mRNA_Ecto-sp13_S_contig6016.16633.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 2.990e-143 Identity = 222/224 (99.11%), Postives = 224/224 (100.00%), Query Frame = 1
Query: 25 VQGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 696
+QGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRA+VKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD
Sbjct: 794 LQGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAVVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA) HSP 1 Score: 278 bits (711), Expect = 2.770e-87 Identity = 137/222 (61.71%), Postives = 175/222 (78.83%), Query Frame = 1
Query: 25 VQGGLKNDMLSILSGEADEG-KELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECY 687
+QG LK ++ +ILSG ++G KE ELP++++AD GS +AL ++L E++SEDEYFK CK+L +GVGE+TKSD+AIAGVSNA+VV FNV A+ +A +AR I+IGYY+VVY+V+D +Q +LD + SPTPDG Y GRA VKVIF+IGKVGNIAGS V DG + +G NV + R+GR+VHEG LK LKN+K D + MV GTECGIQV FEDFQEGD IECY
Sbjct: 356 MQGDLKGNVEAILSGMLEDGAKEKMELPIVLRADGPGSAEALASSLRELVSEDEYFKVTCKVLTAGVGEVTKSDIAIAGVSNAYVVCFNVAANHQAVEDARRGDIEIGYYNVVYDVLDQVQERLDRIRSPTPDGVYIGRAQVKVIFSIGKVGNIAGSEVLDGEVRRGSNVRIMRMGRVVHEGALKVLKNVKADVEAMVAGTECGIQVSDFEDFQEGDFIECY 577
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A7S2SSV4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSV4_9STRA) HSP 1 Score: 228 bits (581), Expect = 1.780e-70 Identity = 117/223 (52.47%), Postives = 168/223 (75.34%), Query Frame = 1
Query: 28 QGGLKNDMLSIL-SGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
Q LK + +L SG A KE+ E+PV+IKADVQGS +AL T+L E+++EDE + K K+L S VGE+TKSDVAIAGVS A+++ FNV A+ +A +AR G++IGYYS+VY++++++++++ E++SPTPDGE G+A VK++F+IGKVG IAG V DG I K GNV V R RIV+EG+L TLK++K D K+ G++CG+ E +E +EGD++ECYK+
Sbjct: 129 QADLKQSLTDMLASGGAL--KEIREVPVLIKADVQGSVEALTTSLRELVAEDEITQVKVKVLQSSVGEVTKSDVAIAGVSKAWILAFNVAANFQAQEDAREKGLEIGYYSIVYDILEEMESRMQEVLSPTPDGELVGKAEVKMVFDIGKVGKIAGCGVVDGDILKAGNVRVLRGPRIVYEGQLTTLKHVKEDVTKISAGSDCGMAFEEWEGMEEGDVVECYKI 349
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK) HSP 1 Score: 236 bits (602), Expect = 6.920e-70 Identity = 122/224 (54.46%), Postives = 167/224 (74.55%), Query Frame = 1
Query: 25 VQGGLKNDMLSIL-SGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
++G L++++ +I +GEA +G E + V+IKADVQGS +AL +L ++ + DE + K+L + GE+TKSDVA+A VS+A VV FNV A+ +A EAR GIDI Y S+VY+V+DD++A++ E++SPTPDGEY G+A VK +F+IGKVG IAGS V DG + G NV V R R++HEG + TLKNLK DAD+MV GTECGI +E FEDF+EGD+IECY +
Sbjct: 499 LEGDLRSNLRAIFETGEALDGVERKTVNVVIKADVQGSAEALADSLRQLKARDEIGEVTVKVLAAAAGEVTKSDVALASVSDALVVAFNVAANFQAQEEARERGIDITYASIVYDVLDDLEARIQEVLSPTPDGEYAGKARVKQVFDIGKVGRIAGSEVLDGRVINGANVRVLRGPRVIHEGVMGTLKNLKADADEMVAGTECGIGLEAFEDFEEGDVIECYVV 722
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A7S2Y1F3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F3_9STRA) HSP 1 Score: 219 bits (558), Expect = 1.590e-63 Identity = 107/207 (51.69%), Postives = 153/207 (73.91%), Query Frame = 1
Query: 67 GEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECY 687
G +G E + V+IKADVQGS +AL TAL + D++ + K+L + GEI + D+A+A VSNA V+GFNV A+ +A +AR N I++ Y +VVY ++D+++ ++ E++SPTP+GEY G+A + +FNIGKVGNIAGS+V DG + KG NV V R GR++HE +KTLKN+KVD ++MV GTECGIQ++GFE+F+ GD+IE Y
Sbjct: 510 GAGLDGIERKTVNVVIKADVQGSAEALATALKALKKADDFGEVTVKVLSATPGEINQGDIALASVSNALVIGFNVAANYQAQEDARKNEIEVMYATVVYEILDEMEERMQEVLSPTPEGEYIGKAEILQVFNIGKVGNIAGSNVLDGRVKKGSNVRVMRAGRVIHETTMKTLKNVKVDVEEMVAGTECGIQLQGFEEFEVGDIIESY 716
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: W7T2T0_9STRA (Translation initiation factor if-2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2T0_9STRA) HSP 1 Score: 212 bits (539), Expect = 6.340e-61 Identity = 105/222 (47.30%), Postives = 156/222 (70.27%), Query Frame = 1
Query: 31 GGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 696
G ++ +LSI D K+ E+ V+IKADVQGS +A+ TA+S + ED+ + K+L SGVG++T++DVA+AGVS A ++ FNV AD A EAR G++I Y++V+Y+++D ++AK+ E++SPTP+GEY G A VK++F IGKVG +AG V DG I +GG V V R IV++G L+TL+N+K D +M G ECG+ + +EDF+ D++ECY +D
Sbjct: 473 GSMQAQVLSIFG--TDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVD 692
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A7S2B294_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B294_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.010e-60 Identity = 111/225 (49.33%), Postives = 160/225 (71.11%), Query Frame = 1
Query: 28 QGGLKNDMLSILSGEAD-EGKELFE--LPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
+G LKN ++ L+ D +G++L E + V IKADV GS +AL TAL ++ ++E + K K+L SGVG++T+SD+AIA VSNA+ + FNV +A +AR ++IGYYSVVY+V+D+++ ++ E++SPTP+G+YTG+A VK IF+IGKVG IAG +V DG + K N V R RIVHEG+LKTLK++K D M G+ECG+ + +E+ EGD+IE Y M
Sbjct: 556 EGDLKNSVMERLTQMGDLQGEQLEEKEVHVCIKADVMGSAEALVTALKQLEMKNEIARVKVKVLLSGVGDVTQSDLAIADVSNAWTIAFNVATIYQAQEDARNKNLEIGYYSVVYDVLDEMEVRMKEVLSPTPEGDYTGKAEVKAIFDIGKVGKIAGCAVLDGEVLKSANFRVLRGPRIVHEGRLKTLKHVKEDVQSMSAGSECGVNFQDWEEMMEGDIIESYVM 780
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: K0TL50_THAOC (IF-2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TL50_THAOC) HSP 1 Score: 189 bits (479), Expect = 8.100e-57 Identity = 98/216 (45.37%), Postives = 146/216 (67.59%), Query Frame = 1
Query: 49 MLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVS-NAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
M S+ A KEL E+ V++KADVQGS +AL +L ++ E+E + K K+L S G++TKSD+A+A V+ V+ FN GA+ A +AR + I YYSVVY+ ++ +++++ E++SPTP+GEY G AIV+ +FNIG GNIAGS +DG+I KG NV V R +I+ E K++TL+N K + D + G ECGI + FE+F+ GD+IE + +
Sbjct: 1 MQSVAGIFAGGQKELREICVVVKADVQGSAEALAQSLRDLKLENEEVEVKIKVLISENGDVTKSDIAVASVTPGTTVIAFNTGANAAALEDARVLDVPIEYYSVVYDAIESVESRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCQDGIIKKGSNVRVMRGDKILQESKVRTLRNFKAEVDSIQTGDECGIGLLDFEEFEVGDVIESFVV 216
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: A0A7S2PSJ2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSJ2_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.860e-56 Identity = 101/223 (45.29%), Postives = 148/223 (66.37%), Query Frame = 1
Query: 28 QGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVS-NAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
Q GL + + SG E +E+ V++KADVQG+ +AL +L+E+ E+E + K+L S G+ITKSD+A+A V+ + V+ FN GA+ A +ARA G+ I YYSVVY+ ++ ++ ++ E++SPTP+GEY G AIV+ +FNIG GNIAGS DG+I KG NV V R +I+ E K+KTL+N K + D + G ECGI + +EDF+ D+IE Y +
Sbjct: 131 QSGLMESLAGLFSGGQKERREIC---VVVKADVQGAAEALARSLTELRLENEEAEVGIKVLISEAGDITKSDIAVASVTPDTTVIAFNTGANAAAQDDARALGVPIEYYSVVYDAIESVECRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCRDGIIKKGSNVRVMRGDKILIESKVKTLRNFKAEVDAITTGDECGIGLLDYEDFEPDDIIESYVV 350
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Match: B5YNY2_THAPS (Bacterial protein translation initiation factor 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNY2_THAPS) HSP 1 Score: 194 bits (494), Expect = 4.080e-55 Identity = 103/223 (46.19%), Postives = 149/223 (66.82%), Query Frame = 1
Query: 28 QGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVS-NAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAIVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKM 693
Q GL + I SG KEL E+ V++KADVQGS +AL +LSE+ E+E + K K+L S G++TKSD+A+A V+ V+ FN GA+ A +AR G+ I YYSVVY+ ++ ++ ++ E++SPTP+GEY G AIV+ +FNIG GNIAGS DG+I KG NV V R +I+ E K++TL+N K + D + G ECGI + +E+F+ GD+IE + +
Sbjct: 370 QSGLMQSVAGIFSGGQ---KELREICVVVKADVQGSAEALARSLSELKLENEEVEVKIKVLISEAGDVTKSDIAVASVTPGTTVIAFNAGANVAAMDDARMLGVPIEYYSVVYDAIESVECRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCRDGIIKKGSNVRVLRGDKILTESKVRTLRNFKSEVDTITTGDECGIGLLDYEEFEVGDVIESFVL 589 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6016.16633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6016.16633.1 >prot_Ecto-sp13_S_contig6016.16633.1 ID=prot_Ecto-sp13_S_contig6016.16633.1|Name=mRNA_Ecto-sp13_S_contig6016.16633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp MPFLTYCCVQGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQback to top mRNA from alignment at Ecto-sp13_S_contig6016:705..3658+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6016.16633.1 ID=mRNA_Ecto-sp13_S_contig6016.16633.1|Name=mRNA_Ecto-sp13_S_contig6016.16633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6016:705..3658+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6016:705..3658+ >mRNA_Ecto-sp13_S_contig6016.16633.1 ID=mRNA_Ecto-sp13_S_contig6016.16633.1|Name=mRNA_Ecto-sp13_S_contig6016.16633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6016:705..3658+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |