mRNA_Ecto-sp13_S_contig59936.16572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A6H5JX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX88_9PHAE) HSP 1 Score: 166 bits (421), Expect = 4.240e-48 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 255
F PMSQVDFSDIIAGRPKEVGL+VLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR
Sbjct: 32 FSPMSQVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 116
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: D8LRW6_ECTSI (Ran-GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW6_ECTSI) HSP 1 Score: 158 bits (400), Expect = 9.290e-44 Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 1
Query: 10 MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 255
+++VDFSDIIAGRPKEVGL+VLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR
Sbjct: 214 VTEVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAVR 295
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A835ZA71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA71_9STRA) HSP 1 Score: 103 bits (256), Expect = 7.050e-24 Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 10 MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKE-LRALLMCNDGLSAAAMEAVR 255
+++ D SD+IAGRP+++ L+VLAA+CGG+ R L+ +DVS+NAMG GV+ACR A+EG++E L AL MCNDGLSA+AMEAVR
Sbjct: 73 VTEADISDVIAGRPEDMALRVLAAICGGLAGRS-LSLIDVSDNAMGEKGVNACRAALEGQRETLSALRMCNDGLSASAMEAVR 154
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A5D6Y1C6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1C6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.650e-15 Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 252
F P++ VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC + G+++LR + CN+G+SAAA +
Sbjct: 67 FEPLTSVDFADMIAGRPEDEALQVLATLCDALAGVKTLTRIDLSDNALGEKGVRACFGLLLGQEQLRHVYFCNNGISAAAAAVI 150
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A2D4CFZ3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFZ3_PYTIN) HSP 1 Score: 78.2 bits (191), Expect = 7.840e-15 Identity = 36/84 (42.86%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 252
F ++ VDF+D+IAGRP++ L+VLA +C ++ + L +D+S+NA+G GV AC + G++ELR + CN+G+SAAA + +
Sbjct: 75 FETLTSVDFADMIAGRPEDEALQVLATLCDALQSIKTLLRIDLSDNALGEKGVRACFGLLLGQEELRHVYFCNNGISAAAAKVI 158
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: W2PQ73_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PQ73_PHYPN) HSP 1 Score: 76.6 bits (187), Expect = 9.210e-15 Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
F ++ VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC ++ +++L+ + CN+G+SAAA
Sbjct: 70 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 149
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: W2J3U5_PHYPR (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2J3U5_PHYPR) HSP 1 Score: 76.6 bits (187), Expect = 2.720e-14 Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
F ++ VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC ++ +++L+ + CN+G+SAAA
Sbjct: 87 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 166
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A6A3J101_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J101_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.730e-14 Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
F ++ VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC ++ +++L+ + CN+G+SAAA
Sbjct: 524 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSSIKTLTRIDLSDNALGEKGVRACFGLLQNQEQLQHMYFCNNGISAAA 603
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A0W8DJV1_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJV1_PHYNI) HSP 1 Score: 76.6 bits (187), Expect = 2.760e-14 Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
F ++ VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC ++ +++L+ + CN+G+SAAA
Sbjct: 389 FAQLTSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAA 468
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Match: A0A3M6VE59_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE59_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.440e-14 Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 1 FLPMSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAA 240
F + VDF+D+IAGRP++ L+VLA +C + + LT +D+S+NA+G GV AC ++ +++LR + CN+G+SAAA
Sbjct: 69 FEELVSVDFADMIAGRPEDEALQVLATLCDALSAIKTLTRIDLSDNALGEKGVRACFGLLQNQEQLRHIYFCNNGISAAA 148 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59936.16572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59936.16572.1 >prot_Ecto-sp13_S_contig59936.16572.1 ID=prot_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp MSQVDFSDIIAGRPKEVGLKVLAAVCGGVREREGLTFVDVSENAMGPDGVback to top mRNA from alignment at Ecto-sp13_S_contig59936:482..763+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59936.16572.1 ID=mRNA_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59936:482..763+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59936:482..763+ >mRNA_Ecto-sp13_S_contig59936.16572.1 ID=mRNA_Ecto-sp13_S_contig59936.16572.1|Name=mRNA_Ecto-sp13_S_contig59936.16572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59936:482..763+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |