mRNA_Ecto-sp13_S_contig599.16565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig599.16565.1
Unique NamemRNA_Ecto-sp13_S_contig599.16565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 1.080e-145
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 1
Query:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ KGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ-KGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.420e-94
Identity = 139/211 (65.88%), Postives = 178/211 (84.36%), Query Frame = 1
Query:   19 RLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVS----MTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            +LS EG K++RIR+TC+KML KRGYNV  EH+S      ++ F++Q+G  P+R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL++E+KAELLKRYKL DTQLPRI STDPVAR++G+Q +GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQ-RGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 236 bits (601), Expect = 1.130e-75
Identity = 120/206 (58.25%), Postives = 161/206 (78.16%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            L+ E  K++R+R+TC+KML KRGY V +  + M+++ F  ++G  P+R  LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M    V RAIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VL+ +QK ELL+RY+LK +QLPRIQ  DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.030e-75
Identity = 121/206 (58.74%), Postives = 160/206 (77.67%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            L+ E  ++YR+ +T   MLEKRGY V +E  +M+++AF Q++G +P R  LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVLS  +K ELLKRY+LK+TQLPRIQ  DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 229          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.640e-75
Identity = 115/203 (56.65%), Postives = 158/203 (77.83%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
            L+ E  K++R+R+T +KML  RGY V +E +  T E F+ Q+G  P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VL+ E+K  LLKRYKLKDTQLPR+Q++DP+AR++GM  +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMS-RGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 232 bits (592), Expect = 2.220e-74
Identity = 114/203 (56.16%), Postives = 158/203 (77.83%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
            L+ E  ++YR+R+T +KML  RGY V +  + MT E+F  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR++G+  +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.330e-74
Identity = 120/210 (57.14%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   10 SGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            SG  L+ E  +++R+ +T   ML KRGY V ++   M+   F++++   P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVLS+ +K ELLKRY+LKDTQLPRIQ  DPVARF+GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMK-RGQVVKIIRPSETAGRYVTYRVCL 229          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 230 bits (587), Expect = 1.360e-73
Identity = 113/203 (55.67%), Postives = 156/203 (76.85%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 630
            L+ E  ++YR+R+T +KML  RGY V  + +  T++ F  Q+G  P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VL+ E+K  LLKRYKLKD+QLPR+Q +DP+AR++GM  +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMT-RGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.760e-73
Identity = 117/206 (56.80%), Postives = 160/206 (77.67%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            L+ E  +++R+R+T +KML  RGY V +  + MT E+F QQ+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VLS ++KA LLKRY++KD+QLPR+Q TDP+AR++G+  +GQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S3V5Q1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Q1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 4.000e-73
Identity = 117/206 (56.80%), Postives = 159/206 (77.18%), Query Frame = 1
Query:   22 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 639
            L+ +  +++R+ +T   ML KRGY V ++   MT   F Q++G  P+R  LT+LVEK DD  DQ+FVFFP+DEKVGVKPI+ Y+++M +E V  +I+V++  IT +A+ A+QE+      ++E FK+AEL++DITEHTLVPEHQVLS  +KAELLKRY+LK+TQLPRIQ  DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   50 LTPDASRLFRVYKTVSAMLNKRGYMVPRDMREMTPALFTQKFGEHPSREALTILVEKADDETDQLFVFFPEDEKVGVKPIKVYTDRMKDEAVTNSILVLRVDITGYAKQAVQEM--SDSCRIEHFKEAELLVDITEHTLVPEHQVLSPNEKAELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI1.080e-14599.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA2.420e-9465.88RNA polymerase Rpb5, C-terminal domain-containing ... [more]
A0A482UUV9_9ARCH1.130e-7558.25DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
A0A6S9BLJ2_9STRA2.030e-7558.74Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
W4GMP1_9STRA2.640e-7556.65Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WP89_GLOUD2.220e-7456.16Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A7S2KP14_9STRA3.330e-7457.14Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A067CT03_SAPPC1.360e-7355.67Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A5D6XUM4_9STRA3.760e-7356.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3V5Q1_9STRA4.000e-7356.80Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig599contigEcto-sp13_S_contig599:7231..10493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score419.9
Seed ortholog evalue7.4e-115
Seed eggNOG ortholog2880.D7G1Y9
Preferred nameRPB5
Model size642
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG2012@1,KOG3218@2759
Ec32 ortholog descriptionRNA polymerase, subunit H/Rpb5 C-terminal
Ec32 orthologEc-07_003640.1
Cds size642
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.667948-CDS-Ecto-sp13_S_contig599:7230..73081681463831.667948-CDS-Ecto-sp13_S_contig599:7230..7308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 7231..7308 -
1681463831.6822288-CDS-Ecto-sp13_S_contig599:8058..81691681463831.6822288-CDS-Ecto-sp13_S_contig599:8058..8169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 8059..8169 -
1681463831.6918147-CDS-Ecto-sp13_S_contig599:8987..90621681463831.6918147-CDS-Ecto-sp13_S_contig599:8987..9062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 8988..9062 -
1681463831.7042456-CDS-Ecto-sp13_S_contig599:9316..95021681463831.7042456-CDS-Ecto-sp13_S_contig599:9316..9502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 9317..9502 -
1681463831.715084-CDS-Ecto-sp13_S_contig599:10301..104931681463831.715084-CDS-Ecto-sp13_S_contig599:10301..10493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 10302..10493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig599.16565.1prot_Ecto-sp13_S_contig599.16565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig599 7231..10493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig599.16565.1

>prot_Ecto-sp13_S_contig599.16565.1 ID=prot_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYG
PEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVK
RAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPS
ETAGRYVTYRLCI*
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mRNA from alignment at Ecto-sp13_S_contig599:7231..10493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig599.16565.1 ID=mRNA_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:7231..10493- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGCTCGGGGCCGCGGCTATCCGATGAGGGGCACAAGATCTACCG GATTCGGCAGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGC TGCAGGAGCACGTCTCCATGACGTCGGAGGCGTTCTTGCAGCAGTACGGG CCCGAGCCTAACAGACACGACTTGACGCTGCTGGTAGAAAAGGTAGGAGG AGGGCCGTCGGTACGAGGATTGTGTGCTGGCAGCCACGGAACAGATTTTC CGTAGCTTTGGGTTTCTTTTCCCTAGTGATTTTAGTATGCCTTTCATCTA CGACTGTCGCCGAGCCTACTGTATGTGGCTAACACTAGCGTGTCTCAGCT GTGAGTAGTCTTGGTACGGACATATTTTGTGTTGAGGGGGTGATGAGGGT GATCGTTGTCTGTCGTAGCCTGCCCCTCAGATAGTAGGGAGGTCGCCGCC GCGTGGTAGAGTTGGGTCCGTTCGTTTTTGTGCTTCGAGCTCGTTGACGC AACCAGCATTTCCTGCAGCTGGTTATGAATGTGGTGCTTCCACTCTGTCC CACGGACGTCCTTGGCAAAAACCATGCTGCCAGTGGTGTTGTGGGACAGA ACTCTGCCTTCCCTTCAAGCCGTGGACGCTCGCTGACTCGGCTTGCGAAG CGGAACAACCCTTTCCAACCTACTGGTACTCAATACGTTTGATCAATGTG GACACGGCGTTTTGCGTGATTAAATGCCTCCCGAGTTTCTCAACCGGTTT GACTGAGATTTTAAAAAAACATCGCCTGCGACTGCCGTGGCCGGCCTGAG GACTGGACCTGCGTCTCCTTCGCCGAATGAAGAAAGAATACGGAAATTGT GTAGAATCGTGGTTTGACTGCTTCGCTACGACGCACTCTCTGCTGTTTGT ATCGCCCTTGCTTCTTTGGTACATCTATCTGGTGGTGGTGGTGGTGCCGA TGCTGCTGCTGCTGCGGCGGCCGCCTCTACTGCTGCTGTAGGTAGACGAC CCGATGGACCAGATCTTCGTCTTCTTCCCCGACGACGAGAAGGTGGGTGT GAAGCCTATCAGAAGCTACTCGGAGAAGATGCTGGAAGAGGAGGTCAAGA GGGCCATCATCGTCATCAAGGGCGGCATTACTCCGTTCGCTAGGTCTGCC ATTCAAGAGCTCTGCGCCCAGCGAGAGGTGCGCTGTTTATACCTAATCGC ATAGAACTGCGCACACGCACACGTGCACGCCTACTTTTGGAATGCGTTAG CGAAGTCTTCGTCCAGCGAGACTTCTGGTGAACACAACCGCTATAGTATT TTTACTGTGTGACTCTACGGACAAACTGACGCTATTACAACAACGTCAAG GGCGACGATATCCGCAGCAGCAGTAGCAGTAGCAACAACCACGGCAACAG CAACAGCAACCTCTTCCTGTCTCGTCCGCAGGTCCAGGTAGAGGACTTCA AGGACGCGGAGCTCATGCTGGACATCACGGAGCACACGCTTGTGCCGGAG CACCAGGTGAGAGAAGAAAGGACGATGTGTTGTCCAATTGTGGGACTGCT CTTTTTGCTTGGACGAAAGTCTCTGGGACGGATGCTGAGCTTTGCAGGGT CGTAAAGCTTGGCCGCGGCTGCCATCGCCTCGATACCCACCGGTGTTGCC CAACCCGTCACAGGGTTTCCCATGCAGTCTGGCGTTGCTCTGGAGGCAAA AAAAAACGCTCATGCTGTGTTCGTGGTGCAGTTTATTTCATGAACACAGC AAGCCTCCGTCAACAAGGCAGTCGTGTGCAAATGCAAGACTCTTGAGTAC TTCTTCGACGTAGATGGGAATATCCAGGACGAACCCCGGGCCAAAGCACC AAACGGATAGAGAAAAGAGATGAAACCGTCGGTGGCAGCAGATCGCGTTG CGAGTAGCGCGGCCGAGGTTGACCTCGCTATCCAAAGCATGTAGCTATGC TCATGAATATTGTTCCCTCTCCCCAGTGATTCGGGTCGAATCGATTCGAT CGGATTTCAACCCGTGGGCTCTTCTCCGGCCGATAGGGAGACAACTTTTT TTGTCGTCGTAGGTCTCCAAAAATGTGGTCGCCTTTATAACTAGCTTCGG CAGCATTCTTCATTGAAGAGGTGTAAGAGCGACAAAATATTCGAAGCAGT ACGCTTGAAACGAAAAATGGAAAAGAAGAACGTCAACCCACACCGATACC CTCCACCGCACCTTCACGAGCAACTCCGCGGCATGGAGTACACAATTGCC TGTGCTTTTATTCATGGGGTACGTATGTGTGTTAATGGTAAAGTATCCCC TGTTCCTTGTCAAAACCGTTGCAGGTGCTCTCATCGGAACAAAAGGCAGA GCTGCTGAAGCGATACAAGCTGAAGGACACCCAGCTGCCCCGGATACAGT CGACAGACCCGGTCGCGAGATTCTTCGGAATGCAGGTAAAGATGTGTACC GGTATCGCAGGATTGCAGGCGCACACGCCTGCGCGTTTTTTCCTGTTTGC TTATTTTCCTCCTCTTCGCCCATGGCGCGATTGGTGCTCGGGGTGGAAAG CCACCACGGCGTCGTACCTCTTTGAACCTGAATTTCCCTGCTTGCTGCGT GTGTACGTTATTTTCTTTTTCGATGTGATCTAACAAGTAAATGGCAAAAA AAGAAAACATGGGAAACTTTTTGCACCAAGCTTCGAAATGGTACGAGGAG ATCGCCATCCCCCCTTGAGCGTGCTGGATCTCTTGGAACGACCCCAATTG CTACCCTGTGTGAGCATAACAGCATGCCGAAGGTTGGAGTCGTCGTGCTC TGATTTTTTCAAAAGCGGACTGAAACCCCTCCTTGTTAGGGCCCATAGGC ACACACGAATTAGGGCATTTCGCTTCTTCTGCTGCTTCTACTAGTCTGCC GCCTCCGCCCCCCCCCCCTTCCGGGACTCTGCTAGTTGTACTAATCTACC GCTCCCCCCCCCCCCCCCCTCCCGGGACCTTGCGTGTTTTGTTAATCCCC CGCCCCCCCCCCCCCCCCCCGCTTCCGGCCCTCCGGACGCCCGCTGTCGC ATGTTGTCTTCGTCTTGTTTCGCGGCCTTCTGTTGGGGGTATACTTGCTT ATCGATTTCGTGTTGTTCGGATTGGCTCGTGTTGTTGCTGTTCGTCTGTG TGACGGATGACACTGGCCTCGCTGTTGGGTTCGAGCAGAAAGGGCAAGTG TGCAAGATTACACGACCTAGCGAGACGGCAGGGCGATACGTGACCTACCG CCTCTGCATTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig599:7231..10493-

>mRNA_Ecto-sp13_S_contig599.16565.1 ID=mRNA_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:7231..10493- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGCTCGGGGCCGCGGCTATCCGATGAGGGGCACAAGATCTACCG
GATTCGGCAGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGC
TGCAGGAGCACGTCTCCATGACGTCGGAGGCGTTCTTGCAGCAGTACGGG
CCCGAGCCTAACAGACACGACTTGACGCTGCTGGTAGAAAAGGTAGACGA
CCCGATGGACCAGATCTTCGTCTTCTTCCCCGACGACGAGAAGGTGGGTG
TGAAGCCTATCAGAAGCTACTCGGAGAAGATGCTGGAAGAGGAGGTCAAG
AGGGCCATCATCGTCATCAAGGGCGGCATTACTCCGTTCGCTAGGTCTGC
CATTCAAGAGCTCTGCGCCCAGCGAGAGGTCCAGGTAGAGGACTTCAAGG
ACGCGGAGCTCATGCTGGACATCACGGAGCACACGCTTGTGCCGGAGCAC
CAGGTGCTCTCATCGGAACAAAAGGCAGAGCTGCTGAAGCGATACAAGCT
GAAGGACACCCAGCTGCCCCGGATACAGTCGACAGACCCGGTCGCGAGAT
TCTTCGGAATGCAGCAGAAAGGGCAAGTGTGCAAGATTACACGACCTAGC
GAGACGGCAGGGCGATACGTGACCTACCGCCTCTGCATTTAG
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