mRNA_Ecto-sp13_S_contig59936.16572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59936.16572.1
Unique NamemRNA_Ecto-sp13_S_contig59936.16572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A6H5JX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX88_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.240e-48
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 255
            F PMSQVDFSDIIAGRPKEVGL+VLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR
Sbjct:   32 FSPMSQVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 116          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: D8LRW6_ECTSI (Ran-GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW6_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 9.290e-44
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 1
Query:   10 MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 255
            +++VDFSDIIAGRPKEVGL+VLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR
Sbjct:  214 VTEVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 295          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A835ZA71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA71_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.050e-24
Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 1
Query:   10 MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKE-LRALLMCNDGLSAAAMEAVR 255
            +++ D SD+IAGRP+++ L+VLAA+CGG+  R  L+ +DVS+NAMG  GV+ACR A+EG++E L AL MCNDGLSA+AMEAVR
Sbjct:   73 VTEADISDVIAGRPEDMALRVLAAICGGLAGRS-LSLIDVSDNAMGEKGVNACRAALEGQRETLSALRMCNDGLSASAMEAVR 154          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A5D6Y1C6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1C6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.650e-15
Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 252
            F P++ VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   + G+++LR +  CN+G+SAAA   +
Sbjct:   67 FEPLTSVDFADMIAGRPEDEALQVLATLCDALAGVKTLTRIDLSDNALGEKGVRACFGLLLGQEQLRHVYFCNNGISAAAAAVI 150          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A2D4CFZ3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFZ3_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 7.840e-15
Identity = 36/84 (42.86%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 252
            F  ++ VDF+D+IAGRP++  L+VLA +C  ++  + L  +D+S+NA+G  GV AC   + G++ELR +  CN+G+SAAA + +
Sbjct:   75 FETLTSVDFADMIAGRPEDEALQVLATLCDALQSIKTLLRIDLSDNALGEKGVRACFGLLLGQEELRHVYFCNNGISAAAAKVI 158          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: W2PQ73_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PQ73_PHYPN)

HSP 1 Score: 76.6 bits (187), Expect = 9.210e-15
Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
            F  ++ VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   ++ +++L+ +  CN+G+SAAA
Sbjct:   70 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 149          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: W2J3U5_PHYPR (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2J3U5_PHYPR)

HSP 1 Score: 76.6 bits (187), Expect = 2.720e-14
Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
            F  ++ VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   ++ +++L+ +  CN+G+SAAA
Sbjct:   87 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 166          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A6A3J101_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J101_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.730e-14
Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
            F  ++ VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   ++ +++L+ +  CN+G+SAAA
Sbjct:  524 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSSIKTLTRIDLSDNALGEKGVRACFGLLQNQEQLQHMYFCNNGISAAA 603          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A0W8DJV1_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJV1_PHYNI)

HSP 1 Score: 76.6 bits (187), Expect = 2.760e-14
Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
            F  ++ VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   ++ +++L+ +  CN+G+SAAA
Sbjct:  389 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 468          
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A3M6VE59_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE59_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.440e-14
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
            F  +  VDF+D+IAGRP++  L+VLA +C  +   + LT +D+S+NA+G  GV AC   ++ +++LR +  CN+G+SAAA
Sbjct:   69 FEELVSVDFADMIAGRPEDEALQVLATLCDALSAIKTLTRIDLSDNALGEKGVRACFGLLQNQEQLRHIYFCNNGISAAA 148          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX88_9PHAE4.240e-4897.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRW6_ECTSI9.290e-4495.12Ran-GTPase activating protein n=1 Tax=Ectocarpus s... [more]
A0A835ZA71_9STRA7.050e-2461.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6Y1C6_9STRA1.650e-1544.05Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CFZ3_PYTIN7.840e-1542.86Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
W2PQ73_PHYPN9.210e-1542.50Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2J3U5_PHYPR2.720e-1442.50Uncharacterized protein (Fragment) n=13 Tax=Phytop... [more]
A0A6A3J101_9STRA2.730e-1442.50Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A0W8DJV1_PHYNI2.760e-1442.50Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A3M6VE59_9STRA4.440e-1443.75Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59936contigEcto-sp13_S_contig59936:482..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D8LRW6
Model size282
KEGG koko:K02909,ko:K14319
KEGG Pathwayko03010,ko03013,map03010,map03013
KEGG ModuleM00178,M00427
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5238@1,KOG1909@2759
Cds size273
COG Functional cat.AT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.3806126-UTR-Ecto-sp13_S_contig59936:481..4901681463832.3806126-UTR-Ecto-sp13_S_contig59936:481..490Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59936 482..490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.3942833-CDS-Ecto-sp13_S_contig59936:490..7631681463832.3942833-CDS-Ecto-sp13_S_contig59936:490..763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59936 491..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59936.16572.1prot_Ecto-sp13_S_contig59936.16572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59936 491..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59936.16572.1

>prot_Ecto-sp13_S_contig59936.16572.1 ID=prot_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGV
DACRPAIEGKKELRALLMCNDGLSAAAMEAVRVRHREREG*
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mRNA from alignment at Ecto-sp13_S_contig59936:482..763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59936.16572.1 ID=mRNA_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59936:482..763+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTGCCTATGTCACAGGTCGATTTCAGCGACATCATCGCTGGGAGGCC CAAGGAGGTGGGACTGAAGGTGCTAGCCGCCGTTTGCGGGGGTGTGAGGG AGCGCGAGGGACTGACGTTCGTGGACGTGAGCGAGAACGCCATGGGTCCG GACGGGGTGGATGCATGCCGGCCGGCGATCGAAGGGAAGAAGGAGCTCAG GGCCCTGCTCATGTGCAACGACGGGCTGTCGGCGGCTGCGATGGAGGCTG TTCGGGTGAGACACAGAGAGAGGGAGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59936:482..763+

>mRNA_Ecto-sp13_S_contig59936.16572.1 ID=mRNA_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59936:482..763+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCACAGGTCGATTTCAGCGACATCATCGCTGGGAGGCCCAAGGAGGT
GGGACTGAAGGTGCTAGCCGCCGTTTGCGGGGGTGTGAGGGAGCGCGAGG
GACTGACGTTCGTGGACGTGAGCGAGAACGCCATGGGTCCGGACGGGGTG
GATGCATGCCGGCCGGCGATCGAAGGGAAGAAGGAGCTCAGGGCCCTGCT
CATGTGCAACGACGGGCTGTCGGCGGCTGCGATGGAGGCTGTTCGGGTGA
GACACAGAGAGAGGGAGGGGTAG
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