mRNA_Ecto-sp13_S_contig599.16565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 1.080e-145 Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 1
Query: 1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ KGQVCKITRPSETAGRYVTYRLCI
Sbjct: 1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ-KGQVCKITRPSETAGRYVTYRLCI 212
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA) HSP 1 Score: 283 bits (724), Expect = 2.420e-94 Identity = 139/211 (65.88%), Postives = 178/211 (84.36%), Query Frame = 1
Query: 19 RLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVS----MTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
+LS EG K++RIR+TC+KML KRGYNV EH+S ++ F++Q+G P+R +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL++E+KAELLKRYKL DTQLPRI STDPVAR++G+Q +GQV KI RPSETAGRYVTYRLC+
Sbjct: 4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQ-RGQVVKIIRPSETAGRYVTYRLCM 213
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH) HSP 1 Score: 236 bits (601), Expect = 1.130e-75 Identity = 120/206 (58.25%), Postives = 161/206 (78.16%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
L+ E K++R+R+TC+KML KRGY V + + M+++ F ++G P+R LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M V RAIIV+K +TPFAR+A++E+ + R +VE F+DAEL++DITEH LVPEH VL+ +QK ELL+RY+LK +QLPRIQ DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct: 8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA) HSP 1 Score: 236 bits (601), Expect = 2.030e-75 Identity = 121/206 (58.74%), Postives = 160/206 (77.67%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
L+ E ++YR+ +T MLEKRGY V +E +M+++AF Q++G +P R LT+LVEK DD +Q+FVFFP DEKVGVKPI+ ++KM EE V AI+V++ IT FA+ A+QE+ ++E FK+AEL++DITEH LVPEHQVLS +K ELLKRY+LK+TQLPRIQ DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct: 27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 229
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA) HSP 1 Score: 234 bits (598), Expect = 2.640e-75 Identity = 115/203 (56.65%), Postives = 158/203 (77.83%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
L+ E K++R+R+T +KML RGY V +E + T E F+ Q+G P R +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y +M +E V +AI++++ GITPFA+ A+ E+ + +++ FK+ EL++DITEHTLVP H+VL+ E+K LLKRYKLKDTQLPR+Q++DP+AR++GM +GQV KI RPSETAGRYVTYR
Sbjct: 3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMS-RGQVVKIIRPSETAGRYVTYR 202
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD) HSP 1 Score: 232 bits (592), Expect = 2.220e-74 Identity = 114/203 (56.16%), Postives = 158/203 (77.83%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
L+ E ++YR+R+T +KML RGY V + + MT E+F Q+G P R +T+LVEK+DDP D +FVFFP+D KVGVKPIR++ +M +E V +AI+V++ GITPFAR A+ E+ + ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR++G+ +GQV KI RPSETAGRYVTYR
Sbjct: 4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYR 203
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA) HSP 1 Score: 233 bits (593), Expect = 3.330e-74 Identity = 120/210 (57.14%), Postives = 161/210 (76.67%), Query Frame = 1
Query: 10 SGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
SG L+ E +++R+ +T ML KRGY V ++ M+ F++++ P R LT+LVEK DD +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++ ITP AR A+QEL ++E FK++EL++DITEHTLVPEHQVLS+ +K ELLKRY+LKDTQLPRIQ DPVARF+GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct: 23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMK-RGQVVKIIRPSETAGRYVTYRVCL 229
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC) HSP 1 Score: 230 bits (587), Expect = 1.360e-73 Identity = 113/203 (55.67%), Postives = 156/203 (76.85%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
L+ E ++YR+R+T +KML RGY V + + T++ F Q+G P R +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y +M +E V +AI++++ GITPFA+ A+ E+ + +++ FK+ EL++DITEHTLVP H+VL+ E+K LLKRYKLKD+QLPR+Q +DP+AR++GM +GQV KI RPSETAGRYVTYR
Sbjct: 6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMT-RGQVVKIIRPSETAGRYVTYR 205
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA) HSP 1 Score: 236 bits (601), Expect = 3.760e-73 Identity = 117/206 (56.80%), Postives = 160/206 (77.67%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
L+ E +++R+R+T +KML RGY V + + MT E+F QQ+G P R +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y +M +E V +AI+V++ GITPFAR A+ E+ + ++E FK+ EL++DITEHTLVP H+VLS ++KA LLKRY++KD+QLPR+Q TDP+AR++G+ +GQV KI RPSETAGRYVTYR I
Sbjct: 4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYRAVI 206
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S3V5Q1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Q1_9STRA) HSP 1 Score: 231 bits (588), Expect = 4.000e-73 Identity = 117/206 (56.80%), Postives = 159/206 (77.18%), Query Frame = 1
Query: 22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
L+ + +++R+ +T ML KRGY V ++ MT F Q++G P+R LT+LVEK DD DQ+FVFFP+DEKVGVKPI+ Y+++M +E V +I+V++ IT +A+ A+QE+ ++E FK+AEL++DITEHTLVPEHQVLS +KAELLKRY+LK+TQLPRIQ DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct: 50 LTPDASRLFRVYKTVSAMLNKRGYMVPRDMREMTPALFTQKFGEHPSREALTILVEKADDETDQLFVFFPEDEKVGVKPIKVYTDRMKDEAVTNSILVLRVDITGYAKQAVQEM--SDSCRIEHFKEAELLVDITEHTLVPEHQVLSPNEKAELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 252 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig599.16565.1 >prot_Ecto-sp13_S_contig599.16565.1 ID=prot_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGback to top mRNA from alignment at Ecto-sp13_S_contig599:7231..10493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig599.16565.1 ID=mRNA_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:7231..10493- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig599:7231..10493- >mRNA_Ecto-sp13_S_contig599.16565.1 ID=mRNA_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:7231..10493- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |