mRNA_Ecto-sp13_S_contig60264.16646.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60264.16646.1
Unique NamemRNA_Ecto-sp13_S_contig60264.16646.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: D7G7L8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L8_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 3.560e-102
Identity = 163/211 (77.25%), Postives = 176/211 (83.41%), Query Frame = 1
Query:    1 MLRVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPDTT--SRACVSGIRSVSRMTIPSVPAMTVDGKMVVEDLTGAGQKRIRV-GYETSSTDGEGAQTCRQETPRLYFNQTHIFRGE 624
            MLRVLLNAGADVNSRS AGSTPL+WACR N ADIVECLLLAGADPD LDN GADAGSV GLGDPPR  G QSPPILPGAVN+TG LKN+ LATRI+LALS+ARKDRTWRRRGWLVVLA RQAMAM +VP+TT  S+    GIR VSRMT+P VPAM VD KMVVEDLTGAGQKRIRV G ETSS DG GA+T R+    L+  QTHI RG+
Sbjct:    1 MLRVLLNAGADVNSRSSAGSTPLYWACRLNTADIVECLLLAGADPDYLDNQGADAGSVTGLGDPPRHTGRQSPPILPGAVNETGRLKNEALATRIRLALSKARKDRTWRRRGWLVVLATRQAMAMNMVPNTTRASKTHARGIRRVSRMTMPRVPAMIVDEKMVVEDLTGAGQKRIRVVGNETSSADGGGAETSRKTKSGLHCRQTHIVRGK 211          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 6.460e-97
Identity = 174/262 (66.41%), Postives = 185/262 (70.61%), Query Frame = 1
Query:    1 MLRVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPDTTSRAC---VSGIRSVSRMTIPSVPAMT-VDGKMVVEDLTGAGQKRIRVGYETSSTDGEGAQTCRQETPRLYFNQTHIFRGEAASSFHKIYNGAGTNFTSLLPVQSSAQLGSTGGDSTR-VGSGTGWTPERG 771
            MLR+LL+ GADVNSRSP                            DSLDN GADAGSV GLGDPP   G QSPPILPGA NQTG  KN  LATRIQLALS+ARKDRTWRRRGWLVVLARRQAM MAVVP TTSRA    V G +   RMTIP +P MT VDGKMVVEDLTGA QKR RV  ET S DG GA+TCR+E P L+  QT I RGE ASSFH+ ++G GTNFTSLL   SSAQLGSTGGD T  VGSGTGW PERG
Sbjct:  377 MLRILLSMGADVNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSVTGLGDPPGHTGPQSPPILPGAANQTGRPKNGALATRIQLALSKARKDRTWRRRGWLVVLARRQAMTMAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQKRTRVANETFSADGGGAETCRKENPDLHCKQTSIVRGEGASSFHRFFDGTGTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERG 638          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.220e-55
Identity = 135/262 (51.53%), Postives = 154/262 (58.78%), Query Frame = 1
Query:    1 MLRVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPDTTSRAC---VSGIRSVSRMTIPSVPAMT-VDGKMVVEDLTGAGQKRIRVGYETSSTDGEGAQTCRQETPRLYFNQTHIFRGEAASSFHKIYNGAGTNFTSLLPVQSSAQLGSTGGDST-RVGSGTGWTPERG 771
            MLR+LL+ GADVNSRSPA                           DSLDN GADAGS  GLGDPPR  G QSPPILPGAVN+TGWLKN+TLATRIQLALS ARKDRTWRRRGWLVVLARRQAMAMAVVP TTSRA    VSG +S S+MTIP + A T VD          + Q+  R G   SS+D   +     + P  +   +H   G +     K  +     FTS +   SS QLG  GG S   +   TGWTP +G
Sbjct:  353 MLRILLSMGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSAIGLGDPPRHKGPQSPPILPGAVNRTGWLKNETLATRIQLALSNARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKTSVSGNKSDSKMTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPHSN----DVPGGW---SHGNLGNSVPLQSKGSHNTAI-FTSQISESSSMQLGWAGGGSAGHIDKVTGWTPGQG 606          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.410e-45
Identity = 110/208 (52.88%), Postives = 121/208 (58.17%), Query Frame = 1
Query:    1 MLRVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPDTTSRACVS-------GIRSVSRMTIPSVPAMT-VDGKMVVEDLTGAGQKRIRVGYETSSTD---GEGAQTCRQETPRL 591
            MLRVLL+ GADVNSRSPA                           DS DN GADAGS  GLGDPPR AG QSPPIL GAVN+ G L N+ LATRI+LALS+ARKDRTWRRRGWLVVLARRQAMAMAVVP TTSRA  +         +S SRMT P + A T VD            Q+  R G  +SS+D   G         T RL
Sbjct:  379 MLRVLLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSADNEGADAGSAIGLGDPPRHAGPQSPPILLGAVNEIGRLNNEELATRIRLALSKARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKAYYAFVRGNKKSESRMTTPRILATTGVDADTGRRVYLAIHQEGTRQGNGSSSSDLPHGNEVDKSNDATARL 586          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A6H5JZY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.360e-8
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 1
Query:    7 RVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVV 348
            R +L  GA+VN+R+    TPLH AC +++  +VE LLL GAD     ++      + G+             +L G+ +Q     ++    RI+  L+RA  DR+WRRRGWLV+
Sbjct:  185 RAVLERGANVNARNDNDLTPLHVACSWSSLAVVELLLLWGADEKLTGDNRVSPADIIGVS------------LLDGSNSQEIQADHQ----RIRQMLARAPADRSWRRRGWLVL 282          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.610e-7
Identity = 44/134 (32.84%), Postives = 61/134 (45.52%), Query Frame = 1
Query:   13 LLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGW-LKNKTLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVV--PDTTSRA 405
            LL  GADV+ R   G+T LH AC     + V+ LL  GAD   +D+ G    S                   P   ++  W  +N+    R+   L+ A +DR+WRRRG+LV+    Q     VV  PDT + A
Sbjct:    4 LLQLGADVHVRDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYH----------------FPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRTHQDRLRLVVDVPDTAATA 121          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A0M9WH94_9EURO (NACHT domain-containing protein n=1 Tax=Penicillium nordicum TaxID=229535 RepID=A0A0M9WH94_9EURO)

HSP 1 Score: 62.0 bits (149), Expect = 3.030e-7
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   13 LLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGA 159
            LL AGA+V+ RSPAG T LH+AC ++ AD+V+ LL AGADP + D+ GA
Sbjct:  783 LLQAGANVHVRSPAGVTALHYACDYHQADVVKMLLEAGADPTAEDDSGA 831          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.470e-7
Identity = 43/118 (36.44%), Postives = 53/118 (44.92%), Query Frame = 1
Query:   13 LLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAG------LGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVV 348
            LL  GA++N+R+    TPLH AC      +VE LL  GAD    +N G     V G      L D  R A +Q                      RI   L+RA  DR+WRRRGWLV+
Sbjct:  340 LLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQ----------------------RIHRMLARAPADRSWRRRGWLVL 435          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.320e-6
Identity = 42/112 (37.50%), Postives = 53/112 (47.32%), Query Frame = 1
Query:   13 LLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALSRARKDRTWRRRGWLVV 348
            LL  GA+ N+      TPLH AC  +N   VE LL  GAD    +++G     V G+ D              G VN       K    RI+  L+RA  DR+WRRRGWLV+
Sbjct:  337 LLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDR-------------GDVNDEDV---KADHKRIRRMLARAPADRSWRRRGWLVL 432          
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Match: A0A663E6Y9_AQUCH (Ankyrin repeat domain-containing protein 40-like n=2 Tax=Accipitrinae TaxID=8955 RepID=A0A663E6Y9_AQUCH)

HSP 1 Score: 57.8 bits (138), Expect = 4.720e-6
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    4 LRVLLNAGADVNSRSPA-GSTPLHWACRFNNADIVECLLLAGADPDSLDNHGADAGSVAGLGDPPRRAGHQSP 219
            +R LL AGAD+NSR+   G T LHWAC+ N+A +V CLL AGAD   L   G  A  +    D  +  G + P
Sbjct:   26 VRRLLGAGADINSRNEINGWTCLHWACKRNHAQVVSCLLGAGADKQILTAKGELAAQLTSKPDIRKILGEEEP 98          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60264.16646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7L8_ECTSI3.560e-10277.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L664_9PHAE6.460e-9766.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T2_9PHAE1.220e-5551.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7M3_ECTSI4.410e-4552.88Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JZY3_9PHAE3.360e-835.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7V4_9PHAE2.610e-732.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0M9WH94_9EURO3.030e-759.18NACHT domain-containing protein n=1 Tax=Penicilliu... [more]
D8LQN0_ECTSI5.470e-736.44Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LB27_ECTSI1.320e-637.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A663E6Y9_AQUCH4.720e-645.21Ankyrin repeat domain-containing protein 40-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60264contigEcto-sp13_S_contig60264:20..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.1
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
Model size772
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-22_001890.1
Cds size771
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.380315-CDS-Ecto-sp13_S_contig60264:19..7901681463839.380315-CDS-Ecto-sp13_S_contig60264:19..790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60264 20..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60264.16646.1prot_Ecto-sp13_S_contig60264.16646.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60264 20..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60264.16646.1

>prot_Ecto-sp13_S_contig60264.16646.1 ID=prot_Ecto-sp13_S_contig60264.16646.1|Name=mRNA_Ecto-sp13_S_contig60264.16646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MLRVLLNAGADVNSRSPAGSTPLHWACRFNNADIVECLLLAGADPDSLDN
HGADAGSVAGLGDPPRRAGHQSPPILPGAVNQTGWLKNKTLATRIQLALS
RARKDRTWRRRGWLVVLARRQAMAMAVVPDTTSRACVSGIRSVSRMTIPS
VPAMTVDGKMVVEDLTGAGQKRIRVGYETSSTDGEGAQTCRQETPRLYFN
QTHIFRGEAASSFHKIYNGAGTNFTSLLPVQSSAQLGSTGGDSTRVGSGT
GWTPERG
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mRNA from alignment at Ecto-sp13_S_contig60264:20..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60264.16646.1 ID=mRNA_Ecto-sp13_S_contig60264.16646.1|Name=mRNA_Ecto-sp13_S_contig60264.16646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60264:20..790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACGCGTCCTGCTAAACGCGGGAGCCGACGTTAACTCTAGGTCCCC CGCGGGCTCGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACA TCGTCGAGTGCTTGCTGTTAGCGGGAGCCGATCCCGACTCTTTGGATAAC CACGGCGCCGACGCGGGCTCCGTGGCTGGCCTTGGCGACCCCCCCCGCCG CGCGGGACACCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATCAAACCG GCTGGCTAAAGAATAAAACGTTGGCGACCCGCATTCAGCTGGCTCTGTCG AGAGCGAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTGCT GGCTAGGAGGCAGGCGATGGCGATGGCCGTTGTGCCCGACACTACTTCCA GAGCTTGCGTGAGTGGTATAAGGAGCGTTTCTAGGATGACCATACCAAGT GTTCCGGCGATGACAGTGGACGGAAAGATGGTCGTTGAGGATCTCACTGG TGCCGGCCAGAAACGGATCCGGGTGGGCTACGAAACCTCCAGCACCGACG GCGAAGGAGCCCAAACTTGCCGTCAAGAAACCCCCCGCCTGTACTTCAAT CAAACACACATCTTCCGTGGGGAGGCGGCGTCTTCCTTCCACAAGATCTA CAACGGCGCTGGCACCAATTTCACCTCACTGCTGCCCGTGCAATCTTCGG CCCAGCTCGGTTCGACTGGTGGCGATAGCACCCGCGTCGGCAGTGGCACT GGCTGGACGCCTGAACGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60264:20..790+

>mRNA_Ecto-sp13_S_contig60264.16646.1 ID=mRNA_Ecto-sp13_S_contig60264.16646.1|Name=mRNA_Ecto-sp13_S_contig60264.16646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60264:20..790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACGCGTCCTGCTAAACGCGGGAGCCGACGTTAACTCTAGGTCCCC
CGCGGGCTCGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACA
TCGTCGAGTGCTTGCTGTTAGCGGGAGCCGATCCCGACTCTTTGGATAAC
CACGGCGCCGACGCGGGCTCCGTGGCTGGCCTTGGCGACCCCCCCCGCCG
CGCGGGACACCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATCAAACCG
GCTGGCTAAAGAATAAAACGTTGGCGACCCGCATTCAGCTGGCTCTGTCG
AGAGCGAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTGCT
GGCTAGGAGGCAGGCGATGGCGATGGCCGTTGTGCCCGACACTACTTCCA
GAGCTTGCGTGAGTGGTATAAGGAGCGTTTCTAGGATGACCATACCAAGT
GTTCCGGCGATGACAGTGGACGGAAAGATGGTCGTTGAGGATCTCACTGG
TGCCGGCCAGAAACGGATCCGGGTGGGCTACGAAACCTCCAGCACCGACG
GCGAAGGAGCCCAAACTTGCCGTCAAGAAACCCCCCGCCTGTACTTCAAT
CAAACACACATCTTCCGTGGGGAGGCGGCGTCTTCCTTCCACAAGATCTA
CAACGGCGCTGGCACCAATTTCACCTCACTGCTGCCCGTGCAATCTTCGG
CCCAGCTCGGTTCGACTGGTGGCGATAGCACCCGCGTCGGCAGTGGCACT
GGCTGGACGCCTGAACGGGGG
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