mRNA_Ecto-sp13_S_contig11958.1670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11958.1670.1
Unique NamemRNA_Ecto-sp13_S_contig11958.1670.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: Q8QN76_ESV1K (EsV-1-214 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN76_ESV1K)

HSP 1 Score: 137 bits (346), Expect = 8.280e-41
Identity = 73/83 (87.95%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRTRCAPIFFLLLEGSVAVFMVWRA 249
            APA+Q A ADAPT EQ EASGGIDAAAETGGDDGLDTTDRGNGW+VVGKSRRTTTG EVRT  APIF LLLEGSVAVFMVWRA
Sbjct:    4 APAEQGAPADAPTTEQREASGGIDAAAETGGDDGLDTTDRGNGWYVVGKSRRTTTGSEVRTHWAPIFLLLLEGSVAVFMVWRA 86
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BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: A0A6H5JUD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.090e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   67 IDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT 183
            IDAAA+TGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT
Sbjct:   68 IDAAAKTGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRT 106
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BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-15
Identity = 45/62 (72.58%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKSRRTTTGGEVRTR 186
            APAKQ            E SGGIDAAAETG DDGLDTTDRGNGWHVVGKSRRTTTGGE   R
Sbjct:  204 APAKQXXXXXXXXXXXXETSGGIDAAAETGCDDGLDTTDRGNGWHVVGKSRRTTTGGEGTNR 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11958.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QN76_ESV1K8.280e-4187.95EsV-1-214 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JUD6_9PHAE2.090e-1797.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L073_9PHAE2.900e-1572.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11958contigEcto-sp13_S_contig11958:4351..4602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.6134074-CDS-Ecto-sp13_S_contig11958:4350..46021681462633.6134074-CDS-Ecto-sp13_S_contig11958:4350..4602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11958 4351..4602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11958.1670.1prot_Ecto-sp13_S_contig11958.1670.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11958 4351..4602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11958.1670.1

>prot_Ecto-sp13_S_contig11958.1670.1 ID=prot_Ecto-sp13_S_contig11958.1670.1|Name=mRNA_Ecto-sp13_S_contig11958.1670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
APAKQEAAADAPTMEQAEASGGIDAAAETGGDDGLDTTDRGNGWHVVGKS
RRTTTGGEVRTRCAPIFFLLLEGSVAVFMVWRA*
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mRNA from alignment at Ecto-sp13_S_contig11958:4351..4602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11958.1670.1 ID=mRNA_Ecto-sp13_S_contig11958.1670.1|Name=mRNA_Ecto-sp13_S_contig11958.1670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:4351..4602- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCCAAGCAGGAGGCCGCCGCTGACGCCCCCACCATGGAGCAGGC
GGAGGCCTCCGGCGGCATCGATGCTGCGGCGGAGACGGGTGGCGACGATG
GACTCGACACCACCGATCGTGGAAACGGGTGGCATGTCGTGGGCAAGAGT
CGTCGCACGACGACCGGTGGCGAGGTGCGTACGCGTTGTGCCCCCATTTT
TTTTCTGTTGTTGGAAGGTAGTGTGGCAGTCTTCATGGTATGGCGCGCCT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11958:4351..4602-

>mRNA_Ecto-sp13_S_contig11958.1670.1 ID=mRNA_Ecto-sp13_S_contig11958.1670.1|Name=mRNA_Ecto-sp13_S_contig11958.1670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:4351..4602- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCCAAGCAGGAGGCCGCCGCTGACGCCCCCACCATGGAGCAGGC
GGAGGCCTCCGGCGGCATCGATGCTGCGGCGGAGACGGGTGGCGACGATG
GACTCGACACCACCGATCGTGGAAACGGGTGGCATGTCGTGGGCAAGAGT
CGTCGCACGACGACCGGTGGCGAGGTGCGTACGCGTTGTGCCCCCATTTT
TTTTCTGTTGTTGGAAGGTAGTGTGGCAGTCTTCATGGTATGGCGCGCCT
GA
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