mRNA_Ecto-sp13_S_contig60225.16638.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60225.16638.1
Unique NamemRNA_Ecto-sp13_S_contig60225.16638.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: D8LLS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.300e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV
Sbjct:  206 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 243          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A7S1UGA4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGA4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.630e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LLRAINP EA LFD AAGV VRFRLGGY+FPP+IYYK+
Sbjct:  230 LLRAINPAEAQLFDAAAGVFVRFRLGGYSFPPTIYYKI 267          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A7S2RW27_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW27_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.460e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LLR INP EAALFD+A GVHVRFRLGG +FPP++YYKV
Sbjct:  166 LLRTINPREAALFDKATGVHVRFRLGGSSFPPALYYKV 203          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A822G513_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822G513_9NEOB)

HSP 1 Score: 65.5 bits (158), Expect = 2.910e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LL+ INPGEA L D AAGVHVRFRLGG  FPP+IYYK+
Sbjct:   58 LLKCINPGEAGLIDAAAGVHVRFRLGGTRFPPNIYYKL 95          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A8C5MEB2_9ANUR (Chromosome 11 open reading frame 65 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MEB2_9ANUR)

HSP 1 Score: 65.1 bits (157), Expect = 2.390e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LL++INP EA L D AAGVHVRFRLGG TFPP+IYYK+
Sbjct:   59 LLKSINPREAELIDAAAGVHVRFRLGGVTFPPNIYYKL 96          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A3P8ZRC5_ESOLU (Linkage group 21 C11orf65 homolog n=4 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZRC5_ESOLU)

HSP 1 Score: 64.3 bits (155), Expect = 5.230e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LLR +NP EA + D AAGVH+RFRLGG +FPPSIYYK+
Sbjct:   94 LLRRVNPNEADILDAAAGVHIRFRLGGTSFPPSIYYKI 131          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: H3AGU7_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AGU7_LATCH)

HSP 1 Score: 63.9 bits (154), Expect = 5.920e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LLR INP EA L D AAG+HVRFRLGG  FPP+IYYK+
Sbjct:   53 LLRCINPREAELLDAAAGIHVRFRLGGIKFPPNIYYKI 90          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: UPI001CFBF2CD (protein MFI n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBF2CD)

HSP 1 Score: 63.9 bits (154), Expect = 6.700e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LL+ +NP EAAL D AAGVH+RFRLGG  FPP+IYYK+
Sbjct:   60 LLKCVNPREAALLDSAAGVHIRFRLGGAKFPPNIYYKI 97          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A6P8QZJ6_GEOSA (uncharacterized protein C11orf65 homolog isoform X1 n=3 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QZJ6_GEOSA)

HSP 1 Score: 63.5 bits (153), Expect = 7.150e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            LL++INP EA L D AAG+H+RFRLGG  FPPSIYYK+
Sbjct:   53 LLKSINPREAELVDAAAGIHIRFRLGGVKFPPSIYYKI 90          
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Match: A0A2D4BYW4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYW4_PYTIN)

HSP 1 Score: 63.9 bits (154), Expect = 7.630e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 114
            +LRAINP EAAL D + G HVRFRLGG +FPP+IYYK+
Sbjct:  228 MLRAINPSEAALLDASMGAHVRFRLGGMSFPPTIYYKI 265          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60225.16638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLS9_ECTSI2.300e-17100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1UGA4_9STRA9.630e-1381.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RW27_9STRA2.460e-1278.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A822G513_9NEOB2.910e-1276.32(mimic poison frog) hypothetical protein (Fragment... [more]
A0A8C5MEB2_9ANUR2.390e-1176.32Chromosome 11 open reading frame 65 n=1 Tax=Leptob... [more]
A0A3P8ZRC5_ESOLU5.230e-1171.05Linkage group 21 C11orf65 homolog n=4 Tax=Esox luc... [more]
H3AGU7_LATCH5.920e-1173.68Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
UPI001CFBF2CD6.700e-1171.05protein MFI n=1 Tax=Protopterus annectens TaxID=78... [more]
A0A6P8QZJ6_GEOSA7.150e-1171.05uncharacterized protein C11orf65 homolog isoform X... [more]
A0A2D4BYW4_PYTIN7.630e-1171.05Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60225contigEcto-sp13_S_contig60225:267..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.4
Seed ortholog evalue4.9e-14
Seed eggNOG ortholog2880.D8LLS9
Preferred nameC11orf65
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28KCH@1,2QSTG@2759
Cds size114
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.75821-CDS-Ecto-sp13_S_contig60225:266..3801681463838.75821-CDS-Ecto-sp13_S_contig60225:266..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60225 267..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60225.16638.1prot_Ecto-sp13_S_contig60225.16638.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60225 267..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60225.16638.1

>prot_Ecto-sp13_S_contig60225.16638.1 ID=prot_Ecto-sp13_S_contig60225.16638.1|Name=mRNA_Ecto-sp13_S_contig60225.16638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
LLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV
back to top

mRNA from alignment at Ecto-sp13_S_contig60225:267..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60225.16638.1 ID=mRNA_Ecto-sp13_S_contig60225.16638.1|Name=mRNA_Ecto-sp13_S_contig60225.16638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60225:267..380- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCTAAGGGCCATCAACCCCGGGGAAGCGGCGCTATTCGACCGCGCCGC GGGCGTGCACGTTCGGTTTCGCCTCGGCGGTTACACGTTCCCGCCTTCCA TTTACTACAAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60225:267..380-

>mRNA_Ecto-sp13_S_contig60225.16638.1 ID=mRNA_Ecto-sp13_S_contig60225.16638.1|Name=mRNA_Ecto-sp13_S_contig60225.16638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60225:267..380- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCTAAGGGCCATCAACCCCGGGGAAGCGGCGCTATTCGACCGCGCCGC
GGGCGTGCACGTTCGGTTTCGCCTCGGCGGTTACACGTTCCCGCCTTCCA
TTTACTACAAGGTG
back to top