mRNA_Ecto-sp13_S_contig606.16707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 1.240e-128 Identity = 196/247 (79.35%), Postives = 214/247 (86.64%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFVQGAHTS 990
TGLSVLTTD DG +HSIVIEV D H+LDSSCPAGVSPCL DGAL V+LDG E++FAP TV+LG +V +SAANLPGACRSFGFEKYWERKKLE+A G L + SM EWILGDPTATNM ECVEYVARAE EEGGVFAHQSEH SFQIVTP+AT+RLSHGRLHQ+AMRDPTDRFDLPDHLTWQMNMA+ H +S AAKG+LG+TFVPTRD GKPIMTG+EAIRG EEDYRV G LG FVQ AHTS
Sbjct: 368 TGLSVLTTDTDGLEHSIVIEVIDPHNLDSSCPAGVSPCLGDGALVVLLDGVESLFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQDAHTS 614
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE) HSP 1 Score: 392 bits (1007), Expect = 1.270e-126 Identity = 191/237 (80.59%), Postives = 209/237 (88.19%), Query Frame = 1
Query: 241 LVRTGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKG 951
++ LSVLTTDADG DHSIVIEVA+ HSLDSSCPAGVSPCLADGALRV+LDGDEA+FA TVSLG V ISA NLPGACRSFGFEKYWE KKLE+A G +L ++ SM EWILGDPTATNM ECVEYVARAE EEGG+FAHQSEHASFQIVTP AT+RLSHGRLHQ+AMRDPTD++DLPDHLTWQMN+AVDHN +S AAKG+LGETFVPTRD SGKPIMTGMEAIRG EED + G
Sbjct: 68 VLERRLSVLTTDADGSDHSIVIEVAEPHSLDSSCPAGVSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSFGFEKYWEHKKLEYATGGRQLRTQPSMGEWILGDPTATNMDECVEYVARAEAEEGGMFAHQSEHASFQIVTPAATVRLSHGRLHQIAMRDPTDQYDLPDHLTWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDCKCGG 304
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE) HSP 1 Score: 351 bits (900), Expect = 5.550e-110 Identity = 167/240 (69.58%), Postives = 198/240 (82.50%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILGDPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
TGLS+LTTDA+G HSIVIEV + H ++S+CPAGVSPCLADG+LRV+L+G E + AP +V+L V ++A NLPG CRSFGFE YWERKKLE+A HG LG + SM +W+LGDPTATNM EC+EYVA+AEG+ GG+FA QSEHASFQIVTP AT+RLSHGRLHQ+A RDPT+RFDLPDH TWQMNM +DHN +S +A G+LGET PT+D G+ IMTGMEAIRG EEDYRV GPL F
Sbjct: 140 TGLSLLTTDANGEVHSIVIEVKNPHDIESACPAGVSPCLADGSLRVMLNGKEELSAPGSVALADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHLGEQ-SMGDWLLGDPTATNMDECMEYVAQAEGQAGGLFALQSEHASFQIVTPTATVRLSHGRLHQIATRDPTNRFDLPDHTTWQMNMGIDHNEVSYSATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVAGPLDVTF 378
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 314 bits (804), Expect = 4.330e-95 Identity = 158/246 (64.23%), Postives = 179/246 (72.76%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAE---WILGDPTATNMGECVEYV--ARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
TGL + T D +G DHS+VI V D HSLDS+CP S CLADGAL V LDGD A+ +P LGP V ISA NLPGACRSFGFEKYWERKK E+ G RL + L M E WILGDPTATNM EC EYV A +G+ G+F + SEH SFQIVTP+ TIRLSHGRLHQ+AMRDPTDRFD+PDHLTWQMN+A D+ L+ A G+LGET T D +G PIM GM AIRG +EDY V GPL FV
Sbjct: 190 TGLGIKTRDIEGLDHSLVITVTDPHSLDSACPVQGSTCLADGALTVELDGDVALLSPGEAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQ-AGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFV 434
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 328 bits (842), Expect = 2.560e-94 Identity = 166/244 (68.03%), Postives = 189/244 (77.46%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHG-HRLGSKLSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
TGLS++TTD DG +HSI+I V D +SLDS C GVSPCLADG+L VVLDG+E + AP V L +V +SA N+PGACRSFGFEKYWERKKLE+A G RL + SM EWILGDPTATNM EC EYVAR A GE+G +F HQSEHASFQIVTP A IRLSHGRLHQ+A +F LPDH+TWQMN+AVDHN +S AKGVLGET VPTR SG+ IM GMEAIRG +EDY V+GPLG F
Sbjct: 831 TGLSLITTDGDGQEHSIIISVKDPYSLDSDCSPGVSPCLADGSLIVVLDGNETLLAPGAVELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRRLSVQQSMGEWILGDPTATNMAECTEYVARHIAGGEDGDLFTHQSEHASFQIVTPAAIIRLSHGRLHQIA------QFGLPDHMTWQMNLAVDHNDVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDFT 1068
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 322 bits (825), Expect = 2.840e-93 Identity = 161/243 (66.26%), Postives = 187/243 (76.95%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHR-LGSKLSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
TGLS++TTD G +HSI+I V D H+LDS CP GVSPCLADG+L VVLDG+E +FAP V L P+V +SA N+PGACRSFGFEKYWERKKLE+A G R L ++ SM EWILGDPTATN+ EC EYVAR A +G +FAHQSEH SFQIVTP A +RLSHGR HQ+A LPDH+TWQMN+AVDHN +S +AKGVLGET +PTR SG+ +M GMEAIRG EEDY V GPLG F
Sbjct: 649 TGLSLITTDGGGQEHSIIISVKDPHNLDSDCPPGVSPCLADGSLIVVLDGNETLFAPGAVELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRGLLTEQSMGEWILGDPTATNVEECTEYVARHVAGSVDGDLFAHQSEHTSFQIVTPTAVVRLSHGRRHQIA------ELGLPDHVTWQMNLAVDHNDVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGF 885
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.830e-90 Identity = 149/233 (63.95%), Postives = 180/233 (77.25%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHG-HRLGSK-LSMAEWILGDPTATNMGECVEYVAR--AEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEED 936
TG+S++T D +G DHS+VI V D HSL+SSCPAGV+PCLA+GAL V LDG EA+ AP V + PN+ +S NLPGACRSFGFEKYWERKKLE+A G RL SK M +WILGDPTATNM EC EYVAR EG +GG+FAH+SEHASFQIV P AT+RLSHGRLHQ+A ++ LPDH TWQMN+A+D + + A+GVLGET VPTRD G+ +M GME+IRG +E+
Sbjct: 107 TGISLITQDGNGLDHSVVITVKDPHSLESSCPAGVTPCLANGALSVSLDGKEALSAPGVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA------QYGLPDHSTWQMNLAIDSDSVGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEE 333
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE) HSP 1 Score: 241 bits (614), Expect = 7.440e-70 Identity = 128/233 (54.94%), Postives = 149/233 (63.95%), Query Frame = 1
Query: 250 TGLSVLTTDADGFDHSIVIEVADAHSLDSSCPAGVSPCLADGALRVVLDGDEAMFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKL---SMAEWILGDPTATNMGECVEYVARAEGEE-GGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAAKGVLGETFVPTRDTSGKPIMTGMEAIRGKEED 936
TGL + TTDA+G DH+IVI V D HSLDS+CP GVSPCLADGAL V LDG A+ AP V GP V ISA NLPGACRSFGFE+YWERKK E+A G RL S +M++WILGDPTATNM EC EYV A GG+F H EH SFQI+TP TIR + MN+A+D +S A G+LGET PT D +G PIM GM +IRG ++D
Sbjct: 48 TGLGITTTDANGLDHTIVITVTDPHSLDSACPVGVSPCLADGALTVQLDGKHALLAPGEVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSDWILGDPTATNMAECTEYVVEATRNGLGGLFEHDLEHTSFQILTPMGTIRRAMAAFTSFPC----------------MNLAIDRIDVSPNATGILGETQKPTLDANGSPIMQGMASIRGAQDD 264
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.690e-29 Identity = 87/250 (34.80%), Postives = 129/250 (51.60%), Query Frame = 1
Query: 244 VRTGLSVLTTDADGFDHSIVIEVADAHSL-DSSCPAGVSPCLADGALRVVLDGDEA----MFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILG-DPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAA-KGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYFV 972
+ T L++++ +G+ S+VIEV + +++ CP GVSPCLA+G LR+++DG E F+ + +SA+NLP CR FG + W R + +L S+ EWIL D C +Y+A E + Q+ HA F+I TP T+RL+ G +Q D LPD WQM++ +D + A G+LGET P +G+ +M G +A RG EDYRV LG +F
Sbjct: 65 LMTSLAIMS---EGY--SVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIA-----ENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFA 304
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.550e-28 Identity = 89/249 (35.74%), Postives = 130/249 (52.21%), Query Frame = 1
Query: 244 VRTGLSVLTTDADGFDHSIVIEVADAHSL-DSSCPAGVSPCLADGALRVVLDG---DEAMFAPSTVSLGPN-VGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKLSMAEWILG-DPTATNMGECVEYVARAEGEEGGVFAHQSEHASFQIVTPEATIRLSHGRLHQVAMRDPTDRFDLPDHLTWQMNMAVDHNHLSRAA-KGVLGETFVPTRDTSGKPIMTGMEAIRGKEEDYRVKGPLGTYF 969
+ T L+VL+ HS+VIEV + +++ + CP GVSPCLA+G LR+++D DE + V + + +S++NLP C+ FG ++ W R + L S+ EWIL D G C +Y+A E + QS+HA F+I TP T+RL+ G +Q D LPD WQM + +D + A G+LGET P D +G+ +M G +A RG EDYRV L +F
Sbjct: 164 LMTSLAVLSKG-----HSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIA-----ENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHF 402 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig606.16707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig606.16707.1 >prot_Ecto-sp13_S_contig606.16707.1 ID=prot_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp MFAPSTVSLGPNVGISAANLPGACRSFGFEKYWERKKLEHANHGHRLGSKback to top mRNA from alignment at Ecto-sp13_S_contig606:7796..12171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig606.16707.1 ID=mRNA_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig606:7796..12171+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig606:7796..12171+ >mRNA_Ecto-sp13_S_contig606.16707.1 ID=mRNA_Ecto-sp13_S_contig606.16707.1|Name=mRNA_Ecto-sp13_S_contig606.16707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig606:7796..12171+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |