mRNA_Ecto-sp13_S_contig60397.16671.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60397.16671.1
Unique NamemRNA_Ecto-sp13_S_contig60397.16671.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A6H5K5W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.400e-26
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPIR 147
            MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKP+R
Sbjct:  123 MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPMR 171
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: D7G2B3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.730e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPIR 147
            MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPIR
Sbjct:  196 MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPIR 244
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A835ZA45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA45_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.130e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKF 129
            VSGNI+SSA+NEERI CHFQGKQYLGWKA R+K+KEL+EKF
Sbjct:  190 VSGNIMSSADNEERIMCHFQGKQYLGWKACREKVKELREKF 230
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S1BBZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBZ4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.260e-11
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKP 141
            VSGN +SS +  ERI  HF GKQY+GWK VRDKLKEL +K+  +P
Sbjct:  112 VSGNFMSSRDANERIAAHFAGKQYVGWKKVRDKLKELDKKYAGRP 156
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S3UYV8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYV8_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 4.530e-10
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEK 126
            +SGN++SS +N+ERI  HFQGK Y+GWKAVRDK+ E++E+
Sbjct:  198 ISGNLMSSTDNDERIDAHFQGKLYIGWKAVRDKVAEIEER 237
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S2LLV4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLV4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.210e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKP 141
            VSGN +SS + +ERI  H+ GKQY+GWK VR+K KEL EK+ N P
Sbjct:  312 VSGNFMSSRDADERIAAHYAGKQYVGWKMVREKCKELDEKYRNLP 356
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S2D4R8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4R8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.050e-9
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 LVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELK 120
            +VSGN +++ +N +R+RCHF+GKQY GWK +RDKL EL+
Sbjct:  200 VVSGNFMNATDNGDRLRCHFEGKQYQGWKRIRDKLAELR 238
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S1CYK9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYK9_CYCTE)

HSP 1 Score: 57.4 bits (137), Expect = 3.460e-9
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKF 129
            VSGN +S+ + +ERI  H+ GKQY+GWK VRDKLKEL+  +
Sbjct:   34 VSGNFMSARDADERIAAHYAGKQYVGWKLVRDKLKELQSTY 74
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: B8BQQ5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQQ5_THAPS)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEK 126
            VSGN +SS + +ERI  H+ GKQY+GWK VRDKLKEL++K
Sbjct:  339 VSGNFMSSRDADERIAAHYAGKQYVGWKLVRDKLKELQKK 378
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BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Match: A0A7S2RM59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM59_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.180e-9
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 VSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELK 120
            VSGN ++S++N +R+RCHF+GKQY GW+ +RDKL  LK
Sbjct:  216 VSGNFMNSSDNGDRLRCHFEGKQYQGWRKIRDKLAVLK 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60397.16671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5W6_9PHAE6.400e-2697.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2B3_ECTSI7.730e-25100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZA45_9STRA1.130e-1582.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BBZ4_9STRA7.260e-1162.22Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S3UYV8_HETAK4.530e-1062.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LLV4_9STRA6.210e-1060.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2D4R8_9STRA2.050e-958.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1CYK9_CYCTE3.460e-958.54Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
B8BQQ5_THAPS4.060e-965.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2RM59_9STRA7.180e-960.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60397contigEcto-sp13_S_contig60397:546..695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.1
Seed ortholog evalue7.9e-20
Seed eggNOG ortholog2880.D7G2B3
Preferred nameLUC7L3
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.mRNA splice site selection
EggNOG OGsCOG5200@1,KOG0796@2759
Cds size150
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.3027444-CDS-Ecto-sp13_S_contig60397:545..6951681463841.3027444-CDS-Ecto-sp13_S_contig60397:545..695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60397 546..695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60397.16671.1prot_Ecto-sp13_S_contig60397.16671.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60397 546..695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60397.16671.1

>prot_Ecto-sp13_S_contig60397.16671.1 ID=prot_Ecto-sp13_S_contig60397.16671.1|Name=mRNA_Ecto-sp13_S_contig60397.16671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKFENKPIR*
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mRNA from alignment at Ecto-sp13_S_contig60397:546..695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60397.16671.1 ID=mRNA_Ecto-sp13_S_contig60397.16671.1|Name=mRNA_Ecto-sp13_S_contig60397.16671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60397:546..695+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGTGTCGGGCAACATCCTGTCCTCCGCCGAGAACGAGGAGCGCAT
CCGGTGCCACTTCCAGGGCAAGCAGTACCTCGGCTGGAAGGCCGTTCGGG
ACAAGCTGAAAGAGCTCAAGGAGAAGTTTGAGAACAAGCCCATCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60397:546..695+

>mRNA_Ecto-sp13_S_contig60397.16671.1 ID=mRNA_Ecto-sp13_S_contig60397.16671.1|Name=mRNA_Ecto-sp13_S_contig60397.16671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60397:546..695+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGTGTCGGGCAACATCCTGTCCTCCGCCGAGAACGAGGAGCGCAT
CCGGTGCCACTTCCAGGGCAAGCAGTACCTCGGCTGGAAGGCCGTTCGGG
ACAAGCTGAAAGAGCTCAAGGAGAAGTTTGAGAACAAGCCCATCAGGTAA
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