mRNA_Ecto-sp13_S_contig60008.16595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.780e-15 Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
+VQLLTGRTHQIRGQLAAEGCPIYGD+LYGPAVRE
Sbjct: 446 EVQLLTGRTHQIRGQLAAEGCPIYGDNLYGPAVRE 480
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 4.000e-12 Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPA 96
+VQLLTGRTHQIRGQLAAEGCPIYGD LYGPA
Sbjct: 450 EVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPA 481
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A1E7FYJ6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYJ6_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.350e-8 Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVR 102
+++LLTGRTHQIRGQLAA GCPI GD LYG + R
Sbjct: 383 EIELLTGRTHQIRGQLAALGCPIIGDPLYGGSGR 416
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S0Y7Y0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7Y0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.690e-8 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
+++LLTGRTHQIRGQLAA GCPI GD LYG
Sbjct: 99 EIELLTGRTHQIRGQLAALGCPIVGDPLYG 128
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A448Z0B5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0B5_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.670e-8 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
+++LLTGRTHQIRGQLAA GCPI GD LYG
Sbjct: 1233 EIELLTGRTHQIRGQLAALGCPIVGDALYG 1262
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S2SFS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFS9_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 8.710e-8 Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYG 90
QVQLLTGR HQIR QLAA GCP+ GD LYG
Sbjct: 30 QVQLLTGRRHQIRAQLAAVGCPVVGDLLYG 59
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: B8LDC7_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDC7_THAPS) HSP 1 Score: 55.1 bits (131), Expect = 8.780e-8 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
+V+LLTGRTHQIRGQLAAEG P+ GD YG AV +
Sbjct: 526 EVELLTGRTHQIRGQLAAEGFPLVGDAQYGGAVPD 560
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: K0TC93_THAOC (PseudoU_synth_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC93_THAOC) HSP 1 Score: 54.7 bits (130), Expect = 1.200e-7 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
+++LLTGRTHQIRGQLAAEG P+ GD YG AV +
Sbjct: 498 EIELLTGRTHQIRGQLAAEGFPLVGDVQYGGAVAQ 532
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A089LZ63_9BACL (Pseudouridine synthase n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A089LZ63_9BACL) HSP 1 Score: 53.9 bits (128), Expect = 1.810e-7 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVRE 105
++ LLTGR HQIR QLA GCP+YGD YGP+V +
Sbjct: 164 KINLLTGRPHQIRVQLAHAGCPLYGDQKYGPSVNK 198
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Match: A0A7S4AGN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGN3_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.250e-7 Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1
Query: 1 QVQLLTGRTHQIRGQLAAEGCPIYGDDLY 87
+++LLTGRTHQIRGQLAA GCPI GD LY
Sbjct: 397 EIELLTGRTHQIRGQLAALGCPIVGDPLY 425 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60008.16595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig60008.16595.1 >prot_Ecto-sp13_S_contig60008.16595.1 ID=prot_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp QVQLLTGRTHQIRGQLAAEGCPIYGDDLYGPAVREback to top mRNA from alignment at Ecto-sp13_S_contig60008:46..150+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig60008.16595.1 ID=mRNA_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60008:46..150+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60008:46..150+ >mRNA_Ecto-sp13_S_contig60008.16595.1 ID=mRNA_Ecto-sp13_S_contig60008.16595.1|Name=mRNA_Ecto-sp13_S_contig60008.16595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60008:46..150+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |