mRNA_Ecto-sp13_S_contig6035.16660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: Q8QNM4_ESV1K (EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K) HSP 1 Score: 907 bits (2345), Expect = 0.000e+0 Identity = 455/488 (93.24%), Postives = 467/488 (95.70%), Query Frame = 1
Query: 1 MEKSISQNLLGYVSRWQLETIEALQANNAVFFDMAWLFDGVFYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTHDAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATA-DTPPSNA--NDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKTNKSDCSVKNITVTASVVNFRHDRWRKKKVSASLSSGTAFEIPTILSSNTIGNNDTHGYLFDIERYPEYSPKGTWILMSLCIEK 1455
MEK ISQNLLGYVSRWQLETIEALQANNA FFDMAWLFDGV+YRDC+ LYSSRSDYFKCLFSS+MRKG EEF+GVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYY LQGGM+VIRQLVMDVINPTNAIQALE+AMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSI GVSQICARDDLNIKEIDLLQCVYKLCEKK+SA+ + GGLGSAWALMT DAAE GSSLWS+IRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADA A DTPPS+A NDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHS FIHCTVYHADRSLNVS NIHGKTNKSD SV NITVTASVVNFRHDRWRKK V ASLSSGTAF+IPTILSSNTI NNDTHGYLFDIERYPEYSPKGTWILMSLCIEK
Sbjct: 1 MEKYISQNLLGYVSRWQLETIEALQANNADFFDMAWLFDGVYYRDCKQLYSSRSDYFKCLFSSSMRKGTEEFEGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYSLQGGMNVIRQLVMDVINPTNAIQALEYAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSIPGVSQICARDDLNIKEIDLLQCVYKLCEKKVSADNKPGGLGSAWALMTDDAAERGSSLWSKIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADAAAADTPPSSASANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSVFIHCTVYHADRSLNVSGNIHGKTNKSDPSV-NITVTASVVNFRHDRWRKKNVLASLSSGTAFKIPTILSSNTIANNDTHGYLFDIERYPEYSPKGTWILMSLCIEK 487
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE) HSP 1 Score: 349 bits (895), Expect = 5.530e-110 Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 1
Query: 55 ETIEALQANNAVFFDMAWLFDGVFYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTH 744
ETIE L+ NN+ FDMAW+F GVFY DCRH SSRSDYFKCLF + MRKG E+F+GV A VS P+SKRHIFDMMRVFC+TG+VQVDKGEPILKTMERYSAFHYY L+GGMDVIRQLVMDVINP+NAIQALE+AM+S VCSG+ DG S+ GLLSDI DYI+IYA VVFKHKSFYAL +SI G+SQICARDDLNI+EIDLLQCV+KLCEK+I A+K+ GL SAW L+ H
Sbjct: 416 ETIETLKCNNSDSFDMAWMFQGVFYNDCRH--SSRSDYFKCLFLNDMRKGTEKFEGVKANKVSDPISKRHIFDMMRVFCYTGIVQVDKGEPILKTMERYSAFHYYSLRGGMDVIRQLVMDVINPSNAIQALEYAMNSVVCSGE-DG-SDRGLLSDISDYIAIYALVVFKHKSFYALGFESIPGISQICARDDLNIREIDLLQCVFKLCEKRIHADKDGHGLRSAWELILH 641
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: B5LWK4_9PHYC (Putative transcription regulator n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK4_9PHYC) HSP 1 Score: 303 bits (777), Expect = 6.100e-95 Identity = 184/484 (38.02%), Postives = 276/484 (57.02%), Query Frame = 1
Query: 10 SISQNLLGYVSRWQLETIEALQANNAVFFDMAW-LFDGVFY-RDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTH-DAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATADTPPSNANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKTNKSDCSVKNITVTASVVNFRHDRWRKKKVSASLSSGTAFEIPTILSSNTIGNNDTHGYLFDIERYPEYSPKGTWILMSLCIE 1452
S Q L V WQ I L+ + + DM W L DG Y RDCR Y+ S + + LF +T+ KG + D V Y +S K HIF M+RVFCHTG+V+ K + IL+T+ERY+AF +YG++ G +++LV+D + P+N++ A E+A+ + GLL DI YI YAF+VF+ KSF +R +S++ + +C D LN+ EIDLL + +LCEKK+ EKE S +A++TH + G SL+ +RLSS+SM EF+ ++ ++D ++++ ++ P + SKKRK FQ +S YPRNL FH + SPQ ++SY K+ F F K+ ++LP ++F S I TV + D+ L +S +S ++ +TAS+VNFRHDRW+K S + SG+ F+IP ILS N I + GYLFD+ YP++S G+ +++SL E
Sbjct: 5 SDQQYLCEAVDGWQRNRIVELENDALQYTDMVWKLDDGETYLRDCRSAYTC-SSFMRTLFETTVGKGEKSRDEVPMYRLSE---KSHIFAMIRVFCHTGLVRFGKSDTILRTIERYAAFQFYGIEIGSATLKRLVLDSLGPSNSMVAFEYAVHR----------QDRGLLQDIVAYIRNYAFLVFRQKSFLGIRRESLAELVHLCDSDSLNVPEIDLLSHLIRLCEKKLD-EKEFTEFDSPFAILTHREWGTSGKSLFDALRLSSLSMEEFMSLALKHPGAMNNDQIVQVMRAIHR---------PEGS---------SKKRKKFQIVSAYPRNLTFHPVESPQMEVSYCQRDKVLAHYVFQFLPKKDVSLPTLNFGSYQIRITVVYRDKVLGISGQAISPKQESRADLR---ITASMVNFRHDRWKK---STTALSGSVFQIPNILSCNAIEGSS--GYLFDVAEYPDFSDGGSCLMLSLACE 447
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Match: Q6XM46_9PHYC (FirrV-1-A41 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM46_9PHYC) HSP 1 Score: 260 bits (665), Expect = 8.640e-78 Identity = 164/500 (32.80%), Postives = 262/500 (52.40%), Query Frame = 1
Query: 25 LLGYVSRWQLETIEALQANNAVFFDMAWLFDGV--FYRDCRHLYSSRSDYFKCLFSSTMRKGNEEFDGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYGLQGGMDVIRQLVMDVINPTNAIQALEFAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSISGVSQICARDDLNIKEIDLLQCVYKLCEKKISAEKELGGLGSAWALMTHDAAEPGSSLWSQIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADATADTPPSNANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLA-SPQTDISYWDDSKIKLFVAFDFS---SKEAMTLPPVHFHSAFIHCTVYHADRSLNVSANIHGKT----NKSDCSVK------NITVTASVVNFRHDRWRKKKVSASLSSGTA----FEIPTILSSNTIGNN--DTHGYLFDIERYPEYSPK-GTWILMSLCIEK 1455
L G V WQ I L N + DMAW +G RDCR Y S + F +++ DG+ Y++S K IF M+R+FCHTG++ DK + IL TMERY+AF +YG++ G +++ V++ + P+N++ A E+A+ + LL++I+ Y+S YAF+VF+ KSF + +S + +C D+LN+KEIDL C+++LCEKK ++EK SA+++MTH ++ SL+ +RL SI+M E + F+ ++ ++D ++I+ ++ D KRK FQ +S YPR L F+ + +PQ D+S+ K+ F F+ +K + LPP+ F + +H + + DR++ ++ IH N S I V ++NFRH+RW+K V +S+ F IP ILS N I + GYLFD+ YPEYS + +L+S+ E+
Sbjct: 7 LCGAVEEWQQHRIRDLLDNTLQYPDMAWKLNGEDDSIRDCRVFYEC-STFLTNYFQTSVGTAKTNADGLPLYTLSE---KPAIFSMIRIFCHTGLMCFDKTDSILTTMERYAAFQFYGIEMGSATLKRHVLESLTPSNSVLAFEYAVHR----------HDDSLLAEIKAYMSHYAFIVFRQKSFLGIGKESFHQLVSLCDSDNLNMKEIDLFSCLFRLCEKK-NSEKGFAEFDSAFSIMTHTRSQGEKSLYDTLRLHSITMEEVMSFVHKHPAALNNDQIVQIMREIHQPGDRP-------------------KRKKFQAVSSYPRYLNFNAVVGNPQVDVSHRQTGKMMAHFVFPFTPGRTKSDVALPPIAFGAYQVHANMVYTDRTIGITGQIHATEGTGINSSSXXXXXXXXNTKIRVVCYIINFRHERWKKSSVCLDVSNTLYQYLDFRIPNILSCNAIERSCGTPTGYLFDVTCYPEYSEQDAASLLLSMECEE 472 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6035.16660.1 >prot_Ecto-sp13_S_contig6035.16660.1 ID=prot_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=486bp MEKSISQNLLGYVSRWQLETIEALQANNAVFFDMAWLFDGVFYRDCRHLYback to top mRNA from alignment at Ecto-sp13_S_contig6035:3856..5313- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6035.16660.1 ID=mRNA_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3856..5313- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6035:3856..5313- >mRNA_Ecto-sp13_S_contig6035.16660.1 ID=mRNA_Ecto-sp13_S_contig6035.16660.1|Name=mRNA_Ecto-sp13_S_contig6035.16660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3856..5313- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |