mRNA_Ecto-sp13_S_contig6054.16696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6054.16696.1
Unique NamemRNA_Ecto-sp13_S_contig6054.16696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6054.16696.1 vs. uniprot
Match: A0A6H5KDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.760e-43
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:   70 MCDTGPVPPSPCVRPLLSALHLWRVTPTQESLRKIIRPSKEQLPIVLRATRMAGRKVVLSVWAVSDGEAMTVSVYDHK 303
            MCDTGPVPPSPCVRPLLSALHLWRVTPT+ESLRKIIRPSK QLPIVLRATRMAGRKVVLSVWAVSDGEAMTVSVYDHK
Sbjct:    1 MCDTGPVPPSPCVRPLLSALHLWRVTPTEESLRKIIRPSKGQLPIVLRATRMAGRKVVLSVWAVSDGEAMTVSVYDHK 78
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BLAST of mRNA_Ecto-sp13_S_contig6054.16696.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.700e-41
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:   70 MCDTGPVPPSPCVRPLLSALHLWRVTPTQESLRKIIRPSKEQLPIVLRATRMAGRKVVLSVWAVSDGEAMTVSVYDHK 303
            MCDTGPVPPSPC RPLLSALHLWRVTPTQESLRKIIRPSK QLPIVLRATRMAGRKVVLSVWAVSDGEA+TVSVYDHK
Sbjct:    1 MCDTGPVPPSPCARPLLSALHLWRVTPTQESLRKIIRPSKGQLPIVLRATRMAGRKVVLSVWAVSDGEAITVSVYDHK 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6054.16696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDQ5_9PHAE1.760e-4397.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGS7_ECTSI2.700e-4196.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6054contigEcto-sp13_S_contig6054:4166..5004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size307
Hectar predicted targeting categorychloroplast
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.5287704-CDS-Ecto-sp13_S_contig6054:4165..44021681463843.5287704-CDS-Ecto-sp13_S_contig6054:4165..4402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 4166..4402 +
1681463843.540216-CDS-Ecto-sp13_S_contig6054:4936..50021681463843.540216-CDS-Ecto-sp13_S_contig6054:4936..5002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 4937..5002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6054.16696.1prot_Ecto-sp13_S_contig6054.16696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6054 4166..5002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6054.16696.1

>prot_Ecto-sp13_S_contig6054.16696.1 ID=prot_Ecto-sp13_S_contig6054.16696.1|Name=mRNA_Ecto-sp13_S_contig6054.16696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
VALNILCLLAFLSRSSPSFLPYFMCDTGPVPPSPCVRPLLSALHLWRVTP
TQESLRKIIRPSKEQLPIVLRATRMAGRKVVLSVWAVSDGEAMTVSVYDH
K
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mRNA from alignment at Ecto-sp13_S_contig6054:4166..5004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6054.16696.1 ID=mRNA_Ecto-sp13_S_contig6054.16696.1|Name=mRNA_Ecto-sp13_S_contig6054.16696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6054:4166..5004+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCCCTCAATATTCTCTGCCTGCTGGCTTTTCTCTCTCGCTCTTCGCC
TAGTTTCCTTCCGTACTTCATGTGCGATACCGGGCCGGTGCCACCTTCGC
CATGCGTGCGGCCTCTGCTATCGGCACTGCACCTGTGGCGAGTGACGCCG
ACACAGGAATCACTCCGCAAGATCATTCGGCCGTCGAAGGAGCAATTGCC
GATTGTCCTGAGAGCTACTCGTATGGCCGGTCGAAAAGTGCGTCATCACT
CCACGGGTTGCTCCCACATGTGTAGATTAGTTGCACAGGGACTCCACTGT
TCTCTGGTAGTATCACCGCCACTTCTGGAAGATGTTCGCCAATTGTCGGC
GTACGTACATTGCTCATACCTTCAGCGCGACCGGAGTGCGATCGAAGCGC
CCAAGTCATGCTGTTTGCGTAAAGAGATAATACAGCCTCAAGCAATATCA
TGCAGGATTTGTCGCGTAGCATGCGTAAACCTTTCACCATACTTGGCACC
CTACCCGTAGGCTGTGGATGCTTCTATAGTACTCGACACGTTACTGCAGA
CTAGACTCCTAACGTACGACAGCGAGAGACGCCGTCGTTGCTGCTCTGCT
TGTCCGTAATGACACCATATGTCGGAAGTAAAATGCTCGCCAAAGGATGT
GGAATGGAGCACCAAGAAGGTAAAGAAGGGCTTCAACTGTCCCACCTCAC
ATGGGCACCGCCCTCAATGCACCATTCACACGATCAACAAATTCTTGACT
ATGTCGGCTGTTGCCCTATAGGTGGTCCTGAGCGTGTGGGCCGTGTCAGA
CGGGGAAGCCATGACTGTCAGCGTCTATGATCACAAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6054:4166..5004+

>mRNA_Ecto-sp13_S_contig6054.16696.1 ID=mRNA_Ecto-sp13_S_contig6054.16696.1|Name=mRNA_Ecto-sp13_S_contig6054.16696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6054:4166..5004+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCCCTCAATATTCTCTGCCTGCTGGCTTTTCTCTCTCGCTCTTCGCC
TAGTTTCCTTCCGTACTTCATGTGCGATACCGGGCCGGTGCCACCTTCGC
CATGCGTGCGGCCTCTGCTATCGGCACTGCACCTGTGGCGAGTGACGCCG
ACACAGGAATCACTCCGCAAGATCATTCGGCCGTCGAAGGAGCAATTGCC
GATTGTCCTGAGAGCTACTCGTATGGCCGGTCGAAAAGTGGTCCTGAGCG
TGTGGGCCGTGTCAGACGGGGAAGCCATGACTGTCAGCGTCTATGATCAC
AAG
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