mRNA_Ecto-sp13_S_contig6006.16608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6006.16608.1
Unique NamemRNA_Ecto-sp13_S_contig6006.16608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.470e-27
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
            T TSLTNFFAFLLGSM+SLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct:  425 TYTSLTNFFAFLLGSMTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 484          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.810e-27
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
            T TSLTNFFAF+LGSMSSLPAVEYFCLYA TAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct:  374 TYTSLTNFFAFMLGSMSSLPAVEYFCLYAGTAILFDFFLQMTAFVALLTMDANRQKAGKI 433          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.820e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
            T TSLTNFFAFLLGS++SLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct:  397 TYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 456          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.170e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
            T TSLTNFFAFLLG+ SSLPAV+YFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct:  277 TYTSLTNFFAFLLGAQSSLPAVQYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 336          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.510e-21
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 2
Query:   11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMT----AFVALLTMDANRQKAGKI 184
            TSLTNFFAF+LG +SSLPAVEYFCLYA TAILFDFFL  +    AFVALLTMDANRQKAGKI
Sbjct:   56 TSLTNFFAFMLGRVSSLPAVEYFCLYAGTAILFDFFLPESKNNRAFVALLTMDANRQKAGKI 117          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 2
Query:   11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
            TS+ NF  F+LG+ S+LPA+EYFC+YA  A+LFDF LQ+ +F+ALL  D +RQ+A K
Sbjct:  421 TSIINFMVFMLGANSTLPAIEYFCIYAGVAVLFDFLLQVPSFIALLAYDTDRQRARK 477          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A7S1UKD5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.690e-12
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAG 178
            TS T+F AF+LGSMS+LP +EY C YAA AIL DF LQ+T FVA L+MD  R + G
Sbjct:  275 TSATDFCAFMLGSMSNLPGIEYMCRYAAVAILCDFLLQVTFFVAFLSMDMQRLERG 330          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0001EFDEDB (niemann-Pick C1 protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFDEDB)

HSP 1 Score: 65.9 bits (159), Expect = 7.960e-12
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
            +S +  F F LG++SS+PAV+ F LYAA AI FDFFLQ+T F+AL T D  RQ+ G++
Sbjct:   28 SSFSESFCFFLGALSSMPAVKVFSLYAALAIFFDFFLQITCFLALFTTDVRRQRNGRL 85          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0018640D13 (NPC1-like intracellular cholesterol transporter 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018640D13)

HSP 1 Score: 67.8 bits (164), Expect = 9.330e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 2
Query:   14 SLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
            SL+    F LG++SS+PAV+ F LYAA A+L DF LQMTAFVALL++DA RQ AG+
Sbjct:  770 SLSESVCFFLGALSSMPAVKSFALYAALAVLMDFVLQMTAFVALLSLDARRQDAGR 825          
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0015B029F4 (NPC1-like intracellular cholesterol transporter 1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B029F4)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-11
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 2
Query:   14 SLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
            S++    F LG +SS+PAV+ F LYAA A+LFDF LQ+TAFVALL++DA RQ AG+
Sbjct:  777 SMSESICFFLGGLSSMPAVKSFALYAALAVLFDFALQITAFVALLSLDARRQDAGR 832          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY95_ECTSI3.470e-2796.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY98_ECTSI8.810e-2795.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY89_ECTSI8.820e-2795.00Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D8LCK4_ECTSI4.170e-2693.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGQ4_9PHAE7.510e-2182.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YJJ3_9STRA1.610e-1357.89Patched family-domain-containing protein n=1 Tax=T... [more]
A0A7S1UKD5_9STRA6.690e-1262.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI0001EFDEDB7.960e-1255.17niemann-Pick C1 protein n=1 Tax=Trichinella spiral... [more]
UPI0018640D139.330e-1262.50NPC1-like intracellular cholesterol transporter 1 ... [more]
UPI0015B029F41.280e-1160.71NPC1-like intracellular cholesterol transporter 1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6006contigEcto-sp13_S_contig6006:7738..8508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.33395-CDS-Ecto-sp13_S_contig6006:7738..78001681463836.33395-CDS-Ecto-sp13_S_contig6006:7738..7800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6006 7739..7800 -
1681463836.3498495-CDS-Ecto-sp13_S_contig6006:8384..85081681463836.3498495-CDS-Ecto-sp13_S_contig6006:8384..8508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6006 8385..8508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6006.16608.1prot_Ecto-sp13_S_contig6006.16608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6006 7739..8508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6006.16608.1

>prot_Ecto-sp13_S_contig6006.16608.1 ID=prot_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
PHRHVADELLRLPPGQHVVPSCGGVLLPLRRHRYLVRLLPPDDSFRCPAN
HGRQPPEGRQDR
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mRNA from alignment at Ecto-sp13_S_contig6006:7738..8508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6006.16608.1 ID=mRNA_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6006:7738..8508- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCACAGACACGTCGCTGACGAACTTCTTCGCCTTCCTCCTGGGCAGCA TGTCGTCCCTTCCTGCGGTGGAGTACTTCTGCCTCTACGCCGCCACCGCT ATCTTGTTCGACTTCTTCCTCCAGGTAAAAAAGAAGAGTGGTTGTATGAG CTACACAATCTGACACAGTCCGGATGGAGCACGTACAAGCATGTATTTTC GTCTCTCGCCTCGTGTCTACTACGCCGCTAGTTGTTCATACAGGCAGCCA CAAGCAGGCTCGTTCTTGCGATCTACGGTACGAAGCATTCGCGCTCCTGT GGGATTGGGTCATGCCAACGAAGCGCAACGCCCGTTCCCGTCGTTAATTA CTCTAGACCCCTCACACACGTACTTCATGTCGAGTATCGATTTTGCGCGT GTTTTTAGGCGAACTTGTCCGTGGGACCGTTTTTATCATGAGTCCGACTC TAGCCCCCCCCACGCACACGTGCTCCCAAGCAGTCATTCAGAAACTCGTT CAACAGTACTCTCTCAACAAGCGATCACCTAATCTTTGAAGGTATGCGAA CTGGTACCGTCTGCAGATATTGCGAGGATTGATTGATGTCGAGTATCACG CTTTGCGCGTGTTTTAAGGCGAAGATCCCCATGGGACCGCTAGTGCTGTA GTATGAGCCTGACTCTTCAGCCCGTGAACCATTCCCACCCCAACCACTTC TTGTCCAGATGACAGCTTTCGTTGCCCTGCTAACCATGGACGCCAACCGC CAGAAGGCCGGCAAGATCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6006:7738..8508-

>mRNA_Ecto-sp13_S_contig6006.16608.1 ID=mRNA_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6006:7738..8508- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCACAGACACGTCGCTGACGAACTTCTTCGCCTTCCTCCTGGGCAGCA
TGTCGTCCCTTCCTGCGGTGGAGTACTTCTGCCTCTACGCCGCCACCGCT
ATCTTGTTCGACTTCTTCCTCCAGATGACAGCTTTCGTTGCCCTGCTAAC
CATGGACGCCAACCGCCAGAAGGCCGGCAAGATCGA
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