mRNA_Ecto-sp13_S_contig59566.16514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5K9V8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V8_9PHAE) HSP 1 Score: 280 bits (715), Expect = 3.170e-92 Identity = 167/211 (79.15%), Postives = 170/211 (80.57%), Query Frame = 1
Query: 52 EAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
+AMETLDAVYKPETQGEAQQLFHRFERYQVDV VDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAKENLSSA KLTRG+LM VTGTRYN LCSQREAE+SHTRAAEQAF ADGAGK XXXXXXXXXXXXXXXX GAEKRA VRCFRCGK GHRIAEC TKE D EKAVIA
Sbjct: 18 DAMETLDAVYKPETQGEAQQLFHRFERYQVDVMVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSSAEKLTRGDLMRVTGTRYNTLCSQREAEKSHTRAAEQAFFTADGAGKDESRNRXXXXXXXXXXXXXXXXXXXGAEKRACVRCFRCGKRGHRIAECPTKERDXXXXXXXXXXXXXXXXXXXXXEKAVIA 228
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JXF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF6_9PHAE) HSP 1 Score: 243 bits (621), Expect = 3.040e-76 Identity = 151/188 (80.32%), Postives = 156/188 (82.98%), Query Frame = 1
Query: 112 LFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKA 675
+FHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAK NLSSA +LTRGNLM VTGTRYN LCSQREAE+SHTRA EQAF+ ADGAG XXXXXXXXXXXXXXXXXXXXXX EKRARVRCFRCGKMGHRIAEC TKE DI+ EEEKA
Sbjct: 99 VFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKVNLSSAERLTRGNLMRVTGTRYNTLCSQREAEKSHTRAEEQAFVTADGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRARVRCFRCGKMGHRIAECPTKETDIVXXXXXXXXXXXXXXXXXEEEKA 286
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE) HSP 1 Score: 164 bits (414), Expect = 2.450e-45 Identity = 94/234 (40.17%), Postives = 133/234 (56.84%), Query Frame = 1
Query: 10 ENDKSLIRRCKSPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQ-ECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRA----RV---RCFRCGKMGHRIAECQTKEGDII-RCEVCTGFGHKKDRCPMEEEKAVIA 684
E DK+++RRC +P+EA+ LDA Y PETQG QQLF F++YQ K +P +L +L + M+Q+ GGA ++D+FVF R +++LP E EV K+ LS LTR L+ TR+N+L + E EQA+IA DG GK +G G++K+A RV RCFRC GHR +C TKE D + +C+ C+GFGH ++C E+A +A
Sbjct: 96 ETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLTEEWRKEGEKGSGGEQAYIAGDGTGKGRQAGGGRGSKS----------NGRGSKKKAGTDDRVDHRRCFRCNHRGHRKPDCTTKEEDFLEQCDTCSGFGHNSEKCATPTEEACMA 319
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5KFR9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR9_9PHAE) HSP 1 Score: 150 bits (379), Expect = 8.580e-42 Identity = 75/106 (70.75%), Postives = 77/106 (72.64%), Query Frame = 1
Query: 367 SQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
SQ+E E+SHTRAAEQAFI ADGAGK GGGAEKRARVRCFRCGKMGHRIAEC TKE DIIRCEVC GFGHKKDRC MEEEKAVIA
Sbjct: 98 SQQEVEKSHTRAAEQAFIPADGAGKGESPNRALRKGNSDGKGNGDESGGGGAEKRARVRCFRCGKMGHRIAECPTKESDIIRCEVCKGFGHKKDRCTMEEEKAVIA 203
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5K0U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.390e-25 Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1
Query: 523 EKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
EKRARVRCFRCGKMG RIAEC TKE D+IR EVCTGFGHKKDRCPMEEE+AVIA
Sbjct: 152 EKRARVRCFRCGKMGRRIAECPTKESDVIRYEVCTGFGHKKDRCPMEEEEAVIA 205
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 3.710e-14 Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 1
Query: 154 DPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRA--RVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVI 681
+P L LE + ++E G A + FV FV +LP EC+ AK L +A L R ++ + T + L R+A R E A + +DG+ XXXXXXXXXXXXXXXXXXXXXX RVRCFRCGK GH++A+C E + C+ C G+GH K +CP EE V+
Sbjct: 14 NPIEHLYSLELLYARLREKGLNA-EQPFVLAHFVGSLPPECQQAKFLLETATALDRAEIVRIVSTVHVSLPEGRKASRGQRRV-EHALLPSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSMRVRCFRCGKEGHQVADCT--ESKPVGCKTCKGYGHDKSKCPTEEAVLVV 187
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JDR0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR0_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 5.680e-7 Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query: 535 RVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVI 681
R RCFRCGKMGH++A+C E +RCE C +GH K + P EE V+
Sbjct: 299 RGRCFRCGKMGHQVADCT--ESKPVRCERCKSYGHDKSKYPTEEAVLVV 345
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 8.000e-7 Identity = 58/204 (28.43%), Postives = 91/204 (44.61%), Query Frame = 1
Query: 43 SPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEK---------------RARVRCFRCGKMGHRIAECQTKEGDII 609
+P + L +Y PE+ + F + K +P + R++ + + + G +++ FV RFV+AL E + K L LT+ +MS Y + + + + + R AE+A+IA DG G+ XXX X X XXXX R RC+RCG +GH+IA+C T+E D I
Sbjct: 899 TPHGTIRELKGMYDPESAMQPVDDLDAFMSFTAPTKNNPQLVFRDMLTTGERLNQ-EGLGINEGFVLHRFVSALSDEYAMTKHALRRTKTLTKEQVMSEIAIEYKAIL-ENQKKRNGARGAERAYIA-DGGGRKGQSSSRGRGXXXRXRXGXXXXXXXXXXXXXXXXXXXXXXXXXTRFPGRCYRCGHVGHQIADCTTEEKDFI 1099
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JN70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN70_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.340e-6 Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 541 RCFRCGKMGHRIAECQTKEGDII-RCEVCTGFGHKKDRCPMEEEKAVIA 684
R +RCG +GH+IA+C T+E D I RC C G+GHK+D+C EE AV+A
Sbjct: 416 RRYRCGHVGHQIADCTTEEKDFIPRCGKCAGWGHKEDKCATEE--AVLA 462 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59566.16514.1 >prot_Ecto-sp13_S_contig59566.16514.1 ID=prot_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp MARENDKSLIRRCKSPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVKback to top mRNA from alignment at Ecto-sp13_S_contig59566:154..837+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59566.16514.1 ID=mRNA_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59566:154..837+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59566:154..837+ >mRNA_Ecto-sp13_S_contig59566.16514.1 ID=mRNA_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59566:154..837+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |