mRNA_Ecto-sp13_S_contig6043.16678.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6043.16678.1
Unique NamemRNA_Ecto-sp13_S_contig6043.16678.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 3.490e-136
Identity = 208/212 (98.11%), Postives = 210/212 (99.06%), Query Frame = 1
Query:  454 EKDYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ 1089
              DYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKE+SASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMC+VAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ
Sbjct:   15 SSDYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEESASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCVVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ 226          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 2.420e-133
Identity = 207/212 (97.64%), Postives = 208/212 (98.11%), Query Frame = 1
Query:  454 EKDYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ 1089
              DYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKE+SASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAW KRAVPEKTKAAVVGACTTLITAFACL VFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ
Sbjct:  104 SSDYSAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEESASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWTKRAVPEKTKAAVVGACTTLITAFACLAVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESSPQ 315          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: B7G622_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G622_PHATC)

HSP 1 Score: 114 bits (286), Expect = 3.130e-25
Identity = 71/174 (40.80%), Postives = 104/174 (59.77%), Query Frame = 1
Query:  472 WPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLG--VPLSAFGTLGYLAAAGLAVVPLFAKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKRAVP-EKTKAAVVGACTTLITAFACLTVFVV 984
            W    R+ +G +AS G +E+AYLT  K+    +D+LCGA GGC  +LNGPY+ + G  +PLS  G + Y   A LAV P+   E++   D++ R LL   TT MGVFS++L+S+L   +   CP+C+ SA  S+ +  +AW+  A+P E+ K  V  +    + AFA  TVF V
Sbjct:   81 WNPKLRRVMGLVASAGMIETAYLTLTKLTDK-VDILCGADGGCSSILNGPYAFIPGTNIPLSLLGFVAYATVAFLAVEPIRTNEEN---DQSNRVLLTTATTIMGVFSVFLMSILFGVLHESCPYCIASAVFSIVLAKLAWLGGALPQERVKEGVATSAGGALAAFAAATVFYV 250          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A7S2ZFF5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFF5_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 5.880e-23
Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  409 GFVRILRCGCVPLLCEKDY----SAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFA--KEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSM 873
            G  R+  C   P   E+      S    + RK +  ++  G LE+A LTY+K+   G+  LC ++ GCL+VL+GPYS V G+PL+ FG  GY AA  L V PL A  K+ + + +K TR LL+ + +AM  FS YL+ +L   I   CPWC  SA LS SM
Sbjct:   43 GSGRLRMCESGPESSERSVVPQESGLRELPRKILIGISGAGLLETALLTYKKVFGGGIASLC-STAGCLEVLDGPYSTVFGIPLTLFGMGGYAAALALGVYPLLASDKKDTEAREKATRGLLVTLASAMTSFSTYLMIVLVGVIQGWCPWCFFSAALSGSM 202          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A7S3E8J2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E8J2_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 1.620e-22
Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  409 GFVRILRCGCVPLLCEKDY----SAWPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFA--KEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSM 873
            G  R+  C   P   E+      S    + RK +  ++  G LE+A LTY+K+   G+  LC ++ GCL+VL+GPYS V G+PL+ FG  GY AA  L V PL A  K+ + + +K TR LL+ + +AM  FS YL+ +L   I   CPWC  SA LS SM
Sbjct:   43 GSGRLRMCESGPESSERSVVPQESGLRELPRKILIGISGAGLLETALLTYKKVFGGGIASLC-STAGCLEVLDGPYSTVFGIPLTLFGMGGYAAALALGVYPLLASDKKDTEAREKATRGLLVTLASAMTSFSTYLMIVLVGVIQGWCPWCFFSAALSGSM 202          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A7S0J935_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J935_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 3.210e-21
Identity = 81/210 (38.57%), Postives = 112/210 (53.33%), Query Frame = 1
Query:  487 RKAIGALASVGALESAYLTYQKIHPAG--LDLLCGASGG-CLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLF--------AKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETALDIRQAEASPGELVGVQLVAPPLIDTESS 1083
            R A+G LA  G +E+A +TY K+   G  ++ LC   GG C DVLNGP+S VLG+PLSA G LGY AAA LA  PLF        A+   A+ D  +   LL+ ++ M  FS  L++LL   +         SA  S +MC VAW    +P +T+A+VV A   L+T      +FV+    L++ QA+  P         APP+I   S+
Sbjct:    6 RAAVGGLAGAGVVETALITYDKLWGDGSAVESLCAVGGGGCADVLNGPWSTVLGLPLSALGLLGYSAAALLAAAPLFDGSAAGGRARAGGAAEDTFSAEALLLCSSVMATFSACLMALLV-ALRSXXXXXXASALTSAAMCAVAWRAPLLPSRTEASVVVASGALVTVAVAGGLFVLKTRELEL-QADELPRR-------APPIIAVSSA 206          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: R7Q9N1_CHOCR (VKc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9N1_CHOCR)

HSP 1 Score: 101 bits (251), Expect = 4.590e-20
Identity = 74/180 (41.11%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  487 RKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEQSASV-------------DKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSM-CIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVV 984
            RK + A++ VGA E++YLT+ KI  +    +C A+ GCLDVL+GP+S+ LG+PL+  G L Y   A LAV PL A E+                 D  TR +LL ++TA+ +FS YL+ LL F I   CP+CL SA LS S+  + A++ RAVP    A  VG  +T +++ A   +F V
Sbjct:  144 RKILTAVSMVGAAETSYLTFNKIFSSP-GAIC-ATQGCLDVLSGPFSSFLGIPLTLLGALAYGVFAYLAVWPLSADEEEDEEGTLLTPEEVYGIRDAATRPILLALSTALFIFSCYLMFLLFFVIQSYCPYCLFSAVLSTSLFMLTAFVGRAVPRVGDALRVGIVSTGVSSIAAALLFFV 321          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: L8LS59_9CYAN (Putative membrane protein n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LS59_9CYAN)

HSP 1 Score: 99.4 bits (246), Expect = 6.080e-20
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  481 INRKAIGALASVGALESAYLTYQKIHPAGLDLLC---GASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAK-EQSASVDKTTRS----LLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKR 897
            ++R  IGA+A  GA+ +AYLT+ K+   G +++C   G +G C DVLNGPY  V G PLS FG L YL+ A  A+ PL    EQ+ S+ K   +    LLL  +TAM VFS YL+ LL FKI   C +C+ SA  +LSM ++  + R
Sbjct:   13 LSRPLIGAIAIAGAVLTAYLTFTKLF--GGEVVCTAEGTAGSCGDVLNGPYGTVFGQPLSLFGCLAYLSMAVFALAPLLINPEQNKSLRKNLENWTWLLLLAGSTAMAVFSGYLMYLLAFKIQTLCFYCIGSALFALSMFVLTLIGR 157          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A1Z5JS18_FISSO (VKc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS18_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 8.620e-20
Identity = 77/218 (35.32%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  460 DYSAWPAINRKAIGALASVGALESAYLTYQKI-HPAGLDLLCGASGG-CLDVLNGPYSNVLG--VPLSAFGTLGYLAAAGLAVVPLFAKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETA-LDIRQAEASPGELVG--VQLVA---PPLIDTESS 1083
            D   W    R+ +G +A  G LE+++LTY K+   +  + LC  +GG C  VLNGPY+ + G  +PL+A G + Y+  A LA+ P  A       D   R LL  V T+MGVFS++L++LL   +   C +C+ SA  S+SM  + W+   +PE+   A  G   ++ + F      +V  T+ +    A    G+LVG    LVA   PP I T SS
Sbjct:   40 DEECWNPRLRRIVGGIAVAGTLETSFLTYSKLAESSAAEQLCSITGGSCSSVLNGPYAVIPGSEIPLAAVGVVAYVTVAALALGPTLANSPKDDTDN--RILLTAVATSMGVFSVFLMTLLFGVLKESCAFCVASAIFSISMAKLLWLGGCLPEEN--AKTGVSASISSGFVAFMAAIVLFTSNIPPTSAVNFAGQLVGSSTSLVAGESPPTITTTSS 253          
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Match: A0A1X6NJ04_PORUM (VKc domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJ04_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 3.160e-19
Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  487 RKAIGALASVGALESAYLTYQKIH--PAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEQSASV---DKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCI-VAWMKRAVPE 909
            R+ + ALA  G  E+ +LT  K    PA +   CG  G C+DVL+GPYS+ LG+PLS FG L Y A A LA  PL A   S +    D  TR L+++++ AM  FS YLL+LL   I  PC +CLTSAG+  ++ +  A + RAVP+
Sbjct:   14 RRVLTALALFGVGETTFLTATKAFSTPAAI---CGTRG-CVDVLSGPYSSFLGIPLSLFGVLSYGAFAALAGWPLAAPPTSPAFVRRDAATRPLMVLLSAAMAAFSAYLLTLLAVVIRSPCAYCLTSAGVCAALFLGTALIGRAVPD 156          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6043.16678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E2_ECTSI3.490e-13698.11Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE2.420e-13397.64VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
B7G622_PHATC3.130e-2540.80Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2ZFF5_9RHOD5.880e-2341.61Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E8J2_9RHOD1.620e-2241.61Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0J935_9EUKA3.210e-2138.57Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R7Q9N1_CHOCR4.590e-2041.11VKc domain-containing protein n=1 Tax=Chondrus cri... [more]
L8LS59_9CYAN6.080e-2044.90Putative membrane protein n=1 Tax=Xenococcus sp. P... [more]
A0A1Z5JS18_FISSO8.620e-2035.32VKc domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A1X6NJ04_PORUM3.160e-1944.90VKc domain-containing protein (Fragment) n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6043contigEcto-sp13_S_contig6043:142..3916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score403.7
Seed ortholog evalue5.9e-110
Seed eggNOG ortholog2880.D7G9E2
Model size1089
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
Exons5
EggNOG free text desc.Vitamin K epoxide reductase family
EggNOG OGs2QRER@2759,COG4243@1
Ec32 ortholog descriptionpossible vitamin K epoxide reductase, plastid protein
Ec32 orthologEc-28_000580.1
Cds size690
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6043.16678.1prot_Ecto-sp13_S_contig6043.16678.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6043 541..3916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.0097773-UTR-Ecto-sp13_S_contig6043:141..5401681463842.0097773-UTR-Ecto-sp13_S_contig6043:141..540Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6043 142..540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.031703-CDS-Ecto-sp13_S_contig6043:540..7771681463842.031703-CDS-Ecto-sp13_S_contig6043:540..777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6043 541..777 +
1681463842.0455754-CDS-Ecto-sp13_S_contig6043:1486..16091681463842.0455754-CDS-Ecto-sp13_S_contig6043:1486..1609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6043 1487..1609 +
1681463842.0560248-CDS-Ecto-sp13_S_contig6043:1869..19621681463842.0560248-CDS-Ecto-sp13_S_contig6043:1869..1962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6043 1870..1962 +
1681463842.0663934-CDS-Ecto-sp13_S_contig6043:2870..30291681463842.0663934-CDS-Ecto-sp13_S_contig6043:2870..3029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6043 2871..3029 +
1681463842.0763605-CDS-Ecto-sp13_S_contig6043:3838..39161681463842.0763605-CDS-Ecto-sp13_S_contig6043:3838..3916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6043 3839..3916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6043.16678.1

>prot_Ecto-sp13_S_contig6043.16678.1 ID=prot_Ecto-sp13_S_contig6043.16678.1|Name=mRNA_Ecto-sp13_S_contig6043.16678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MLRGFVRILRCGCVPLLCEKDYSAWPAINRKAIGALASVGALESAYLTYQ
KIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVV
PLFAKEQSASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLT
SAGLSLSMCIVAWMKRAVPEKTKAAVVGACTTLITAFACLTVFVVTETAL
DIRQAEASPGELVGVQLVAPPLIDTESSPQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6043:142..3916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6043.16678.1 ID=mRNA_Ecto-sp13_S_contig6043.16678.1|Name=mRNA_Ecto-sp13_S_contig6043.16678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6043:142..3916+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAATAGTGCCGGGTGCCCGATTTAGTGCCGGTGAACGCTCTGTGCACGT ACCGGCACTAAAAGGGTCCCTCGACTGTACAGCACAAATCGCTTGAACAA TCGTTGCTTTGAGGTGGTGGACAAACACCCAAAATGAACTTTTTGACGCC AGTGATGCCTATGCGCTGCTGGCGGACCGGCAACTGCAGAACTGCTGTCC CTCGTCACGTCTGTGAATCAGGGTTGCTATCATGCCCGCAAACCTGCACA AAGAACCACGAATGTTGTCTCCTGGATTCCTTGTGATCAACCTTGGGACC TCTGGTGCTCGTCGTGCGCACCGTCTTGCTTCGTAAGGGTGTCATGACGG GCTACGTTCCCCAAACTACCGCTCAAACGGGAGTGTATCTTAACATGCCA TGCTGCGTGGGTTCGTGCGCATTTTGCGATGTGGTTGTGTGCCGCTGCTG TGTGAAAAAGACTACTCGGCATGGCCAGCGATCAACCGCAAGGCGATCGG GGCGTTGGCCAGCGTCGGGGCCCTGGAGTCGGCGTACCTCACGTACCAGA AGATCCACCCGGCAGGGCTCGATCTTCTGTGCGGGGCCAGCGGAGGCTGC CTCGATGTCCTCAACGGGCCGTACTCGAACGTATTGGTGAGAGGGCCCGC GATGGGAGTGCCGCTCAAAGAAGTTATTTTCTTGTTTGTCTACGTGAGTC GCCCGCCCCCGCCCCCGCGCTGATAGGCGAGGAACACGACGTACTGTACT CCCCATTTTTTGTCGAGATACGAGGGTGTTGAGCCCCGAGGGTACGGCTA TCGATGAGGACGAGGGACCGACCGTACCCCATACCGTGCTTGGGCTTGGT TGGCTCTCGCCCCGCTCTGCGGGAGCGCAGCTTTGTGAAGCTTTTTCGTA GATTTTGTTTGGTGCTGGTGCTGTCGTTTGTCGCCGATGGTGTTTTGGTC TGTCTTATCGGAATCGTTTTCCTCCAATCGTTGACCGTGATGGGCCATCG GCACTTTATTTTTCTACATGCTCTGATCATTTCGCCGTTTCTTAATCTAC CTTCTTCGTTCATGTGTTTACTTTTTCACGAAATGTGTGTTGTGTCGGTG TTTCGTCACCTCCTCCTCTTTATGCTTGTCTCCGTTTATTAGTTTTTCCT CGTGTATGCTTCTTGAACTTTGTTCCCCCCTTTCTGTGTTGCTCGTATGC TGGTCGTTCTCTCGCTTCTCGTGCCCGTTCATGTCACTTGGACCACAACT TGAAACGAAATTTCCAACTTTCTCCATGTCGATTGAAATTGGCATCTGCG ATTTTTGTGCGATTTGGACTTAATGCCCTCCGCGCGCACGTGCAGGGCGT CCCGTTGTCAGCGTTCGGCACGTTGGGGTATCTCGCGGCGGCAGGGTTGG CCGTCGTTCCGCTGTTTGCCAAGGAGCAGTCTGCTTCAGTCGACAAGACC ACGCGCTCGTTGTTGCTGGTGAGGGCTTTCTACATGATGGTGCTGTTGCT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTTTTTGTGGGTGTTTA TGTCGGTTCTGAATTGTATCCAAAAGAAGTCGAACTTTGTCGTTGATGTT GGTGGTGTCGATCTGTGCGTATCATCTGCTACCAAGAAGTCAATTGTTTG AACGTGCAGCATTGTGGCATGCACGCCTCTCCCGCCACCATCTCGGCGTT GCGATGATGCGATGACCCCACCATGCAGGTTGTAACCACTGCCATGGGCG TGTTCTCGCTGTACCTTTTGAGCTTACTCAAGTTCAAGATCGGCTACCCA TGCCCCTGGTGTCTTACGTCGGTGAGTGAATTGAGCGTAGATTTCCCATA CCCCAAGGAGATGAAAGCGCGTGAATGGTGGCGCTTGTTGTGGGTGGGCT TTGTGTGTACCATCCAACATGCGGTGTAGTGGAACGAAACACGTTTCGCT GCGCTGGTTGCAAATGTTGAGCGCGTTTGTTTTTCTTTCCCGATACTGTA CGCACGGTTGGCGACGCACAGGGGCCGTCCGGAAAATGGACGTGAGGTCC GTGTGTTCACGTTTATATTGTGAACGGTTAAGCCCCTCGGCAAGACCAAA ATGTGCGTCGCTCGATGTGGGCACGGTATTCTAGCGTCTCCAGGAAAATG CAAGCAGTGGTCCTAGTCAATGTTCCCATGCTGCAGCACCACAGCAGGGG AACGGGGCCGGTTAGTGCCGGTGCTCGGTATTGTGCCGGGTTGTGCGTCT TGTGGAACCTTCGTCCAATCGAGGGAGTTCTGTGAGAAACCCTCGTATTA AGTCTTCTATCCTCAGAGATGCAAGACCGTTGGTTGACACACCACACAGC TCTTCATTATTCAGGACTGACGTCGACGAGGCAGCCACATGATCATCCGA TGAAGTCACGCCGCACCCCTCTTCACGAACGTCACACGTGAACCGACACT TACTTCTTTTCGAACCAATCATGTACGACCTTGTAAATTGCCGCAGTAGT TCTGTGTCCCACTTTATTCCACAGTCTGGTGGGGCACAGACTGAATCATC AAATTATTGTGTACTTTTCCGGTGTCCGGCATATTACCGGCCAATTCTGG ACACCTACCGGCATTAGGCAACTCCCCACACTACTGTTGTTCATTTGACT CGCTGTCCCTGTCACTTATCTCTATCTGTCTCCCCCCTTCTCCCTGCGAT GCGGCCAACGCTTTTTCCTCTTTTGGTAGGCTGGGCTATCGCTCTCGATG TGCATCGTGGCGTGGATGAAGAGGGCCGTACCTGAGAAGACCAAGGCAGC GGTCGTGGGGGCCTGCACGACGCTCATCACCGCCTTCGCGTGCTTGACTG TCTTCGTGGTCACCGAGACTGCTCTCGACATCCGACAGGTATTCGTCTAT TGCAGACAAGCCGCAAGGAGAGACAGGAAGTATATGTATGGTGCACACGC ATTTTGAGAGAGGGAGAGAGAGACAGAGACAGAGACAGCGAGAGAGAGAG AGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAT AGGAGAGAGAAAGATTGTCCGCGACGAGGCTGTTAAGCGAAAATTGCTTT TCAAGCCCCCCGTGGTTATCTGTGTGGTTCCCGTAAATAGGAATCGGGGC TTGTTGGCTCTTGATTTATGAGCGGATCTTGTTTTAAGGGGCTCGTTCAA ATCCTGTTGGTGGCTGTACAGAAGCCGGAGTTCGTTTCGCGTGGGTTGTT CGCGGCCTGAGAGTAAGGCCCTGCATGTTTATTTCACGAACGTAGTTTCC GCTCGAGACAACAAACATTTCTTTTTGTATGCCTCACATGCGGCGTACTT CGGGCCTTGTTACGCCAATCTTTGCGGAAACATGTTGCTGACATTTAAGT GCTGTCTTGCAGTGCATGCGAGACTACAAACGCACTATCATTTCCGGCAC TGGCAGACGAGGGTGGGTCAGCCGTTCCCCAGCTTGCCGCGCTTCACTAC GTGCGCATTTTCTCTCGTAACGCGTGCTCTATCCATGGCTACGGTGATAG TTTTTGTGGGCTCAGGATCGCCTGACAGCGTTTTTGTGTTCTCCTCCCTC TGCTATACCTTTGGCTTGCGGAGTCGAAACGCCTTGATTTCGTTGACTAC TCCGCTGTCCTATCGTGCCCTGTCGTGCCCTGCTTGGATGCACCAAGGCG GAGGCATCCCCCGGCGAGCTTGTCGGGGTCCAGCTCGTGGCACCGCCGTT GATCGACACGGAGTCATCGCCTCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6043:142..3916+

>mRNA_Ecto-sp13_S_contig6043.16678.1 ID=mRNA_Ecto-sp13_S_contig6043.16678.1|Name=mRNA_Ecto-sp13_S_contig6043.16678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6043:142..3916+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGTGGGTTCGTGCGCATTTTGCGATGTGGTTGTGTGCCGCTGCT
GTGTGAAAAAGACTACTCGGCATGGCCAGCGATCAACCGCAAGGCGATCG
GGGCGTTGGCCAGCGTCGGGGCCCTGGAGTCGGCGTACCTCACGTACCAG
AAGATCCACCCGGCAGGGCTCGATCTTCTGTGCGGGGCCAGCGGAGGCTG
CCTCGATGTCCTCAACGGGCCGTACTCGAACGTATTGGGCGTCCCGTTGT
CAGCGTTCGGCACGTTGGGGTATCTCGCGGCGGCAGGGTTGGCCGTCGTT
CCGCTGTTTGCCAAGGAGCAGTCTGCTTCAGTCGACAAGACCACGCGCTC
GTTGTTGCTGGTTGTAACCACTGCCATGGGCGTGTTCTCGCTGTACCTTT
TGAGCTTACTCAAGTTCAAGATCGGCTACCCATGCCCCTGGTGTCTTACG
TCGGCTGGGCTATCGCTCTCGATGTGCATCGTGGCGTGGATGAAGAGGGC
CGTACCTGAGAAGACCAAGGCAGCGGTCGTGGGGGCCTGCACGACGCTCA
TCACCGCCTTCGCGTGCTTGACTGTCTTCGTGGTCACCGAGACTGCTCTC
GACATCCGACAGGCGGAGGCATCCCCCGGCGAGCTTGTCGGGGTCCAGCT
CGTGGCACCGCCGTTGATCGACACGGAGTCATCGCCTCAG
back to top