mRNA_Ecto-sp13_S_contig6006.16608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI) HSP 1 Score: 111 bits (278), Expect = 3.470e-27 Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query: 5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
T TSLTNFFAFLLGSM+SLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct: 425 TYTSLTNFFAFLLGSMTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 484
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI) HSP 1 Score: 110 bits (275), Expect = 8.810e-27 Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query: 5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
T TSLTNFFAF+LGSMSSLPAVEYFCLYA TAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct: 374 TYTSLTNFFAFMLGSMSSLPAVEYFCLYAGTAILFDFFLQMTAFVALLTMDANRQKAGKI 433
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI) HSP 1 Score: 110 bits (275), Expect = 8.820e-27 Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query: 5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
T TSLTNFFAFLLGS++SLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct: 397 TYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 456
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.170e-26 Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query: 5 TDTSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
T TSLTNFFAFLLG+ SSLPAV+YFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI
Sbjct: 277 TYTSLTNFFAFLLGAQSSLPAVQYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 336
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 7.510e-21 Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 2
Query: 11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMT----AFVALLTMDANRQKAGKI 184
TSLTNFFAF+LG +SSLPAVEYFCLYA TAILFDFFL + AFVALLTMDANRQKAGKI
Sbjct: 56 TSLTNFFAFMLGRVSSLPAVEYFCLYAGTAILFDFFLPESKNNRAFVALLTMDANRQKAGKI 117
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13 Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 2
Query: 11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
TS+ NF F+LG+ S+LPA+EYFC+YA A+LFDF LQ+ +F+ALL D +RQ+A K
Sbjct: 421 TSIINFMVFMLGANSTLPAIEYFCIYAGVAVLFDFLLQVPSFIALLAYDTDRQRARK 477
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: A0A7S1UKD5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 6.690e-12 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query: 11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAG 178
TS T+F AF+LGSMS+LP +EY C YAA AIL DF LQ+T FVA L+MD R + G
Sbjct: 275 TSATDFCAFMLGSMSNLPGIEYMCRYAAVAILCDFLLQVTFFVAFLSMDMQRLERG 330
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0001EFDEDB (niemann-Pick C1 protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFDEDB) HSP 1 Score: 65.9 bits (159), Expect = 7.960e-12 Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2
Query: 11 TSLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKI 184
+S + F F LG++SS+PAV+ F LYAA AI FDFFLQ+T F+AL T D RQ+ G++
Sbjct: 28 SSFSESFCFFLGALSSMPAVKVFSLYAALAIFFDFFLQITCFLALFTTDVRRQRNGRL 85
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0018640D13 (NPC1-like intracellular cholesterol transporter 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018640D13) HSP 1 Score: 67.8 bits (164), Expect = 9.330e-12 Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 2
Query: 14 SLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
SL+ F LG++SS+PAV+ F LYAA A+L DF LQMTAFVALL++DA RQ AG+
Sbjct: 770 SLSESVCFFLGALSSMPAVKSFALYAALAVLMDFVLQMTAFVALLSLDARRQDAGR 825
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Match: UPI0015B029F4 (NPC1-like intracellular cholesterol transporter 1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B029F4) HSP 1 Score: 67.4 bits (163), Expect = 1.280e-11 Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 2
Query: 14 SLTNFFAFLLGSMSSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGK 181
S++ F LG +SS+PAV+ F LYAA A+LFDF LQ+TAFVALL++DA RQ AG+
Sbjct: 777 SMSESICFFLGGLSSMPAVKSFALYAALAVLFDFALQITAFVALLSLDARRQDAGR 832 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6006.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6006.16608.1 >prot_Ecto-sp13_S_contig6006.16608.1 ID=prot_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp PHRHVADELLRLPPGQHVVPSCGGVLLPLRRHRYLVRLLPPDDSFRCPANback to top mRNA from alignment at Ecto-sp13_S_contig6006:7738..8508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6006.16608.1 ID=mRNA_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6006:7738..8508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6006:7738..8508- >mRNA_Ecto-sp13_S_contig6006.16608.1 ID=mRNA_Ecto-sp13_S_contig6006.16608.1|Name=mRNA_Ecto-sp13_S_contig6006.16608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6006:7738..8508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |