mRNA_Ecto-sp13_S_contig6035.16660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6035.16660.1
Unique NamemRNA_Ecto-sp13_S_contig6035.16660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: Q8QNM4_ESV1K (EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K)

HSP 1 Score: 907 bits (2345), Expect = 0.000e+0
Identity = 455/488 (93.24%), Postives = 467/488 (95.70%), Query Frame = 1
Query:    1 MEKSISQNLLGYVSRWQLETIEALQANNAVFFDMAWLFDGVFYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTHDAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATA-DTPPSNA--NDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKTNKSDCSVKNITVTASVVNFRHDRWRKKKVSASLSSGTAFEIPTILSSNTIGNNDTHGYLFDIERYPEYSPKGTWILMSLCIEK 1455
            MEK ISQNLLGYVSRWQLETIEALQANNA FFDMAWLFDGV+YRDC+ LYSSRSDYFKCLFSS+MRKG EEF+GVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYY LQGGM+VIRQLVMDVINPTNAIQALE+AMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSI GVSQICARDDLNIKEIDLLQCVYKLCEKK+SA+ + GGLGSAWALMT DAAE GSSLWS+IRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADA A DTPPS+A  NDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHS FIHCTVYHADRSLNVS NIHGKTNKSD SV NITVTASVVNFRHDRWRKK V ASLSSGTAF+IPTILSSNTI NNDTHGYLFDIERYPEYSPKGTWILMSLCIEK
Sbjct:    1 MEKYISQNLLGYVSRWQLETIEALQANNADFFDMAWLFDGVYYRDCKQLYSSRSDYFKCLFSSSMRKGTEEFEGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYSLQGGMNVIRQLVMDVINPTNAIQALEYAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSIPGVSQICARDDLNIKEIDLLQCVYKLCEKKVSADNKPGGLGSAWALMTDDAAERGSSLWSKIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADAAAADTPPSSASANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSVFIHCTVYHADRSLNVSGNIHGKTNKSDPSV-NITVTASVVNFRHDRWRKKNVLASLSSGTAFKIPTILSSNTIANNDTHGYLFDIERYPEYSPKGTWILMSLCIEK 487          
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 5.530e-110
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 1
Query:   55 ETIEALQANNAVFFDMAWLFDGVFYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTH 744
            ETIE L+ NN+  FDMAW+F GVFY DCRH  SSRSDYFKCLF + MRKG E+F+GV A  VS P+SKRHIFDMMRVFC+TG+VQVDKGEPILKTMERYSAFHYY L+GGMDVIRQLVMDVINP+NAIQALE+AM+S VCSG+ DG S+ GLLSDI DYI+IYA VVFKHKSFYAL  +SI G+SQICARDDLNI+EIDLLQCV+KLCEK+I A+K+  GL SAW L+ H
Sbjct:  416 ETIETLKCNNSDSFDMAWMFQGVFYNDCRH--SSRSDYFKCLFLNDMRKGTEKFEGVKANKVSDPISKRHIFDMMRVFCYTGIVQVDKGEPILKTMERYSAFHYYSLRGGMDVIRQLVMDVINPSNAIQALEYAMNSVVCSGE-DG-SDRGLLSDISDYIAIYALVVFKHKSFYALGFESIPGISQICARDDLNIREIDLLQCVFKLCEKRIHADKDGHGLRSAWELILH 641          
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: B5LWK4_9PHYC (Putative transcription regulator n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK4_9PHYC)

HSP 1 Score: 303 bits (777), Expect = 6.100e-95
Identity = 184/484 (38.02%), Postives = 276/484 (57.02%), Query Frame = 1
Query:   10 SISQNLLGYVSRWQLETIEALQANNAVFFDMAW-LFDGVFY-RDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTH-DAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATADTPPSNANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKTNKSDCSVKNITVTASVVNFRHDRWRKKKVSASLSSGTAFEIPTILSSNTIGNNDTHGYLFDIERYPEYSPKGTWILMSLCIE 1452
            S  Q L   V  WQ   I  L+ +   + DM W L DG  Y RDCR  Y+  S + + LF +T+ KG +  D V  Y +S    K HIF M+RVFCHTG+V+  K + IL+T+ERY+AF +YG++ G   +++LV+D + P+N++ A E+A+             + GLL DI  YI  YAF+VF+ KSF  +R +S++ +  +C  D LN+ EIDLL  + +LCEKK+  EKE     S +A++TH +    G SL+  +RLSS+SM EF+    ++    ++D  ++++  ++          P  +         SKKRK FQ +S YPRNL FH + SPQ ++SY    K+     F F  K+ ++LP ++F S  I  TV + D+ L +S        +S   ++   +TAS+VNFRHDRW+K   S +  SG+ F+IP ILS N I  +   GYLFD+  YP++S  G+ +++SL  E
Sbjct:    5 SDQQYLCEAVDGWQRNRIVELENDALQYTDMVWKLDDGETYLRDCRSAYTC-SSFMRTLFETTVGKGEKSRDEVPMYRLSE---KSHIFAMIRVFCHTGLVRFGKSDTILRTIERYAAFQFYGIEIGSATLKRLVLDSLGPSNSMVAFEYAVHR----------QDRGLLQDIVAYIRNYAFLVFRQKSFLGIRRESLAELVHLCDSDSLNVPEIDLLSHLIRLCEKKLD-EKEFTEFDSPFAILTHREWGTSGKSLFDALRLSSLSMEEFMSLALKHPGAMNNDQIVQVMRAIHR---------PEGS---------SKKRKKFQIVSAYPRNLTFHPVESPQMEVSYCQRDKVLAHYVFQFLPKKDVSLPTLNFGSYQIRITVVYRDKVLGISGQAISPKQESRADLR---ITASMVNFRHDRWKK---STTALSGSVFQIPNILSCNAIEGSS--GYLFDVAEYPDFSDGGSCLMLSLACE 447          
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: Q6XM46_9PHYC (FirrV-1-A41 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM46_9PHYC)

HSP 1 Score: 260 bits (665), Expect = 8.640e-78
Identity = 164/500 (32.80%), Postives = 262/500 (52.40%), Query Frame = 1
Query:   25 LLGYVSRWQLETIEALQANNAVFFDMAWLFDGV--FYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTHDAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATADTPPSNANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLA-SPQTDISYWDDSKIKLFVAFDFS---SKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKT----NKSDCSVK------NITVTASVVNFRHDRWRKKKVSASLSSGTA----FEIPTILSSNTIGNN--DTHGYLFDIERYPEYSPK-GTWILMSLCIEK 1455
            L G V  WQ   I  L  N   + DMAW  +G     RDCR  Y   S +    F +++       DG+  Y++S    K  IF M+R+FCHTG++  DK + IL TMERY+AF +YG++ G   +++ V++ + P+N++ A E+A+             +  LL++I+ Y+S YAF+VF+ KSF  +  +S   +  +C  D+LN+KEIDL  C+++LCEKK ++EK      SA+++MTH  ++   SL+  +RL SI+M E + F+ ++    ++D  ++I+  ++   D                     KRK FQ +S YPR L F+ +  +PQ D+S+    K+     F F+   +K  + LPP+ F +  +H  + + DR++ ++  IH       N S            I V   ++NFRH+RW+K  V   +S+       F IP ILS N I  +     GYLFD+  YPEYS +    +L+S+  E+
Sbjct:    7 LCGAVEEWQQHRIRDLLDNTLQYPDMAWKLNGEDDSIRDCRVFYEC-STFLTNYFQTSVGTAKTNADGLPLYTLSE---KPAIFSMIRIFCHTGLMCFDKTDSILTTMERYAAFQFYGIEMGSATLKRHVLESLTPSNSVLAFEYAVHR----------HDDSLLAEIKAYMSHYAFIVFRQKSFLGIGKESFHQLVSLCDSDNLNMKEIDLFSCLFRLCEKK-NSEKGFAEFDSAFSIMTHTRSQGEKSLYDTLRLHSITMEEVMSFVHKHPAALNNDQIVQIMREIHQPGDRP-------------------KRKKFQAVSSYPRYLNFNAVVGNPQVDVSHRQTGKMMAHFVFPFTPGRTKSDVALPPIAFGAYQVHANMVYTDRTIGITGQIHATEGTGINSSSXXXXXXXXNTKIRVVCYIINFRHERWKKSSVCLDVSNTLYQYLDFRIPNILSCNAIERSCGTPTGYLFDVTCYPEYSEQDAASLLLSMECEE 472          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNM4_ESV1K0.000e+093.24EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K[more]
A0A6H5KJD3_9PHAE5.530e-11076.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWK4_9PHYC6.100e-9538.02Putative transcription regulator n=1 Tax=Feldmanni... [more]
Q6XM46_9PHYC8.640e-7832.80FirrV-1-A41 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6035contigEcto-sp13_S_contig6035:3856..5313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1458
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-40 BTB/POZ-like domain
Ec32 orthologEc-06_006390.1
Cds size1458
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.6302602-CDS-Ecto-sp13_S_contig6035:3855..53131681463840.6302602-CDS-Ecto-sp13_S_contig6035:3855..5313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 3856..5313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6035.16660.1prot_Ecto-sp13_S_contig6035.16660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6035 3856..5313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6035.16660.1

>prot_Ecto-sp13_S_contig6035.16660.1 ID=prot_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=486bp
MEKSISQNLLGYVSRWQLETIEALQANNAVFFDMAWLFDGVFYRDCRHLY
SSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTG
MVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALE
FAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSIS
GVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTHDA
AEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADA
TADTPPSNANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYW
DDSKIKLFVAFDFSSKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHG
KTNKSDCSVKNITVTASVVNFRHDRWRKKKVSASLSSGTAFEIPTILSSN
TIGNNDTHGYLFDIERYPEYSPKGTWILMSLCIEK*
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mRNA from alignment at Ecto-sp13_S_contig6035:3856..5313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6035.16660.1 ID=mRNA_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3856..5313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAATCTATCTCGCAAAACCTTCTCGGGTACGTATCGCGATGGCA GTTGGAAACGATCGAAGCTCTACAGGCCAACAACGCCGTTTTTTTTGACA TGGCATGGTTGTTCGACGGCGTCTTCTACAGAGACTGCAGACACCTTTAC TCCTCGCGGTCCGATTACTTCAAGTGTCTCTTTTCCAGTACCATGAGAAA AGGCAACGAAGAGTTTGACGGTGTCACAGCCTACAGCGTTTCTCACCCCA TGTCCAAGAGACACATCTTCGACATGATGAGAGTGTTTTGTCACACAGGT ATGGTGCAGGTGGACAAGGGGGAACCAATCCTAAAAACCATGGAGCGGTA TTCCGCGTTCCACTACTACGGGCTGCAGGGAGGAATGGATGTTATTCGAC AGCTCGTGATGGACGTGATCAATCCCACAAACGCAATACAAGCGCTCGAA TTCGCCATGAGTTCGGCCGTGTGCTCCGGAGACGGTGACGGCGACAGCAA CGCGGGGCTCTTGTCTGATATCCAGGACTACATTTCAATCTACGCCTTTG TCGTCTTCAAGCACAAGAGCTTTTACGCGCTTCGGGCCGATAGCATTTCG GGAGTGTCGCAGATATGCGCGAGGGACGATCTTAATATCAAGGAGATCGA TCTGCTCCAGTGCGTCTACAAGCTTTGCGAAAAGAAAATCTCTGCGGAAA AGGAGCTGGGGGGCTTGGGGTCAGCGTGGGCGCTCATGACGCACGATGCT GCCGAGCCGGGGTCGTCTCTGTGGAGCCAAATACGCCTGTCCAGCATCTC GATGAGAGAGTTTGTCAAGTTCATCAAGGAAAACAAACAGTGCTTCTCAA GTGACAACGCGCTAAAGATCATCACGTTTCTTTACTCGTGTGCCGACGCC ACCGCCGACACACCGCCGAGCAATGCGAACGACGAAGTCGTTGGTGTTCA TCTGTCCAAGAAGCGGAAGACGTTCCAGCCAATAAGTTTCTACCCGAGAA ACCTTGAGTTCCATGGGCTCGCGTCGCCACAGACAGACATCTCGTACTGG GACGACTCCAAGATCAAGCTCTTCGTTGCGTTCGATTTCTCCTCCAAAGA AGCGATGACTCTGCCCCCCGTGCACTTCCACAGTGCTTTCATTCATTGTA CCGTGTACCACGCCGATAGATCGCTCAACGTCAGTGCCAACATTCACGGC AAGACAAACAAGAGCGATTGTTCGGTAAAAAACATCACGGTGACGGCATC CGTTGTCAACTTCAGGCACGATCGATGGAGGAAGAAAAAAGTCTCGGCAT CGCTATCAAGCGGCACGGCCTTCGAAATTCCCACGATTCTATCGTCGAAC ACCATTGGCAACAACGACACGCATGGCTACCTTTTCGATATCGAAAGATA CCCGGAGTATTCGCCGAAGGGAACGTGGATTTTGATGTCCTTGTGTATTG AAAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6035:3856..5313-

>mRNA_Ecto-sp13_S_contig6035.16660.1 ID=mRNA_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3856..5313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAATCTATCTCGCAAAACCTTCTCGGGTACGTATCGCGATGGCA
GTTGGAAACGATCGAAGCTCTACAGGCCAACAACGCCGTTTTTTTTGACA
TGGCATGGTTGTTCGACGGCGTCTTCTACAGAGACTGCAGACACCTTTAC
TCCTCGCGGTCCGATTACTTCAAGTGTCTCTTTTCCAGTACCATGAGAAA
AGGCAACGAAGAGTTTGACGGTGTCACAGCCTACAGCGTTTCTCACCCCA
TGTCCAAGAGACACATCTTCGACATGATGAGAGTGTTTTGTCACACAGGT
ATGGTGCAGGTGGACAAGGGGGAACCAATCCTAAAAACCATGGAGCGGTA
TTCCGCGTTCCACTACTACGGGCTGCAGGGAGGAATGGATGTTATTCGAC
AGCTCGTGATGGACGTGATCAATCCCACAAACGCAATACAAGCGCTCGAA
TTCGCCATGAGTTCGGCCGTGTGCTCCGGAGACGGTGACGGCGACAGCAA
CGCGGGGCTCTTGTCTGATATCCAGGACTACATTTCAATCTACGCCTTTG
TCGTCTTCAAGCACAAGAGCTTTTACGCGCTTCGGGCCGATAGCATTTCG
GGAGTGTCGCAGATATGCGCGAGGGACGATCTTAATATCAAGGAGATCGA
TCTGCTCCAGTGCGTCTACAAGCTTTGCGAAAAGAAAATCTCTGCGGAAA
AGGAGCTGGGGGGCTTGGGGTCAGCGTGGGCGCTCATGACGCACGATGCT
GCCGAGCCGGGGTCGTCTCTGTGGAGCCAAATACGCCTGTCCAGCATCTC
GATGAGAGAGTTTGTCAAGTTCATCAAGGAAAACAAACAGTGCTTCTCAA
GTGACAACGCGCTAAAGATCATCACGTTTCTTTACTCGTGTGCCGACGCC
ACCGCCGACACACCGCCGAGCAATGCGAACGACGAAGTCGTTGGTGTTCA
TCTGTCCAAGAAGCGGAAGACGTTCCAGCCAATAAGTTTCTACCCGAGAA
ACCTTGAGTTCCATGGGCTCGCGTCGCCACAGACAGACATCTCGTACTGG
GACGACTCCAAGATCAAGCTCTTCGTTGCGTTCGATTTCTCCTCCAAAGA
AGCGATGACTCTGCCCCCCGTGCACTTCCACAGTGCTTTCATTCATTGTA
CCGTGTACCACGCCGATAGATCGCTCAACGTCAGTGCCAACATTCACGGC
AAGACAAACAAGAGCGATTGTTCGGTAAAAAACATCACGGTGACGGCATC
CGTTGTCAACTTCAGGCACGATCGATGGAGGAAGAAAAAAGTCTCGGCAT
CGCTATCAAGCGGCACGGCCTTCGAAATTCCCACGATTCTATCGTCGAAC
ACCATTGGCAACAACGACACGCATGGCTACCTTTTCGATATCGAAAGATA
CCCGGAGTATTCGCCGAAGGGAACGTGGATTTTGATGTCCTTGTGTATTG
AAAAGTAA
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