTTTCTGAAC GCAAGCTATGCCCGGTTAAAGATCACCATATCATAACCTTTTCCGTGTGC ACCGTCGAGTTACTTTTTCGGTGTGCATTGGTCTAAAGTTCCCGCTGTCG AGTTTATCCTCGAGTTCTGGAGGAAACAGTTTTATCGCATTCAACCAATC AGTACTGAGGGCATCCTCTTTCTTGTCACTGCTGGGCACCATGCTGGGGA ACTGGTGCTCGCGATACCTCAGGCGACCTGTAGAAAACCTTCAACTCGCG CGTACGTGGTTACCATTGGTACATATGGTCGTCCGGCAACGTCATGCAAA ACCCGTCCCGTTTGTCGTTGGCCTGCCGTCTTGTCTTCCAGGATCCTACC GCTACCAACATGGGTGAGTGTGTGGAATACGTGGCGCGCGCCGAGGGCGA AGAGGGCGGGGTGTTCGCCCACCAGTCCGAACACGCCTCCTTCCAGATCG TGACTCCCGAGGCTACCATCCGCCTGAGCCACGGCAGGCTTCACCAGGTC GCCATGCGTGACCCGACCGACCGGTTCGACCTTCCCGACCATTTGACCTG GCAGATGAACATGGCCGTTGATCACAACCACGTGAGAGACGTGTGCACAA TCGCGTACCATGTGTTGGCCTACTTTGCCTCCGCCTTCATGGCGTACCGG AATGACTGACAGCTAGTATTTGGCCCAGCCGCTGTTACATTATTCTCTTT CTTCTTCACACTGCTCCCCAACTTCTCTTGATTCACGACACGAAACATTT CAGTAGATGGTTGTCACAAAGAAGGGTGACAAACGAGAGATGTATCCGTA GCTGGGGCTTGAAAGGGTCATCTCTTCGGATATCCGAAACACTGGGGAAA TCTACTAAAGAAATACACCACCTGCTTGCGAGCACAGTGTGGGGGAGGTT TTTTGCTTTTGCAAGGCGATTCCTCCAGGTGGGGGAGCCGTCGGCAAACT GATTTGCGTGGGCAGGAGCTCAATGGTACCTCAAGACATGGCATATCGTC GCGTACGGCGAGGTTAACAATTTTCTCGTAACTTGGGAGTTACCTAGTTT CGGGCAGGGTTAAGACCAACGATGTTTACCCTAGGGCACAGCATCAGACA GACATGAGGATACAGATCGATAACAGCCGCCCCAAAGCAAAGCGTTCCTT GTTCCTGATGCGGCTGTATACAGCTAAGCCGCGCTGCGAAGGGCGTCCTC GGAGAAACGTTCGTGCCGACGCGTGACACCAGCGGCAAGCCCATCATGAC CGGCATGGAGGCCATACGTGGAAAGGAGGAAGACTGTAAGTGTAGCGAGA ATCGATATCCTTGAAAATGGCATCATCTGGCGTCTACTTTGGACGGTTTT CGGCCCGCTCCTCCCTCCATCTGGTACCATTGTAGGGGTGCGGGCAACAA GTACAACGGAATTCGGGGCAACCTAGCCAACACTTTCAAAACAATTATCG AGTCTTTTTCTTTCCTTGCCAAGTCTGTGTAGGTTTTCGGTGGTTGTTCT TGTGTTCGTGGCTTCGTTTTCTCGTCACTCGACTTCACAGCGTTCCAACA CGAGGATTGGTGTAGATCAGTACCTTGTCAACGCTGTCTCGGTGGACCAA CAAGAGGAATCGTGAGGCAATCGATTGTGAATTCGGAAGTCATTTAATAC ACTGCCCCCCCCCCCCGGCCATCGCTCGTTTTTGCCCCTCGTCGGTTGGC AGACCGTGTGAAGGGACCTCTTGGGACATACTTCGTCCAAGGCGCCCACA CGTCTTAGAGGCCTCGACCTCGCACTAAATATGCGAAGCGAAATGTGCAA CGATTCCGAAGCACGTGAATGCAGCCAATGGTTCCCGTCGTTGCAGTACA GATTTCGCGCCCACGAATCGGGTCGTACAACGCAAGTGGGTAGGGGAAGC GGCGTGAAATTCTATCGATGGCGTGCCTCGTCGCATATCAACGAGGGGAT CGCCATATTCGCACACGCGGTAAGATATGGGCAGACGGCCGGTATTGAAG GCTTGGTTGCTCGGGCGGAGTAGATAGCATGCGTCGGGTTTCGTGCGACG GAGTGTAGGGTATTTCGTACGTTTTGGCAGAGCACGTGGATACCCGGTTT TGCGTTTCACGAAGATTTGTGATGGAAGATACGGAGCGTTCCTGGCGAAT GAAGCAACACAGGGTCGGTGATGCGTGTACGGAGGCAAGAAATGACGGTG GTAAGAGGGAAGTTGGGTTGTGATACGAGGGTGTTCCTGTTGTGTTTGTT GGGCGGGGTGGTTGCGGAGACACAGACTTGCTGTTGCCTAACTCTTTTGG GGGCGGGTAACCCAACACCCCTTCGTGTTTGCACTTGCGCGAAGCAGCTG CAGTGCCAGTAATCCCCTCACAGGTTCTAGCTTGTACCGGTCTTCAGATG TTCTCAGTGGCACTTTACGTAAAACCCTTGCGGCGACCGTCACCCTGGTG AGCCGTGTTCTCTTCTTATGGGATACTCTTGGTAGTCGGGGTTGAGTTGG AAACTCGTTGCTCGGGGTTCACCACGTCACGTCGTTTGACTGCAGCACCA CGTTTTCCTCCCGCCCTCCAAAACAGAGGGGTCAGAAGAACCTCTGCGAG ACATCAGGGTGGGAAACGTTGAGTCACACGAAGGACCTTGGCGGAGGTCG ATTGCGTTGTCGGTCGGTCGGTCGGGTGGAGGGAGCCGACTATGAGAACG GATGGAGCATGGCCGTGCCAAACGCTCCACGCCCTTTGCATGGAAGTCGC AACGCAGGGAGCTCGATACCTTTTCGGATATTCTACACTGCTGCAGTAGT AATGACTAGTCGCTGTTGGGGTAAAGTGCGGAGAAGAAGTAAAAGACAAA TTGCTGCAGGGCGATTGCACACCGTCAACTGGGTATCTTGTCCTGTCGTT GTTGGTTTTTGTACTGTTGTTGTTGTCATCGTTTTGTTGTTGTCTTCCCT CCAAAAGAACATGTGTACTACCTCGGCGGCTTTCTTCATTACCACATGAC AATTGTACGGTTAGTTGTTCGGAGCAGATGTTGGCAAGTCAGATGTTGGT AGGGACTGAAGACTAGACTATTAGTCCACCGTACTTCCTTCTTTGAGTTT CAATTTTGAGTTGATGTAACGCATGCCCGAACGTAATGAGCAGGACTAAC TGATCGTGTTGGACACACGTTTCGGGAGAGCAACGGAGGTGGTTGACGCT CTTACAAAGGTATTATTGCCGCAGGCGACCCCGTAGTAGTCATCTACAGG GAAGCCCATGGAAAAATTGCGTGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig606:7796..12171+

>mRNA_Ecto-sp13_S_contig606.16707.1 ID=mRNA_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig606:7796..12171+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCCCCCTCCACGGTTTCCCTTGGCCCAAACGTGGGAATCTCGGC
GGCAAACCTTCCTGGCGCCTGCCGCTCGTTCGGCTTCGAGAAGTACTGGG
AACGCAAGAAGCTCGAGCACGCCAACCACGGTCATCGCCTGGGGTCCAAA
CTGAGCATGGCCGAGTGGATACTTGGGGATCCTACCGCTACCAACATGGG
TGAGTGTGTGGAATACGTGGCGCGCGCCGAGGGCGAAGAGGGCGGGGTGT
TCGCCCACCAGTCCGAACACGCCTCCTTCCAGATCGTGACTCCCGAGGCT
ACCATCCGCCTGAGCCACGGCAGGCTTCACCAGGTCGCCATGCGTGACCC
GACCGACCGGTTCGACCTTCCCGACCATTTGACCTGGCAGATGAACATGG
CCGTTGATCACAACCACCTAAGCCGCGCTGCGAAGGGCGTCCTCGGAGAA
ACGTTCGTGCCGACGCGTGACACCAGCGGCAAGCCCATCATGACCGGCAT
GGAGGCCATACGTGGAAAGGAGGAAGACTACCGTGTGAAGGGACCTCTTG
GGACATACTTCGTCCAAGGCGCCCACACGTCTTAG
back to top