prot_Ecto-sp13_S_contig11958.1670.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11958.1670.1
Unique Nameprot_Ecto-sp13_S_contig11958.1670.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: Q8QN76_ESV1K (EsV-1-214 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN76_ESV1K)

HSP 1 Score: 137 bits (346), Expect = 8.280e-41
Identity = 73/83 (87.95%), Postives = 75/83 (90.36%), Query Frame = 0 
Query:    1 APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRTRCAPIFFLLLEGSVAVFMVWRA 83
            APA+Q A ADAPT EQ EASGGIDAAAETGGDDGLDTTDRGNGW+VVGKSRRTTTG EVRT  APIF LLLEGSVAVFMVWRA
Sbjct:    4 APAEQGAPADAPTTEQREASGGIDAAAETGGDDGLDTTDRGNGWYVVGKSRRTTTGSEVRTHWAPIFLLLLEGSVAVFMVWRA 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: A0A6H5JUD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.090e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 
Query:   23 IDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT 61
            IDAAA+TGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT
Sbjct:   68 IDAAAKTGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-15
Identity = 45/62 (72.58%), Postives = 45/62 (72.58%), Query Frame = 0 
Query:    1 APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRTR 62
            APAKQ            E SGGIDAAAETG DDGLDTTDRGNGWHVVGKSRRTTTGGE   R
Sbjct:  204 APAKQXXXXXXXXXXXXETSGGIDAAAETGCDDGLDTTDRGNGWHVVGKSRRTTTGGEGTNR 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QN76_ESV1K8.280e-4187.95EsV-1-214 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JUD6_9PHAE2.090e-1797.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L073_9PHAE2.900e-1572.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 82..83
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 59..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11958contigEcto-sp13_S_contig11958:4351..4602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11958.1670.1mRNA_Ecto-sp13_S_contig11958.1670.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11958 4351..4602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11958.1670.1 ID=prot_Ecto-sp13_S_contig11958.1670.1|Name=mRNA_Ecto-sp13_S_contig11958.1670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKS
RRTTTGGEVRTRCAPIFFLLLEGSVAVFMVWRA*
back to top