mRNA_Ecto-sp13_S_contig6001.16596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI) HSP 1 Score: 382 bits (982), Expect = 7.660e-128 Identity = 204/211 (96.68%), Postives = 204/211 (96.68%), Query Frame = 1
Query: 61 MNLAMRGSPLSSGAIRRLARLPTPSLQSAPRLSTACGLTPTSASRLSVAASPIPSPFQHGSRRPASTTIGSSDSTTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
MNLAMRGSPLSSGAIRRLAR PTPSLQSAPR STACG TPTSASRLS AASP PSPFQHGSRRPASTTIGS DSTTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPD TLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR
Sbjct: 1 MNLAMRGSPLSSGAIRRLARAPTPSLQSAPRFSTACGFTPTSASRLSAAASPRPSPFQHGSRRPASTTIGSGDSTTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 211
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A6H5K3Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y3_9PHAE) HSP 1 Score: 210 bits (535), Expect = 4.700e-63 Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1
Query: 373 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMR 690
MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPD TLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMR
Sbjct: 1 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMR 106
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA) HSP 1 Score: 150 bits (378), Expect = 7.260e-39 Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = 1
Query: 280 STTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
ST+++ +A+G KR+LY GH P SP QR + + +A DPERADMVA LGE TG AL+Q++ ML DP+G E+LR RP ++E +VDL AL LP T GK+Y++FM N F+PD R PV++VDD DLAYVM R
Sbjct: 7 STSSSKSAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMAR 144
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A7M7T4E7_STRPU (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T4E7_STRPU) HSP 1 Score: 139 bits (350), Expect = 1.270e-34 Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 304 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
S P +LY H PT+P+Q+ + + +L DP R DMVA LGE TG +AL +L+R M DP GR+IL RP IN TVD+ LA+LPDDT GK Y +FMK+N S D R PV++VDDPDLAYV++R
Sbjct: 32 SAPNVDGLLYEHHTPTTPIQKMLLTAGSAFMSLYDPYRHDMVAVLGETTGSVALPRLHRLMKEDPVGRQILEERPRINSDTVDMKYLASLPDDTFGKLYHDFMKKNKISADTRDPVRFVDDPDLAYVLQR 161
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A485K2E7_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2E7_9STRA) HSP 1 Score: 137 bits (345), Expect = 7.750e-34 Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 229 FQHGSRRPASTTIGSSDSTTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
+H RR A T ++ STT+ A+G K VLY H PTSPLQ+ A+A + T DPER DM+A LG+VTG +AL Q++ M +DP GR+IL +P VD+ AL LP DT G +Y+ FM + F DGR+ VK+VDDP+LAYVM+R
Sbjct: 12 LRHPDRRAAVATATAALSTTS---AAGLPTKHVLYKAHVPTSPLQKIAVAVGSAFTVFTDPERGDMLAALGDVTGAVALRQMHLKMYSDPVGRQILAEKPRFRSHLVDIDALRLLPTDTFGFAYTQFMDAHGFEADGRADVKFVDDPELAYVMQR 163
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A813SSC9_9BILA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813SSC9_9BILA) HSP 1 Score: 134 bits (338), Expect = 2.790e-33 Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 328 LYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
LYS H PTS LQ++ +A + + ++ DP R DM++ GE TG LAL+ + + M+ DPEG +ILR RP+IN +TVDL L LP TLGK YSNF+ + +PD R PV ++DD DLAY+MRR
Sbjct: 4 LYSSHIPTSFLQKSLLAVGSGIMSISDPSRDDMISVFGETTGSLALKYIQQKMILDPEGEQILRDRPIINSSTVDLEQLKMLPAGTLGKEYSNFLSKYTLTPDARRPVNFIDDRDLAYIMRR 125
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A819M3J9_9BILA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819M3J9_9BILA) HSP 1 Score: 134 bits (337), Expect = 3.880e-33 Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1
Query: 328 LYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
LY+ H+PT+ +Q++ +A + +T+++DP R DM++ GE TG LAL+ + M DPEG +IL+ RPVIN TVDL L LP TLGK YSNF+ + N +PD R PV ++DD DLAY+MRR
Sbjct: 4 LYATHKPTNLIQKSILAVGSGITSILDPSRDDMISVFGETTGILALKYIQEKMTIDPEGDQILKKRPVINTTTVDLDYLKTLPTGTLGKEYSNFLAKYNLTPDARRPVSFIDDADLAYIMRR 125
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: D0NLX9_PHYIT (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLX9_PHYIT) HSP 1 Score: 134 bits (338), Expect = 5.090e-33 Identity = 62/125 (49.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 319 KRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
+R+ Y H PTSPLQ+ ++ + +T +PER DM+A LGEVTGR AL +++ M ADP G IL +PVI +D+ L ALP+D+ G+ Y+ FM + F DGRSPV++VDDP+LAYVM+R
Sbjct: 10 RRIQYDSHMPTSPLQKLVLSVTSALTVFANPERGDMLAALGEVTGRDALRRIHARMCADPVGARILAEKPVIRNDKIDMDYLRALPEDSFGRRYATFMDSHGFDADGRSPVRFVDDPELAYVMQR 134
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A662WU27_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WU27_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.550e-32 Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 319 KRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
+RV+Y H PT+PLQ+ ++ + VT +PER DM+A LGEVTGR AL Q++ M ADP G IL +PVI +D+ L ALP D+ G +Y+ FM + F DGRS V++VDDP+LAYVM+R
Sbjct: 2 RRVMYDSHMPTTPLQKLLLSVASAVTVFANPERGDMLAALGEVTGRDALRQIHARMCADPVGARILAEKPVIRNEQIDMPYLRALPSDSFGHAYATFMDSHGFDADGRSLVRFVDDPELAYVMQR 126
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Match: A0A7R8ZZ82_9CRUS (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8ZZ82_9CRUS) HSP 1 Score: 133 bits (335), Expect = 1.950e-32 Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 328 LYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDDTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRR 693
LY GH T+PLQ+ + +T+ AL P R DMVA GEVTG LAL ++R ML D EG++ILR +P +N TVDL AL +LP+ TLG++Y+ F+ N SPD R PV++VDDP+LAYVM+R
Sbjct: 42 LYPGHIRTTPLQKALLGVGSTLMALYSPARDDMVAVNGEVTGMLALPWMHRKMLEDAEGQQILREKPKLNSYTVDLDALRSLPEGTLGRAYTQFLDVNGVSPDTRLPVRFVDDPELAYVMQR 163 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6001.16596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6001.16596.1 >prot_Ecto-sp13_S_contig6001.16596.1 ID=prot_Ecto-sp13_S_contig6001.16596.1|Name=mRNA_Ecto-sp13_S_contig6001.16596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp MNLAMRGSPLSSGAIRRLARLPTPSLQSAPRLSTACGLTPTSASRLSVAAback to top mRNA from alignment at Ecto-sp13_S_contig6001:5612..8620+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6001.16596.1 ID=mRNA_Ecto-sp13_S_contig6001.16596.1|Name=mRNA_Ecto-sp13_S_contig6001.16596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3009bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6001:5612..8620+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6001:5612..8620+ >mRNA_Ecto-sp13_S_contig6001.16596.1 ID=mRNA_Ecto-sp13_S_contig6001.16596.1|Name=mRNA_Ecto-sp13_S_contig6001.16596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6001:5612..8620+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |