mRNA_Ecto-sp13_S_contig6010.16623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 720 bits (1859), Expect = 1.760e-259 Identity = 364/380 (95.79%), Postives = 371/380 (97.63%), Query Frame = 1
Query: 1 MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSSSLDVCCVEGCEVCGGVGCTPANTSSLTSADCCATEIVASGTFCDVSMAAPCIITTAAAANDSVCENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPGVDATQCCSTLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGLDCCSEEIAVVNDLCSVTNAAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVAATEAPVAGTREFQFTQAPTQLLDVNGDGLVNSADTGIVGD 1140
MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQS+SLDVCCVEGCEVCGGV CTPANTSSLTSADCCATEIV SGTFCDVSMAAPCIITTAAAANDSVCENGQTGV DPDTDVCCPLECG+SCGGEGCGSIPGV+ATQCCS+LIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGG GCG+VTGLTGLDCCSEEIAVVNDLCSVTN APCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGG GCGSIVGTNGAEDCCS TIL TGVDC+EGVMAPCIMLNGTYTDAPMAAPTFPP AAPGTTVAPGAVAATEAPVAGTREF+FTQAPTQLLDVNGDGLVNSADTGIVGD
Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAPGAVAATEAPVAGTREFRFTQAPTQLLDVNGDGLVNSADTGIVGD 380
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 370 bits (950), Expect = 1.870e-122 Identity = 206/369 (55.83%), Postives = 248/369 (67.21%), Query Frame = 1
Query: 19 SFTALVCVAIALL--VGTMTPAGAVCSNGLEGIQSSSLDVCCVEGCEVCGGVGCTPANTSSLTSADCCATEIVASGTFCDVSMAAPCIITTAAAANDSVCENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPGVDATQCCSTLIIESGAVCSDTVSAPCV-VGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGLDCCSEEIAVVNDLCSVTNAAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGTYTDAPMAAPTFPPVA----APGTTV--APGAVAATEAPVAGTREFQF-----TQAPTQL 1083
+F AL+ V +AL VG T C+ G+ G++S+SLDVCC C CGGVGCTPANTSSLT+ DCCATEI SG C + APCI++T AA+ DSVC+NGQTGVQDPDTDVCCPLECGESCGGEGCG+IPGVDA+QCC+++I +SG VC D + APC V A AD+ CSNG GIE+ +CCD AC +CGG+ CG+V GLTG DCC+ I ++LCS +APCV+DPP+ ASTC NGLAGV GSVCCAE CNGV TNGAEDCCSATIL + C + APC+M+ GT+T AP PT APG TV AP + T AP G+R+ F T APT +
Sbjct: 5 NFAALLGVVLALAGSVGAQT-----CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADS--VCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVD--TAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTPTSQTAAPTPGSRDLDFGTGVPTPAPTSV 364
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 347 bits (891), Expect = 4.560e-117 Identity = 178/200 (89.00%), Postives = 185/200 (92.50%), Query Frame = 1
Query: 1 MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSSSLDVCCVEGCEVCGGVGCTPANTSSLTSADCCATEIVASGTFCDVSMAAPCIITTAAAANDSVCENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPGVDATQCCSTLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLC 600
MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQS+SLD CCVE C +CGGVGCTPANTSSLTSADCCATEI+ SGT C+VSMAAPCIITTAAA+NDSVCENGQTGVQDPDTDVCCPL CG+SCGGEGCGS+ GVDATQCCS LIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLI C C
Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 278 bits (711), Expect = 8.420e-89 Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 1
Query: 712 MDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVAATEAPVAGTREFQFTQAPTQLLDVNGDGLVNSADTGIVGDTNG 1149
MDPPDFVASTCPNG+AGVQDGSVCCAEECNGVCGG GCGSIVGTNGAEDCCS+TIL TGVDCD GV+APCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVA TEAP+AGTREFQFTQAPTQLLDVNGDGLVNSADTGIVGDTNG
Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVATTEAPLAGTREFQFTQAPTQLLDVNGDGLVNSADTGIVGDTNG 146
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 144 bits (362), Expect = 8.690e-34 Identity = 134/464 (28.88%), Postives = 173/464 (37.28%), Query Frame = 1
Query: 88 CSNGLEGIQSSSLDVCCVEGCEVCGGVGCTPANTSSLTSADCCATEIVASGTFCDVSMAAPCIITTAAAANDSV-----------------------------------------------------------------CENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPG-VDATQCCSTLIIESGAVCSDTVSAPCVV-GAAEADN-------------------------------------------STTCSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGLD-CCSEEIAVVNDLCSVTNAAPCVMD----PPDFVA-------------------------------------------------------STCPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGTYTDAPMAAPT 969
CSNG+ GIQS + CC+ C CGG GC L +CC +EI G C V+MAAPC++ +A A V C NG G+Q + CC ECG CGG GC + G + CC + I + G +CS T++APCVV G+A A + + TCSNGI GI+ CC A CG CGG+GC + G G D CC EI +LCSVT AAPCV+D P VA TC NG+ G+Q G+ CC EC+G CGG GC + G G ++CC + I D G C + APC++ +P+A PT
Sbjct: 1977 CSNGIPGIQSGNA--CCLAECGGCGGSGCAQLG-GGLGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDTCSNGIPGIQSGN--ACCLAECG-GCGGSGCAQLGGGLGEDNCCQSEIEDFGKLCSVTLAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSGNACCLAECDG-CGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPT 2431
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 137 bits (346), Expect = 7.570e-32 Identity = 117/328 (35.67%), Postives = 151/328 (46.04%), Query Frame = 1
Query: 40 VAIALLVGTMTPAGAVCSNGLEGIQSSSLDVCCVEGCEVCGGVGCTPANTSSLTSADCCATEIVASGTFCDVSMAAPCIITTAAA---ANDSVCENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPGVDATQCCSTLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNL-------ICCDAACGLCGGAGCGDVTG-LTGLDCCSEEIAVVNDLCSVTNAAPCVMDPPDFVASTCPNGLA-----------------GVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGT 939
V +ALLV + G C L+GI CC GCE CGG GC+ LT ADCC ++I+A+G C +APC++ ++ A+ C+ G DVCC ECG +CGG GCGS G+ A +CC++ I + C SAPCVV + D S T CC A C CGG+GC D G LTG DCC+ +I+ +LCSVT AAPC++D T P GV G CC+ C CGG GC G DCC++ I + C APCI+ T
Sbjct: 6 VLLALLVVGVAK-GQTCDGILKGIY------CCSAGCEECGGSGCSDRG-DGLTGADCCTSDILAAGKACG---SAPCLLEEGSSPTPASSGGCDGILQG------DVCCSAECG-TCGGSGCGSRAGLTANECCTSTIAAANVPCG---SAPCVV---DGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVD-----GDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCCSAGCV-ECGGSGCSDRGGGLTGADCCTSDISNL---CSVTGAAPCIVDGDT 297
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.080e-27 Identity = 98/294 (33.33%), Postives = 122/294 (41.50%), Query Frame = 1
Query: 307 VCENGQTGVQDPDTDVCCPLECGESCGGEGCGSIPG-VDATQCCSTLIIESGAVCSDTVSAPCVV-GAAEADNSTT-------------------------------------------CSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGLD-CCSEEIAVVNDLCSVTNAAPCVMD-----PPDFVAST---------------------------------CPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNG 936
+C NG G+Q + CC ECG CGG GC + G + CC + I + G +CS ++APCVV G+A A + CSNGI GI+ CC A CG CGG GC + G G D CC EI LCSVT AAPCV+D P T C NG+ G+Q GS CC EC G CGG GC + G GA++CC + I D G C + APCI+ +G
Sbjct: 1876 MCSNGIPGIQSGN--ACCLAECG-GCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLCSNGIPGIQ--TGNACCLAECGTCGGRGCAEYGGGLGEDSCCQSEIEDFGQLCSVTMAAPCVVDGSAPAPSPMAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQTGSACCLAECGG-CGGTGCAQLGGGLGADNCCQSEIEDFGALCSATMTAPCIVDSG 2163
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 115 bits (287), Expect = 2.250e-24 Identity = 78/169 (46.15%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 499 GAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGL-DCCSEEIAVVND--LCSVTNAAPCVM-----DP--PDF-------VASTCPNGLAGVQDGSVCCAEECNGVCGGVGCGSIVGTNGAEDCCSATILDTGVDCDEGVMAPCIMLNGTYTDAP 954
GA++ +TCSNGI G+ D +CC ACG CGG GCG + G G DCC + I + C APCVM P P F STC NG+AG QDG++CC E C G CGG GCG+I GT G+++CC +TIL GV C E APCI+ YT AP
Sbjct: 282 GASDPVAPSTCSNGIPGVSD--GDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCG---EAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEIC-GRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE---APCIIEG--YTPAP 439
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: D8LMM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM1_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 5.390e-16 Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1
Query: 1 MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSSSLDVCCV 141
MLGKA SFTALVCVAIALLVGTMTPAGAVCSNGLEGIQS+SLD CV
Sbjct: 1 MLGKAMSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSTSLDAWCV 47
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.200e-15 Identity = 61/184 (33.15%), Postives = 79/184 (42.93%), Query Frame = 1
Query: 307 VCENGQTGVQDPDTDVCCPLECGESCGGEGCGSI--PGVDATQCCSTLIIESGAVCSDTVSAPCVVGAAEAD--------------------------------------------NSTTCSNGIVGIEDPVNLICCDAACGLCGGAGCGDVTGLTGLD-CCSEEIAVVNDLCSVTNAAPCVMD 717
VC G G++ D VCCPL C + CGGEGC ++ P A CC + ++ +G CS + APCV+ + CSNGI GI+ + CC A CG CGG GC + G G D CC I +LCSVT AAPC++D
Sbjct: 611 VCSTGIRGIESSDGAVCCPLGCTQ-CGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDETPTPEPNAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDVCSNGIPGIQS--GITCCLAECGECGGPGCAEFGGGLGQDNCCQGRIEEYGELCSVTLAAPCIVD 791 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6010.16623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6010.16623.1 >prot_Ecto-sp13_S_contig6010.16623.1 ID=prot_Ecto-sp13_S_contig6010.16623.1|Name=mRNA_Ecto-sp13_S_contig6010.16623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp MLGKATSFTALVCVAIALLVGTMTPAGAVCSNGLEGIQSSSLDVCCVEGCback to top mRNA from alignment at Ecto-sp13_S_contig6010:318..5689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6010.16623.1 ID=mRNA_Ecto-sp13_S_contig6010.16623.1|Name=mRNA_Ecto-sp13_S_contig6010.16623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6010:318..5689- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6010:318..5689- >mRNA_Ecto-sp13_S_contig6010.16623.1 ID=mRNA_Ecto-sp13_S_contig6010.16623.1|Name=mRNA_Ecto-sp13_S_contig6010.16623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6010:318..5689- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |