Homology
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI) HSP 1 Score: 625 bits (1613), Expect = 7.370e-223 Identity = 385/425 (90.59%), Postives = 394/425 (92.71%), Query Frame = 0 Query: 1 MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRG--EREVEIPTLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEILRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFLPEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRNSSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 423
MNFVRSNEWVSRRRARGGSFDSPA+RVNIVDRRT PASSG+R EREVEIPTL ILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVA+AGSRMAHMEILRALAPILRQHV+SLD SRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN VSDAAVVAITTGVCRQSLRWLDLT TAIS AA AASLR LQRLE VAALARDLRLPAFLPEAPKT+ARSSRALLLGSKWSETQLRSLPKKRAATTAATAAG AK+WRNS ASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct: 1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN-VSDAAVVAITTGVCRQSLRWLDLTCTAISAAA----AASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Analysis Date: 2022-09-16 ( Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FQD2_ECTSI | 7.370e-223 | 90.59 | Hypothetical leucine rich repeat protein n=1 Tax=E... | [more] |
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | LRR_CC_2 | coord: 214..238
e-value: 5.1
score: 16.1
coord: 162..187
e-value: 0.081
score: 22.0
coord: 136..161
e-value: 720.0
score: 0.0
coord: 109..134
e-value: 400.0
score: 2.0
coord: 188..213
e-value: 0.016
score: 24.4
coord: 269..293
e-value: 400.0
score: 2.0 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | | coord: 94..300
e-value: 3.2E-32
score: 113.5 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13516 | LRR_6 | coord: 137..154
e-value: 0.92
score: 9.7
coord: 188..211
e-value: 0.099
score: 12.8 |
| None | No IPR available | PANTHER | PTHR13382 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | coord: 112..293
coord: 70..196 |
| None | No IPR available | PANTHER | PTHR13382:SF4 | | coord: 112..293
coord: 70..196 |
| None | No IPR available | SUPERFAMILY | 52047 | RNI-like | coord: 110..279 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_Ecto-sp13_S_contig1014.166.1 ID=prot_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRGEREVEIP
TLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEI
LRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLT
GTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFL
PEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRN
SSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEE
GGRKLLLNLVQGIVRLWPAVPSR* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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