prot_Ecto-sp13_S_contig6003.16598.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6003.16598.1
Unique Nameprot_Ecto-sp13_S_contig6003.16598.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length260
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Match: A0A6H5JSQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ5_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 4.230e-118
Identity = 213/259 (82.24%), Postives = 219/259 (84.56%), Query Frame = 0 
Query:    1 MTFTAVSIVMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSTPSTVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGXXXXXXXXXXXXXXXXXXXXPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRHRAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEXXXXXXXXXXXXXXXXXXXXXXXRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 259
            MTFTAVSI+MSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANS PST AGGTPTGPARVF GS G+PK SPTGT A AP SG                    P SAV+FDDV  HAEPSQLPG PY+QRDLPAGPPEPGGGVD RHRA+QL S+QRSGALPAAYHRPWRQRARDARRQTVFENNPEE FEAE XXXXXXXXXXXXXXXXXXX    RKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP
Sbjct:    1 MTFTAVSIMMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSIPSTTAGGTPTGPARVFVGSDGNPKLSPTGTAAAAPPSGDADDAHRERQHN--------PTSAVFFDDVDGHAEPSQLPGSPYEQRDLPAGPPEPGGGVDQRHRAQQLVSSQRSGALPAAYHRPWRQRARDARRQTVFENNPEERFEAEXXXXXXXXXXXXXXXXXXXXLVASRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 251
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BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Match: D7FP65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP65_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 8.680e-102
Identity = 222/261 (85.06%), Postives = 227/261 (86.97%), Query Frame = 0 
Query:    1 MTFTAVSIVMSTLLASPRVEALVPSFGG--RGFNMVSALIPPHGRAANSTPSTVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGXXXXXXXXXXXXXXXXXXXXPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRHRAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEXXXXXXXXXXXXXXXXXXXXXXXRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 259
            MTFTAVSIVMSTLLASPRVEALVPSF G  RG +MVSALIP  GRAANS PST A GTPTGPARVFDGSRGHPKRSPTGT A      XXXXXXXXXXXXXXXXXXXX             A+PSQLPG  YDQRDL AGPPEPGGGVDHRHRA+QLES+QRSGALPAAYHRPWRQRARDARRQTVFENNPEEGF AEE XXXXXXXXXXXXXXXXXXXXXXR+DSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP
Sbjct:    1 MTFTAVSIVMSTLLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPSTTAAGTPTGPARVFDGSRGHPKRSPTGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGL-------AKPSQLPGSLYDQRDLSAGPPEPGGGVDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEEGXXXXXXXXXXXXXXXXXXXXXXRRDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSQ5_9PHAE4.230e-11882.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP65_ECTSI8.680e-10285.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 232..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..21
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 259..259
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..231
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.578
NoneNo IPR availableTMHMMTMhelixcoord: 236..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6003contigEcto-sp13_S_contig6003:4455..6006 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6003.16598.1mRNA_Ecto-sp13_S_contig6003.16598.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6003 3172..7348 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6003.16598.1 ID=prot_Ecto-sp13_S_contig6003.16598.1|Name=mRNA_Ecto-sp13_S_contig6003.16598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MTFTAVSIVMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSTPS
TVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGAAAAPPSGDADDAH
QEHHHHPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRH
RAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEGGG
GSLVGARRRRASEKEEVVASRKDSQQKAINRAALPIVDLVGLVSPLVLIA
GMTMVHIVP*
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