mRNA_Ecto-sp13_S_contig60008.16595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60008.16595.1
Unique NamemRNA_Ecto-sp13_S_contig60008.16595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.780e-15
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
            +VQLLTGRTHQIRGQLAAEGCPIYGD+LYGPAVRE
Sbjct:  446 EVQLLTGRTHQIRGQLAAEGCPIYGDNLYGPAVRE 480          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.000e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPA 96
            +VQLLTGRTHQIRGQLAAEGCPIYGD LYGPA
Sbjct:  450 EVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPA 481          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A1E7FYJ6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYJ6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.350e-8
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVR 102
            +++LLTGRTHQIRGQLAA GCPI GD LYG + R
Sbjct:  383 EIELLTGRTHQIRGQLAALGCPIIGDPLYGGSGR 416          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S0Y7Y0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7Y0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.690e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
            +++LLTGRTHQIRGQLAA GCPI GD LYG
Sbjct:   99 EIELLTGRTHQIRGQLAALGCPIVGDPLYG 128          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A448Z0B5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0B5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.670e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
            +++LLTGRTHQIRGQLAA GCPI GD LYG
Sbjct: 1233 EIELLTGRTHQIRGQLAALGCPIVGDALYG 1262          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S2SFS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFS9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.710e-8
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
            QVQLLTGR HQIR QLAA GCP+ GD LYG
Sbjct:   30 QVQLLTGRRHQIRAQLAAVGCPVVGDLLYG 59          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: B8LDC7_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDC7_THAPS)

HSP 1 Score: 55.1 bits (131), Expect = 8.780e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
            +V+LLTGRTHQIRGQLAAEG P+ GD  YG AV +
Sbjct:  526 EVELLTGRTHQIRGQLAAEGFPLVGDAQYGGAVPD 560          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: K0TC93_THAOC (PseudoU_synth_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC93_THAOC)

HSP 1 Score: 54.7 bits (130), Expect = 1.200e-7
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
            +++LLTGRTHQIRGQLAAEG P+ GD  YG AV +
Sbjct:  498 EIELLTGRTHQIRGQLAAEGFPLVGDVQYGGAVAQ 532          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A089LZ63_9BACL (Pseudouridine synthase n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A089LZ63_9BACL)

HSP 1 Score: 53.9 bits (128), Expect = 1.810e-7
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
            ++ LLTGR HQIR QLA  GCP+YGD  YGP+V +
Sbjct:  164 KINLLTGRPHQIRVQLAHAGCPLYGDQKYGPSVNK 198          
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S4AGN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGN3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-7
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1
Query:    1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLY 87
            +++LLTGRTHQIRGQLAA GCPI GD LY
Sbjct:  397 EIELLTGRTHQIRGQLAALGCPIVGDPLY 425          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA94_9PHAE7.780e-1594.29PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D7G4K2_ECTSI4.000e-1293.75Putative RNA pseudouridylate synthase n=1 Tax=Ecto... [more]
A0A1E7FYJ6_9STRA1.350e-873.53Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0Y7Y0_9STRA1.690e-880.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448Z0B5_9STRA4.670e-880.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2SFS9_9STRA8.710e-880.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8LDC7_THAPS8.780e-871.43Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0TC93_THAOC1.200e-768.57PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A089LZ63_9BACL1.810e-762.86Pseudouridine synthase n=2 Tax=Paenibacillus TaxID... [more]
A0A7S4AGN3_9STRA2.250e-779.31Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60008contigEcto-sp13_S_contig60008:46..150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463835.5363538-CDS-Ecto-sp13_S_contig60008:45..1501681463835.5363538-CDS-Ecto-sp13_S_contig60008:45..150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60008 46..150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60008.16595.1prot_Ecto-sp13_S_contig60008.16595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60008 46..150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60008.16595.1

>prot_Ecto-sp13_S_contig60008.16595.1 ID=prot_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE
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mRNA from alignment at Ecto-sp13_S_contig60008:46..150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60008.16595.1 ID=mRNA_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60008:46..150+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCAGCTGCTGACGGGAAGAACTCATCAGATCCGGGGACAGCTCGC GGCGGAGGGTTGCCCGATCTACGGAGATGACCTTTACGGACCAGCCGTGA GAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60008:46..150+

>mRNA_Ecto-sp13_S_contig60008.16595.1 ID=mRNA_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60008:46..150+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCAGCTGCTGACGGGAAGAACTCATCAGATCCGGGGACAGCTCGC
GGCGGAGGGTTGCCCGATCTACGGAGATGACCTTTACGGACCAGCCGTGA
GAGAG
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