mRNA_Ecto-sp13_S_contig6024.16640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6024.16640.1
Unique NamemRNA_Ecto-sp13_S_contig6024.16640.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: D7FVV1_ECTSI (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV1_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 2.010e-96
Identity = 153/172 (88.95%), Postives = 157/172 (91.28%), Query Frame = 1
Query:    1 MSSCITLPLQLVLVSILVSICALRVEAFLPSTLTSGSLSFDRVHNGGCRSSRHTISKAGVSMAISSAKTSSATDKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQV 516
            MSSC TLPL LVLVSI    CALRV+A LPSTLTSGSL F RVH+GGC SSR TISKAG   A+SSAKTSSA DKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNIC+TLRDIPCIGDGDTGYGNSVNVKRTVKGYAQV
Sbjct:    1 MSSCNTLPLLLVLVSI----CALRVKALLPSTLTSGSLPFGRVHHGGCSSSRRTISKAGAGTAMSSAKTSSAADKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICATLRDIPCIGDGDTGYGNSVNVKRTVKGYAQV 168          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A1V9ZZC3_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZC3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.010e-43
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 1
Query:  220 DKLRDLLSRPE-ILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            +++R LLSRP+  + +PCCYDGLTARL+E AGF  TFMTGFGVS  HG PDTQL+SY EM+ASA  ICS+L+ IPCIGDGDTGYGN+VNVKRTVKGY Q
Sbjct:    6 NQIRQLLSRPDRSVVLPCCYDGLTARLIERAGFECTFMTGFGVSAVHGFPDTQLISYEEMVASARRICSSLQSIPCIGDGDTGYGNAVNVKRTVKGYIQ 104          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A1V9YZS8_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZS8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.470e-43
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  223 KLRDLLSRP-EILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            +LR LLSRP + + +PCCYDGLTARLVE AGF  TFMTGFGVS  HG PDTQL+SY EM ASA  IC  LRDIPCIGDGDTGYGN+VNVKRTV+GY Q
Sbjct:    7 ELRRLLSRPNQSVVLPCCYDGLTARLVERAGFECTFMTGFGVSAVHGFPDTQLVSYEEMAASARRICGALRDIPCIGDGDTGYGNAVNVKRTVRGYIQ 104          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: W7TTL0_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTL0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.240e-43
Identity = 80/117 (68.38%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  163 ISKAGVSMAISSAKTSSATDKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            +S +  +++  +A TS AT KLR+LL + +IL MPCCYDGLTARLVE  GFPLTFMTGFGVS A G PDTQLLSYAEM+ +A  I   L  IPCIGDGDTGYGN+VNVKRTV GYAQ
Sbjct:   39 LSHSRRTVSCMAASTSPAT-KLRNLLQQNDILIMPCCYDGLTARLVEQHGFPLTFMTGFGVSAARGHPDTQLLSYAEMVDNARQISEALHTIPCIGDGDTGYGNAVNVKRTVGGYAQ 154          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A835ZB25_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB25_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.540e-43
Identity = 83/145 (57.24%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   91 STLTSGSLSFDRVHNGGCRSSRHTISKAGVSMAISSAKTSSATDKLRDLLSRPE----ILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            S L++   SF  +    CR+          + + S A   S T KLR+LL+  E     L MPCCYDGLTARLVE  GFPLTFMTGFGVS +HG PDTQL+SYAEM   A  I + L  IPCIGDGDTGYGN+VNVKRTV+GYAQ
Sbjct:   11 SLLSNPCTSFSPLPGHSCRARNGASPTKTRAASASGAPRLSNTGKLRELLAEQERTGEALIMPCCYDGLTARLVEQGGFPLTFMTGFGVSASHGFPDTQLISYAEMQQRALEIIAALDSIPCIGDGDTGYGNAVNVKRTVRGYAQ 155          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A0G4I971_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I971_9ALVE)

HSP 1 Score: 150 bits (378), Expect = 2.080e-41
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 1
Query:  202 KTSSATDKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRD-IPCIGDGDTGYGNSVNVKRTVKGYAQV 516
            KT +   +LR LLS  + L MPCCYDG+TARLVED GFPLTFMTGFGVS + G PD QL+S+ EML+SAT I + LR   PCI DGDTGYGN+VNVKRTV+GYAQV
Sbjct:   12 KTVTPAGRLRALLSENKTLVMPCCYDGITARLVEDGGFPLTFMTGFGVSASRGFPDAQLVSFGEMLSSATTIVAALRKGTPCIADGDTGYGNAVNVKRTVRGYAQV 117          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A0G4G948_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G948_VITBC)

HSP 1 Score: 147 bits (371), Expect = 1.560e-40
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  214 ATDKLRDLLSRPEILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            + D+LR LL   +IL MPCCYD LTA+L+E+AGFPLTFM+GF VS A G PDTQL+SY EM+ +  +IC+TL+  P IGDGD GYGN VNVKRTVKGYAQ
Sbjct:    5 SADRLRRLLEGADILVMPCCYDALTAKLIEEAGFPLTFMSGFSVSAARGFPDTQLISYQEMVDTCASICATLKTTPLIGDGDNGYGNPVNVKRTVKGYAQ 104          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A7S2SD78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD78_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.720e-40
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1
Query:  223 KLRDLL-SRPE---ILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQV 516
            +LR+LL ++P+   +L MPCCYDGLTARLVE+AGFPLTFMTGFGVS  HG+PDTQLLSY EM A+A  I S+L+ IPCIGDGDTGYGN +NV+RTV GY QV
Sbjct:   62 RLRELLDAQPQSGSVLLMPCCYDGLTARLVENAGFPLTFMTGFGVSAVHGVPDTQLLSYGEMQAAARVITSSLQAIPCIGDGDTGYGNPMNVQRTVHGYHQV 163          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A067C6V3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6V3_SAPPC)

HSP 1 Score: 145 bits (366), Expect = 8.320e-40
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  223 KLRDLLSRPEI-LTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIGDGDTGYGNSVNVKRTVKGYAQ 513
            +LR LLSR +  + +PCCYDGL+ARLVE AGF  TFMTGFGVS  HG PDTQL+SY EM+ASA  IC++L  IPCIGD DTGYGN++NVKRTV+GY Q
Sbjct:    7 ELRRLLSREDTPVVLPCCYDGLSARLVERAGFECTFMTGFGVSAVHGFPDTQLISYEEMVASARRICASLTSIPCIGDADTGYGNAINVKRTVRGYIQ 104          
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Match: A0A7S1XX81_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX81_9STRA)

HSP 1 Score: 146 bits (368), Expect = 8.760e-40
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  190 ISSAKTSSATDKLRDLLSRP--EILTMPCCYDGLTARLVEDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRD--IPCIGDGDTGYGNSVNVKRTVKGYA 510
            +++A   S  ++LR LLS P  +IL+MPCCYDGLTA+LV  AGFPLTFMTGFGVS A G PDT L+SYAEM ASA +I + LR   IPCIGDGDTGYGN++NVKRTV+GYA
Sbjct:   15 LAAAAALSPANRLRGLLSDPNRKILSMPCCYDGLTAKLVARAGFPLTFMTGFGVSAARGFPDTGLVSYAEMEASARDITAALRPYGIPCIGDGDTGYGNAINVKRTVQGYA 125          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6024.16640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV1_ECTSI2.010e-9688.95Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A1V9ZZC3_9STRA1.010e-4372.73Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A1V9YZS8_9STRA1.470e-4375.51Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
W7TTL0_9STRA3.240e-4368.38Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A835ZB25_9STRA4.540e-4357.24Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A0G4I971_9ALVE2.080e-4168.87Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4G948_VITBC1.560e-4067.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2SD78_9STRA2.720e-4071.57Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067C6V3_SAPPC8.320e-4069.39Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A7S1XX81_9STRA8.760e-4067.57Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6024contigEcto-sp13_S_contig6024:25..877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score293.5
Seed ortholog evalue6.4e-77
Seed eggNOG ortholog2880.D7FVV1
Model size516
KEGG rclassRC00286,RC00287
KEGG koko:K03417
KEGG ReactionR00409
KEGG Pathwayko00640,map00640
Hectar predicted targeting categorychloroplast
Exons2
EggNOG free text desc.isocitrate lyase activity
EggNOG OGsCOG2513@1,KOG1260@2759
Ec32 ortholog descriptioncarboxyvinyl-carboxyphosphonate phosphorylmutase
Ec32 orthologEc-01_002250.1
EC4.1.3.30
Cds size516
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.819734-CDS-Ecto-sp13_S_contig6024:24..1651681463838.819734-CDS-Ecto-sp13_S_contig6024:24..165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6024 25..165 -
1681463838.8326821-CDS-Ecto-sp13_S_contig6024:502..8771681463838.8326821-CDS-Ecto-sp13_S_contig6024:502..877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6024 503..877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6024.16640.1prot_Ecto-sp13_S_contig6024.16640.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6024 25..877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6024.16640.1

>prot_Ecto-sp13_S_contig6024.16640.1 ID=prot_Ecto-sp13_S_contig6024.16640.1|Name=mRNA_Ecto-sp13_S_contig6024.16640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MSSCITLPLQLVLVSILVSICALRVEAFLPSTLTSGSLSFDRVHNGGCRS
SRHTISKAGVSMAISSAKTSSATDKLRDLLSRPEILTMPCCYDGLTARLV
EDAGFPLTFMTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRDIPCIG
DGDTGYGNSVNVKRTVKGYAQV
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mRNA from alignment at Ecto-sp13_S_contig6024:25..877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6024.16640.1 ID=mRNA_Ecto-sp13_S_contig6024.16640.1|Name=mRNA_Ecto-sp13_S_contig6024.16640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6024:25..877- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGTGCATTACCCTGCCGCTCCAGCTGGTGCTCGTCTCCATCCT AGTCTCCATCTGCGCACTCAGGGTGGAAGCGTTCTTGCCTTCCACCTTGA CGAGCGGTTCGCTGTCTTTTGACCGTGTGCACAATGGCGGCTGCCGCAGC AGCAGACACACTATTTCCAAGGCAGGCGTTAGCATGGCCATATCCTCGGC GAAGACCAGCAGCGCCACCGACAAGCTCCGCGATCTACTCAGCCGCCCCG AGATCCTCACCATGCCGTGCTGCTACGACGGACTCACAGCTCGGCTAGTG GAAGACGCCGGGTTCCCGTTGACGTTCATGACAGGGTTTGGAGTTTCTGG CGCACACGGTTTGCCCGACACTCAGGTGATGGTGTCCTCTACACACTGCA ATTGAATATGGAGCGCATGCCACTTCCCCGAAAAGGTCATCTCAGATATG TGCCGTTCGCAATCAAACCGCAGTGGTGATGCCGAATTTAGAGGATGACA ATCAGCGATGATGCCGGCGTTAGACGGTGCCAATCGGCGGGTGCGCTTTG CGTTCGTTCATGTTTCCGACGCATCGTCGTAAGCCTGTCGTCTACTGCTG TTGGCGAGGCGTGCAAACCTACGGTGCTTGGCAGCGACATACTCATATCC CCCCCGATCCTTCCCGCGTGTGTGTGTGTGATGCAATGCGATTCGGCCGC ATTGGATTGTAGCTCCTGTCGTACGCCGAAATGCTGGCCTCCGCCACCAA TATTTGCTCCACCCTGCGAGACATTCCATGCATAGGGGACGGAGATACAG GCTACGGCAATAGTGTGAACGTCAAGCGGACGGTCAAGGGCTACGCGCAG GTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6024:25..877-

>mRNA_Ecto-sp13_S_contig6024.16640.1 ID=mRNA_Ecto-sp13_S_contig6024.16640.1|Name=mRNA_Ecto-sp13_S_contig6024.16640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6024:25..877- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGTGCATTACCCTGCCGCTCCAGCTGGTGCTCGTCTCCATCCT
AGTCTCCATCTGCGCACTCAGGGTGGAAGCGTTCTTGCCTTCCACCTTGA
CGAGCGGTTCGCTGTCTTTTGACCGTGTGCACAATGGCGGCTGCCGCAGC
AGCAGACACACTATTTCCAAGGCAGGCGTTAGCATGGCCATATCCTCGGC
GAAGACCAGCAGCGCCACCGACAAGCTCCGCGATCTACTCAGCCGCCCCG
AGATCCTCACCATGCCGTGCTGCTACGACGGACTCACAGCTCGGCTAGTG
GAAGACGCCGGGTTCCCGTTGACGTTCATGACAGGGTTTGGAGTTTCTGG
CGCACACGGTTTGCCCGACACTCAGCTCCTGTCGTACGCCGAAATGCTGG
CCTCCGCCACCAATATTTGCTCCACCCTGCGAGACATTCCATGCATAGGG
GACGGAGATACAGGCTACGGCAATAGTGTGAACGTCAAGCGGACGGTCAA
GGGCTACGCGCAGGTG
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