mRNA_Ecto-sp13_S_contig6003.16598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6003.16598.1
Unique NamemRNA_Ecto-sp13_S_contig6003.16598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Match: A0A6H5JSQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ5_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 4.330e-112
Identity = 213/259 (82.24%), Postives = 219/259 (84.56%), Query Frame = 3 
Query:  189 MTFTAVSIVMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSTPSTVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGXXXXXXXXXXXXXXXXXXXXPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRHRAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEXXXXXXXXXXXXXXXXXXXXXXXRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 965
            MTFTAVSI+MSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANS PST AGGTPTGPARVF GS G+PK SPTGT A AP SG                    P SAV+FDDV  HAEPSQLPG PY+QRDLPAGPPEPGGGVD RHRA+QL S+QRSGALPAAYHRPWRQRARDARRQTVFENNPEE FEAE XXXXXXXXXXXXXXXXXXX    RKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP
Sbjct:    1 MTFTAVSIMMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSIPSTTAGGTPTGPARVFVGSDGNPKLSPTGTAAAAPPSGDADDAHRERQHN--------PTSAVFFDDVDGHAEPSQLPGSPYEQRDLPAGPPEPGGGVDQRHRAQQLVSSQRSGALPAAYHRPWRQRARDARRQTVFENNPEERFEAEXXXXXXXXXXXXXXXXXXXXLVASRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 251
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BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Match: D7FP65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP65_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 3.750e-96
Identity = 222/261 (85.06%), Postives = 227/261 (86.97%), Query Frame = 3 
Query:  189 MTFTAVSIVMSTLLASPRVEALVPSFGG--RGFNMVSALIPPHGRAANSTPSTVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGXXXXXXXXXXXXXXXXXXXXPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRHRAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEXXXXXXXXXXXXXXXXXXXXXXXRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 965
            MTFTAVSIVMSTLLASPRVEALVPSF G  RG +MVSALIP  GRAANS PST A GTPTGPARVFDGSRGHPKRSPTGT A      XXXXXXXXXXXXXXXXXXXX             A+PSQLPG  YDQRDL AGPPEPGGGVDHRHRA+QLES+QRSGALPAAYHRPWRQRARDARRQTVFENNPEEGF AEE XXXXXXXXXXXXXXXXXXXXXXR+DSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP
Sbjct:    1 MTFTAVSIVMSTLLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPSTTAAGTPTGPARVFDGSRGHPKRSPTGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGL-------AKPSQLPGSLYDQRDLSAGPPEPGGGVDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEEGXXXXXXXXXXXXXXXXXXXXXXRRDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6003.16598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSQ5_9PHAE4.330e-11282.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP65_ECTSI3.750e-9685.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6003contigEcto-sp13_S_contig6003:3172..7348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2310
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000680.1
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463835.799121-UTR-Ecto-sp13_S_contig6003:3171..32771681463835.799121-UTR-Ecto-sp13_S_contig6003:3171..3277Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6003 3172..3277 +
1681463835.8106654-UTR-Ecto-sp13_S_contig6003:4372..44541681463835.8106654-UTR-Ecto-sp13_S_contig6003:4372..4454Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6003 4373..4454 +
1681463835.841244-UTR-Ecto-sp13_S_contig6003:6006..73481681463835.841244-UTR-Ecto-sp13_S_contig6003:6006..7348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6003 6007..7348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463835.8208804-CDS-Ecto-sp13_S_contig6003:4454..45421681463835.8208804-CDS-Ecto-sp13_S_contig6003:4454..4542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6003 4455..4542 +
1681463835.8311603-CDS-Ecto-sp13_S_contig6003:5314..60061681463835.8311603-CDS-Ecto-sp13_S_contig6003:5314..6006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6003 5315..6006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6003.16598.1prot_Ecto-sp13_S_contig6003.16598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6003 4455..6006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6003.16598.1

>prot_Ecto-sp13_S_contig6003.16598.1 ID=prot_Ecto-sp13_S_contig6003.16598.1|Name=mRNA_Ecto-sp13_S_contig6003.16598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MTFTAVSIVMSTLLASPRVEALVPSFGGRGFNMVSALIPPHGRAANSTPS
TVAGGTPTGPARVFDGSRGHPKRSPTGTTALAPSSGAAAAPPSGDADDAH
QEHHHHPASAVYFDDVGDHAEPSQLPGPPYDQRDLPAGPPEPGGGVDHRH
RAKQLESAQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFEAEEGGG
GSLVGARRRRASEKEEVVASRKDSQQKAINRAALPIVDLVGLVSPLVLIA
GMTMVHIVP*
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mRNA from alignment at Ecto-sp13_S_contig6003:3172..7348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6003.16598.1 ID=mRNA_Ecto-sp13_S_contig6003.16598.1|Name=mRNA_Ecto-sp13_S_contig6003.16598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6003:3172..7348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGACGGAATCACCGCTAGGCCTCGTACCTCTGGTGCCCTCTTCGAACC
TGGACCAGCTTACGAGAGGAAGAAAGAGGGACAGAAACAGGAAGCTACAG
CAGTAGGTGAGGTGTGTTTGTGCGCAGCAACGAACCGGCTGCGCTGATAA
TGTGGTGATCGTCTACAGCAGCAGGTGACACGTGAGACACGATTCGTTGG
TTGGCACACAGCAGGAAAAGCCAACCGGTCCCCCCCTCGCCCCAAAGCTG
CAGTAGCACGGATGCCCTAGAGTGTGGGAAGTTTACCGTCTTACCGCGCG
ATCACGTGTGTGTTGAGTCGAAGGGCCGGGGAGCACGGGGTAATATCACC
GTGCGTGTGGTACAGCAGGAACAACGTTTGTGGCATCAAACACAAATTGT
GTAATTGGATTTGAAGTCAAGGTCGGACCACAGCTCTGCTGCTACAGCTG
TGACCGGTGTTTAAGCCCTCGGCTGACGCTAGGATGGTAAACAGCTCATA
CACCTTGCGCCCTTGTCTACACGAAGGCAAGATTGGTTCCAGAAGTGCGG
GGCTGTGGAAGAAAGGAACCCATGACACCATATGACTGCCACACTTCCGA
CGAGACGACCGGCGTGTCATCATGATTCTCTGCGCACCCTGGAACGGCCT
CCAACCGCCATTCCCCCCCACGCCCCCCTACGTCACGGCCGCATGTGGCG
CTTGGCCCGACTTGCTCGTTGTGTTGATTCGAGATCACCCCTGTCCGACC
AAGCCCGCTGTTTACGTTGTACTTAATGAGTTCTTGTCTTCGCACTGTGG
CACTTCCTGGTACTGCTGCTCTCTACCGTAAGCTATGCATAGAGAACCCT
GGTTGGTTAGTCTTCAGCGGGGGATTGTCGTTCGTTGTCATCCGGTCCGT
TGGAAGAAATGTTTTTTTTACTTTCTTACCAACTACAACGAGTTATTTTC
TTTTTTCTGGTTATGGCGGAAGAACATAAAGCGGGGTTCGTCACAATCAC
TCGTTACGCACAACTTTCGTGAGTGAGCACATGGTTGGACACGGTGATGA
CACGAACGAAATAGTCATGCCCTACGCTCCCCCAACGCTCGTCACCCCCC
CCGTCGGTCGTTGCCGCAGATTTTCCTCCAGTATCACCACCAATGTCTCA
TGAAATCCCTCCCCCTTTTGCCTTGTGCTCGCCGCTCCATTTTATAACCA
GGACCTACACTCACAACACACAGACAAGGGCATCTCCGTTTCTCACAAGC
TCCGAGCGTGGCGAGCATCTCATCTCGGAGAAAATGACTTTCACGGCCGT
GTCCATTGTAATGTCGACTCTCCTTGCTTCTCCGAGGGTAGAGGCGCTTG
TGCCTTCATTCGGTGGTCGAGGTAAGCCTGAGTCTGGCAGTTTTCCCGTC
CTACCGTACAATTATGTGCATACAACGAAGACAGCAAATGTGAAGGAGTC
AACCGCTCACAAGAACACCAATGACCGGTCCGATGTAGATACCGTATCTA
CAATACTTCACCACTGGTAAGCATCCGTTCAGGTTTTGTTTTCCATGTTT
TCCTGCCGTTTTTCAAATGGGGTATACAAACGCTTGCAAGTGTCCGCTCC
CGATATTGTCTCCGGCAGCAGTTTGCTGATTTTCGGTGCTTGTTTGACCA
CACACCCCGCGCGGGCAGCCGCAACGCTTGCGGACAAACCTAACGGTATC
ATCATGGTCTTATTCTTTTCGCACCGACTGCTGTTTCTTTTTTTCTTTTT
CCTTTTGTCGGTTGGAAGAACGATGATGACGCACCCTCCTCAAGCCAGCA
GTATTCGACGCTACGGTTTATCTGTATTTTTTTAGATGGTAGATAGAAAC
TTTAAGTGATCGTTTTCACATTCGGTGTTGCCAACCAGGTCTGTGGACGG
AGGTACGGAGTCCATGACGTGTTCGCAGATACCAAGAAGATAGTGTATGT
CCTAAACATGATGAACTTTCGAGTCACCGTCTCCTATAAACAAAACCACA
GGAAGCGCCAGCTGAACGTTGGTGGTGCCACTGGCTGCACTTCAAAACAA
TGGTCTTCGAGTCGTTTCCATCGATCTCCCACCACATCCCGATCCCTTTT
TCGTGAACTCCTCGGTTTCAATACCCCCGCCGCAACGACGCAGGCTTCAA
CATGGTGAGCGCCTTGATCCCCCCGCACGGCAGGGCAGCTAACAGCACCC
CCTCCACCGTCGCCGGCGGCACGCCGACGGGCCCAGCCCGCGTCTTCGAC
GGTTCGCGCGGCCACCCGAAGCGTTCACCAACAGGAACGACTGCTCTTGC
CCCCTCCTCCGGGGCTGCTGCTGCCCCCCCCTCCGGGGATGCCGATGACG
CTCACCAAGAGCACCACCACCACCCCGCATCGGCGGTATATTTCGACGAC
GTCGGCGACCACGCCGAGCCCTCACAGCTTCCGGGGCCCCCGTACGACCA
GCGAGATCTACCCGCGGGGCCCCCGGAGCCCGGTGGCGGCGTCGACCACC
GTCACCGTGCCAAGCAGCTTGAGTCCGCCCAGCGCAGCGGCGCCTTGCCG
GCGGCCTACCACCGTCCTTGGCGGCAGCGCGCCCGCGACGCTAGACGCCA
GACAGTTTTCGAGAACAACCCGGAGGAGGGCTTTGAGGCCGAGGAGGGCG
GGGGGGGTAGCCTGGTGGGTGCTAGGAGGAGGCGGGCTTCGGAGAAGGAG
GAGGTTGTGGCTTCGCGGAAGGACTCCCAGCAGAAGGCCATCAACAGGGC
GGCGCTGCCCATCGTGGATCTCGTGGGCCTTGTCTCGCCGCTTGTTCTGA
TCGCGGGGATGACCATGGTGCACATCGTGCCGTGAAGTAAAAACTTGTTG
TGTTGAGTGCCTCAAAAAGCAGAGTGCTGGTTTGTCTTGGGCTTATGTTG
CTAAACAAGTGGTGGAGTCGATCGATGGCGTGTGATGACTGCATGTATGG
ATGGCACCCTGGGAAGTGGTTGTGGATTTGTGTCGATGTGTCAGTGCAGT
AGTGGTATTCTTGCGCGCAATTTTGACATGTGAAGCTAAAAAGGTGGGAT
AACAAACAGAGCTACCACCACCAAACGGCTACTATACCCTGGTGTAGCAT
CTCATCCTGGAGGTGACGTAGCGGTATTGGTACAGGCGGTACTGGTAGGG
TGGTGTTGGTCATCCATGGAACGAGACAAGGCGACACGTTTGTATGACGA
AAGAGCATGTCCGCGGGATACCCGCGGCGGTGTGGAACGTGCTCTTTCGC
TTTTATTTTTGGTGTGTTGTTGTGATGTCGCCCGTCCCTCGTGATTTTTT
TCGCAATTTTCTGAGTGCTATGTCGGGGTCCGTCTCCTGCGCTGTTTTAA
ACAAATTTTGTGTTTGTTGTAAGACTTTTATGTACTTGTAGTGGTATCCG
TCAACGATGTTTCATGTCGGGGGGGAGGGACAGATCGTCCGTGACGGAGG
CTAGCATTAGCGGGCGTTGGCAAAGATCATTCTATTTGACTTTGCATCGG
GTGATGAGTGGTTTGTAATACCTGTGGGCCAAAGTTGATGGCCCCAATTT
TGTTGATGGATATCGATTTTGAAAAATGTTGACGTTAGGGCCCCCCAAGG
ATATCTGAGGGTTTGGCTTTGCCTATGCTGTTCTCCCATACTAACTGTGA
GAAGGAAGACCCCATAAGGGTCTCTGGAGGCTTCGACGGCCGCAAATTGG
AGATTGACCGGAAAAAAACATGACAGGGAGGAAAAGGTGTGGAGTGTTTC
TGTGCAGCACGGGGTAGTTGCTGCGTCTTGTTTGTCTTGGCTTGTTTGCG
GCACTTACACGTCGGTGGGCACCAACGTGTGGATTGGGTGATGCGACTCC
GTGGGTGGAAGAGTGCCCTCTGATTTTTTCGTGCTGCTTTGATCATATGT
ATACAGCTGGTGGGTGGTTTTCGCGGGCTGACGTGGAGCCAAGGATGTGT
GTGTGTGCTGCGTTCGTTGCATATTTATTTGCTGTTCGGGTCGAGAGGCA
ATGCGAGCTCCTGGGCGTGTCTACCGAATTGCGTCGTGATCATGTTTCGA
TTTTTATTGTCCTTGTCCTTCTAGTCGACACACCACATGCTTCCTTGATC
TTGTGGTGTTTTTGATACTGCTGGCTCACTTTCTCCCGCCTTGGGTGGGG
GAAGAAGAGGCCACGTTGGTGACGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6003:3172..7348+

>mRNA_Ecto-sp13_S_contig6003.16598.1 ID=mRNA_Ecto-sp13_S_contig6003.16598.1|Name=mRNA_Ecto-sp13_S_contig6003.16598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6003:3172..7348+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTTTCACGGCCGTGTCCATTGTAATGTCGACTCTCCTTGCTTCTCC
GAGGGTAGAGGCGCTTGTGCCTTCATTCGGTGGTCGAGGCTTCAACATGG
TGAGCGCCTTGATCCCCCCGCACGGCAGGGCAGCTAACAGCACCCCCTCC
ACCGTCGCCGGCGGCACGCCGACGGGCCCAGCCCGCGTCTTCGACGGTTC
GCGCGGCCACCCGAAGCGTTCACCAACAGGAACGACTGCTCTTGCCCCCT
CCTCCGGGGCTGCTGCTGCCCCCCCCTCCGGGGATGCCGATGACGCTCAC
CAAGAGCACCACCACCACCCCGCATCGGCGGTATATTTCGACGACGTCGG
CGACCACGCCGAGCCCTCACAGCTTCCGGGGCCCCCGTACGACCAGCGAG
ATCTACCCGCGGGGCCCCCGGAGCCCGGTGGCGGCGTCGACCACCGTCAC
CGTGCCAAGCAGCTTGAGTCCGCCCAGCGCAGCGGCGCCTTGCCGGCGGC
CTACCACCGTCCTTGGCGGCAGCGCGCCCGCGACGCTAGACGCCAGACAG
TTTTCGAGAACAACCCGGAGGAGGGCTTTGAGGCCGAGGAGGGCGGGGGG
GGTAGCCTGGTGGGTGCTAGGAGGAGGCGGGCTTCGGAGAAGGAGGAGGT
TGTGGCTTCGCGGAAGGACTCCCAGCAGAAGGCCATCAACAGGGCGGCGC
TGCCCATCGTGGATCTCGTGGGCCTTGTCTCGCCGCTTGTTCTGATCGCG
GGGATGACCATGGTGCACATCGTGCCGTGA
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