mRNA_Ecto-sp13_S_contig1014.166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1014.166.1
Unique NamemRNA_Ecto-sp13_S_contig1014.166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 625 bits (1613), Expect = 5.250e-215
Identity = 385/425 (90.59%), Postives = 394/425 (92.71%), Query Frame = 1 
Query:  106 MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRG--EREVEIPTLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEILRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFLPEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRNSSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 1374
            MNFVRSNEWVSRRRARGGSFDSPA+RVNIVDRRT PASSG+R   EREVEIPTL ILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVA+AGSRMAHMEILRALAPILRQHV+SLD SRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN VSDAAVVAITTGVCRQSLRWLDLT TAIS AA    AASLR LQRLE             VAALARDLRLPAFLPEAPKT+ARSSRALLLGSKWSETQLRSLPKKRAATTAATAAG  AK+WRNS ASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct:    1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN-VSDAAVVAITTGVCRQSLRWLDLTCTAISAAA----AASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI5.250e-21590.59Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1014contigEcto-sp13_S_contig1014:3774..8930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score632.1
Seed ortholog evalue1.9e-178
Seed eggNOG ortholog2880.D7FQD2
Model size2815
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
Cds size1272
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1014.166.1prot_Ecto-sp13_S_contig1014.166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1014 5212..8578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.1806986-UTR-Ecto-sp13_S_contig1014:3773..52111681462510.1806986-UTR-Ecto-sp13_S_contig1014:3773..5211Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1014 3774..5211 -
1681462510.2296557-UTR-Ecto-sp13_S_contig1014:8578..86251681462510.2296557-UTR-Ecto-sp13_S_contig1014:8578..8625Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1014 8579..8625 -
1681462510.2390375-UTR-Ecto-sp13_S_contig1014:8872..89301681462510.2390375-UTR-Ecto-sp13_S_contig1014:8872..8930Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1014 8873..8930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.1914356-CDS-Ecto-sp13_S_contig1014:5211..58081681462510.1914356-CDS-Ecto-sp13_S_contig1014:5211..5808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1014 5212..5808 -
1681462510.2007587-CDS-Ecto-sp13_S_contig1014:6266..64041681462510.2007587-CDS-Ecto-sp13_S_contig1014:6266..6404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1014 6267..6404 -
1681462510.2103322-CDS-Ecto-sp13_S_contig1014:6857..70311681462510.2103322-CDS-Ecto-sp13_S_contig1014:6857..7031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1014 6858..7031 -
1681462510.2204475-CDS-Ecto-sp13_S_contig1014:8215..85781681462510.2204475-CDS-Ecto-sp13_S_contig1014:8215..8578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1014 8216..8578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1014.166.1

>prot_Ecto-sp13_S_contig1014.166.1 ID=prot_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRGEREVEIP
TLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEI
LRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLT
GTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFL
PEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRN
SSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEE
GGRKLLLNLVQGIVRLWPAVPSR*
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mRNA from alignment at Ecto-sp13_S_contig1014:3774..8930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1014.166.1 ID=mRNA_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5157bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1014:3774..8930- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCACATCCATCAAATCAATTTACGCCTAGACGGCGGAAGTGCAAGTT
GTGGAAATGTGAGTGGTCTTCTGGCCTTGCTGCTGCCCACACGTCCTGTG
ATATGTACCATTAATTGCACTTAGTAGGGATGGATGGTCGCTTTTGTCTT
GTAAGTGAGACTACAAGCAGCAGACTGAACATGCACCAAATGCCGAAGAG
GTTCAAGGGTTGAACCAATACAGCAGCAGCTGTACTCAGAGCACACCCGC
TAAACAGGGTTTACGAATCTCTCTACGCATCCCCCTTCCCACCCCCATCG
CCCAGACCAACCGGCGGGGGCTGCTGCGAACAGATAAGGCGCTGCTACGT
TGATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGC
GGCGGGTCTTTCGACTCACCGGCGCTACGAGTCAACATCGTCGACCGCCG
AACTCGTCCCGCAAGCAGCGGCATCAGAGGCGAACGGGAGGTTGAGATCC
CAACTTTAAGCATTCTTTGCCTCCGAAGCTTGGAGTCGTCCCTCGGCAAG
GGCCTCGCGACCTTCGACCTTCAGGACCTTCCCCTCGGGCTGGCCGAGAC
TATGTACGACTTCGTTGCCGCCGCCGGTTCGCGAATGGCCCACATGGAAA
TCCTTCGAGCGCTCGCCCCAATTTTGCGGCAGCACGTAAACTCCCTCGAC
TTGAGCAGAGCCAAGGTCAGGGTCCCATCACGAGGCTGTTGTTGACTATG
TACGTCGTATATGCTACACATACTGTGACGAGTACCAGGTGTACTACTGT
CCAGGAGTATGTTGCGGCGGGGGTTCGGACTTAGGGTCGGTCTTAACCAA
GAAATCGGTTCCCGATTTCGAATTTGATTATAAGAATACAAGAGGCGGAT
CTACCTGAATCCGACCTGAAATGGCCCGTGTGTCTTAACGGGAGATCTGC
CAGATGGATGGAAACGAATATCCGCAGTCCACCGCGAACAACCCGAGAGG
TCCGCCGCTTGCCGACTGCCAAGTTGCTGTTGTAACGTCTGTCATGATGT
GGCCACACCACATGAGGAGCTATCGCTCCCGAGATGCACACACCAAACGC
GTACATGGCCTGCGCGGGGTACTGACACGACGTCTATGCATGTGAGACTC
TGAATCGAGCCTCGTCAAACAGAAAGCTACCGATTTGTCTGAGTATTTGA
GGTTCGACAACCCACGGGAGATTGCGCCACAGACCAGTTCATCCCACACA
CGTTTTTTTTCGGCGCCAGTCAGGTGCAACAACGATGCGCAGTCACCCAC
CCTTTGGGTTGGCTTTTTGTGCTCTCTCTCTCCTCCACGCTCGGCGGTGG
ATGGGGTTCGTGTGGATGGGGGTGGGTGGGCATGCGCCGTACGGGCGAGT
AGACCGCTAATGTTCGAAGTTGGTTTCGTTTCACCCAAATCGGGATCCGA
TTAAATCATTTTACCTTTATTTTGATTCCCGATTTGGAGAGAGGGGATCT
GATTATAAGTCCTAAAGATTCCACGGGTTCCAGAACTTTTAGCCAATCAA
CAAGAGAGTTCTTTGGATCTTGTGGTCTTATAATCAAATCGGGAAGTGAA
ATGGGGAACCGATTTCTTGGTTAAGACCGGCTCTTAGCACCGGTAAGCAG
TTACAACATTTTGGGAGGAAGTCGTTCGATTGTTTGTGCTGTACATCGCA
ATAACCTACGTGACAAATACATTGGGGTGACGGACCGCGGCATTCATTTT
TCGCTCGATGGGGCTAGTACTTTGTGCGTAGTCTATGTGTTGCGGCACCT
TTCGAAGACTGCCCACAAAGCGGGAGACGACTGTACAGCCTGTAAGCGTA
GTAATGCGATTCCATTTTACGCAGCATGTCTTCCGTCTACTTGTGATAGG
TCGTGGGGGACTCGGCCCTGCTGGAGCTGGCAAATGGGTGCGACTCATCT
CTAGTTCAGCTTAACCTCAGCAGCTGCTGTTTCATCACGGACGGTGCTCT
CCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGATCTCACCCTTTCGG
GGTGCCGCGGTATCACTGATGAGGTGCACTATGCGAGTAGTAAAGCTACA
TACCCGTGCCGCTGTTTGGTTTCACAAGAGTCGCATTGAGAACGTATCTG
AGTGAGCAAGTTTGTTCAGCATTATTTATCCATCTGTTGCATGCGTCGTG
TAGAAGGAGCCGAAACGTGCGGTACTCAAACCGTACCACGAAGCTGACCC
CTCTCCGCCTGCGCAGCTGTTCGGACGTTTGCTGAAGTGCCGCAGCAAGA
CCTGCTCAACAATTGCCAATTTTGTTTTTATGACACCAGCACTTCCTGCT
GTGCAACGGGAAAGGCATCATCATGTACCGCTGTATAGGTCGCGCTTCAC
ACAGGTCGGTAAAGTGGACTATTTACCCCGTGCACGCGAGTCACTTAGTA
AGATGCTCAGCATTAGCATCATCCTTTGGTCCGCGTTGTTGTTGTCTCCG
TCGTTTCGACTCAACTCGTACCGCAGACTGCTTACCATTTGCCGCACCGA
TGCACGAAGCTGACAACACTCAACCTGGCGGGACTCGAAGGGATAACCGG
AAGTGGCGTGGCCTACATTGCCTACCTCCCTGCCCTCGAGCAGCTTTGCC
TCGCGAGATGCAACGTGAGAGAGCGTTGTACAAATTTCTCTTGTCGTACC
GTACGTCGAATGGTGGAAGAACGACACGATAATGCAGCTTTTCGGCTACC
TCTCACGAAGAAGTAGGAGGAAGAGGAGGAATTGAGTGTTTTTCCGGGCG
GCGGGCGGACGGTCGGGGTAGGGAGGGGGGCGTGCGGCGACCTTGCCCGC
CGTCGCTTTCCTTGGAGTACTGTAGATCGTTTGCGCAACGGGCGCGTCTT
CCGTTATTTAGAGCACAAGGTTTCTACGCGTTTCGTGGCCTGCGATAAAA
CAAAACTACCTGTATGCATGTATGTGTCGTACAACACAGCAGTGACGGGA
GCATGAGTCGGGTATAGGCAAAACGTGTACACATGCCAGCTGGTGTCTCC
CAACACCCTTCGCCCCCTGCTCTCCGCCTTAGCTTTCTCGTGCTCTCTCC
CCACCCTCCCCACGTCGCACAGCAGGTCAGCGACGCCGCTGTGGTCGCGA
TCACGACCGGCGTGTGCCGGCAGTCCTTGAGGTGGCTGGACCTAACCGGC
ACGGCGATATCGGGCGCGGCAGGCACGGCGGCCGCGGCGTCCCTCCGAGG
CCTGCAGCGGCTGGAGTACCTCGCCCTGTCCTCGACGAGCGTGTCCGCCA
CGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTACCCGCCTTCCTCCCG
GAGGCGCCCAAGACGAAGGCACGGTCCAGCCGCGCGCTTCTGCTGGGATC
GAAGTGGTCTGAAACGCAGCTCCGTAGCCTGCCGAAAAAACGGGCGGCGA
CGACGGCGGCGACGGCGGCAGGGGTCACCGCCAAAACTTGGCGAAACAGC
AGTGCGTCGGTCATCTGCTACGAGCGTGACGGCCCGAGCAAGGCGATGCG
CCTAATCGGGGCGGCTAGTCGAGTGTCCTCTTCTTCCTCCTCTCCATGCG
CGGACGATCTTGTGGAGGTGGGCTTCCGAGACGACGGCATCGAAGAGGGG
GGACGGAAGCTGCTACTGAACCTGGTGCAAGGCATCGTGAGGTTGTGGCC
GGCGGTTCCCTCGCGCTGAACAAAAAGTGTTGTCTGTGACATAATTCGCG
AGAATATTGATCACTCGCGGTCGAAGTTTCAATCCGCCAGCCGGAGCTCG
AGCCCCCGGCCGGTAAGTTGCCCCTGTCGCCGTGCGGGTGACCCTGTGGT
CATGTTTGTTTTTGTGCGGTACGTGTATGATTATCTGGTGCCAGTACTCA
TGCATGGGTTTGTAGTTGTGCGACACGTCTGCTGTGGCGACGAGGATCGA
TAACGTGGTGGCCGCTTTCATATTTTCCTGCGTATTGTCGCGAGATAATT
CCATTGATGTTTACCTTTATACTTGGAGCCTGATGCGATATATGGGACAG
CGTCTTGACTGTACATAAGCTTTCGGGCTTTGCTTGCTGCAAACCTGTTA
ATACTGTTTGCCACACATGCCCTGGACAGCTCGCCGTGCCGTGGATTTAT
ACGGCGAAGACTTCTTCGGGTGTCGAGAGATCTTTTTCCACATGTATGTA
TGAGTCTTCGTCGGAGACCTACTGTAAGATTTAGTAGGCAGGAGACCGGA
TTAGTTGCTGCCTGAGGTTTGGAGAGTGCTTTCCACCAAAAAATGACCGT
GTACAAGTGGTACGTACAACGTTACGTCAATAGAGGAATGTGGAGTGAGA
TTTACGAGAGGTCAGCGTGGCACGAGACACACTTCGCGATGTTGGTTGAC
CGGGTCATGCATGTACAATATCTGAAGCGAGATTCCGTCGAAGAACGTGG
GTTTGCGGTGATGGCCGGTTTGGAACCGTAGGTGCCGGACATCTCATGTC
GCCGTCGGGTGTTTCCTGGCTGGTGACTTCGATAGTTCGCCTCGCGTACA
CGTAACACGCACTTGCCGTATTCCAGCTTCGAAGGACGTCGGAAGTCGGG
GCGGCACGCGGGATACAACCTTCACAGATAGGTTTTCCAAGCAGTACGGC
GGATGTGGTATGCATGCAAACGATGTTTTGTTGTGAAGGTTGTCGCGATT
TGGTGAAAAACGTGGTTTGTTTGCGTGCCTTCTTGTTTTTGTGTGTACAT
GCTCGGCTTCGGCGAAGGCCGGAACATGGTGGACGGATGTCTGTACCTGA
CTGTAAATATGATTTCTCTTGCGGTATATGGGTTCGGTCTCATCAACAAG
CCTCTGGTTTAGAAAGATGCAAGGTGTGGGAAGGTGTGGGGCGTTTATCG
GGAGACATGCATGTGTTTGCGTTGTGGTTTCAATCTGCGATCGGCACGTG
GCCAGCTAAGCTTAAGCTTCGACCGCGAAATACATGAGTTGAAACTGCGG
CCAAGGAAGAATTGCCCGTCATGGTCAACTATGTCACCTCGCCCGGCCAG
CTTCTTACCACAGCAGCTCTGTGTAGAGTAACCGTTAAGTCGGGAGAGCG
CCTTACGCATTCACCAAGGAAGGCGGCGACCAAGCACCAACTGATCGTGT
TCTTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1014:3774..8930-

>mRNA_Ecto-sp13_S_contig1014.166.1 ID=mRNA_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1014:3774..8930- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGG
CGGGTCTTTCGACTCACCGGCGCTACGAGTCAACATCGTCGACCGCCGAA
CTCGTCCCGCAAGCAGCGGCATCAGAGGCGAACGGGAGGTTGAGATCCCA
ACTTTAAGCATTCTTTGCCTCCGAAGCTTGGAGTCGTCCCTCGGCAAGGG
CCTCGCGACCTTCGACCTTCAGGACCTTCCCCTCGGGCTGGCCGAGACTA
TGTACGACTTCGTTGCCGCCGCCGGTTCGCGAATGGCCCACATGGAAATC
CTTCGAGCGCTCGCCCCAATTTTGCGGCAGCACGTAAACTCCCTCGACTT
GAGCAGAGCCAAGGTCGTGGGGGACTCGGCCCTGCTGGAGCTGGCAAATG
GGTGCGACTCATCTCTAGTTCAGCTTAACCTCAGCAGCTGCTGTTTCATC
ACGGACGGTGCTCTCCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGA
TCTCACCCTTTCGGGGTGCCGCGGTATCACTGATGAGACTGCTTACCATT
TGCCGCACCGATGCACGAAGCTGACAACACTCAACCTGGCGGGACTCGAA
GGGATAACCGGAAGTGGCGTGGCCTACATTGCCTACCTCCCTGCCCTCGA
GCAGCTTTGCCTCGCGAGATGCAACCAGGTCAGCGACGCCGCTGTGGTCG
CGATCACGACCGGCGTGTGCCGGCAGTCCTTGAGGTGGCTGGACCTAACC
GGCACGGCGATATCGGGCGCGGCAGGCACGGCGGCCGCGGCGTCCCTCCG
AGGCCTGCAGCGGCTGGAGTACCTCGCCCTGTCCTCGACGAGCGTGTCCG
CCACGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTACCCGCCTTCCTC
CCGGAGGCGCCCAAGACGAAGGCACGGTCCAGCCGCGCGCTTCTGCTGGG
ATCGAAGTGGTCTGAAACGCAGCTCCGTAGCCTGCCGAAAAAACGGGCGG
CGACGACGGCGGCGACGGCGGCAGGGGTCACCGCCAAAACTTGGCGAAAC
AGCAGTGCGTCGGTCATCTGCTACGAGCGTGACGGCCCGAGCAAGGCGAT
GCGCCTAATCGGGGCGGCTAGTCGAGTGTCCTCTTCTTCCTCCTCTCCAT
GCGCGGACGATCTTGTGGAGGTGGGCTTCCGAGACGACGGCATCGAAGAG
GGGGGACGGAAGCTGCTACTGAACCTGGTGCAAGGCATCGTGAGGTTGTG
GCCGGCGGTTCCCTCGCGCTGA
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