mRNA_Ecto-sp13_S_contig59566.16514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59566.16514.1
Unique NamemRNA_Ecto-sp13_S_contig59566.16514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5K9V8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 3.170e-92
Identity = 167/211 (79.15%), Postives = 170/211 (80.57%), Query Frame = 1
Query:   52 EAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
            +AMETLDAVYKPETQGEAQQLFHRFERYQVDV VDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAKENLSSA KLTRG+LM VTGTRYN LCSQREAE+SHTRAAEQAF  ADGAGK      XXXXXXXXXXXXXXXX   GAEKRA VRCFRCGK GHRIAEC TKE D                     EKAVIA
Sbjct:   18 DAMETLDAVYKPETQGEAQQLFHRFERYQVDVMVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSSAEKLTRGDLMRVTGTRYNTLCSQREAEKSHTRAAEQAFFTADGAGKDESRNRXXXXXXXXXXXXXXXXXXXGAEKRACVRCFRCGKRGHRIAECPTKERDXXXXXXXXXXXXXXXXXXXXXEKAVIA 228          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JXF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF6_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.040e-76
Identity = 151/188 (80.32%), Postives = 156/188 (82.98%), Query Frame = 1
Query:  112 LFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKA 675
            +FHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAK NLSSA +LTRGNLM VTGTRYN LCSQREAE+SHTRA EQAF+ ADGAG XXXXXXXXXXXXXXXXXXXXXX     EKRARVRCFRCGKMGHRIAEC TKE DI+                 EEEKA
Sbjct:   99 VFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKVNLSSAERLTRGNLMRVTGTRYNTLCSQREAEKSHTRAEEQAFVTADGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRARVRCFRCGKMGHRIAECPTKETDIVXXXXXXXXXXXXXXXXXEEEKA 286          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.450e-45
Identity = 94/234 (40.17%), Postives = 133/234 (56.84%), Query Frame = 1
Query:   10 ENDKSLIRRCKSPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQ-ECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRA----RV---RCFRCGKMGHRIAECQTKEGDII-RCEVCTGFGHKKDRCPMEEEKAVIA 684
            E DK+++RRC +P+EA+  LDA Y PETQG  QQLF  F++YQ   K +P  +L +L  +  M+Q+ GGA ++D+FVF R +++LP  E EV K+ LS    LTR  L+    TR+N+L  +   E       EQA+IA DG GK                      +G G++K+A    RV   RCFRC   GHR  +C TKE D + +C+ C+GFGH  ++C    E+A +A
Sbjct:   96 ETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLTEEWRKEGEKGSGGEQAYIAGDGTGKGRQAGGGRGSKS----------NGRGSKKKAGTDDRVDHRRCFRCNHRGHRKPDCTTKEEDFLEQCDTCSGFGHNSEKCATPTEEACMA 319          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5KFR9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.580e-42
Identity = 75/106 (70.75%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  367 SQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
            SQ+E E+SHTRAAEQAFI ADGAGK                       GGGAEKRARVRCFRCGKMGHRIAEC TKE DIIRCEVC GFGHKKDRC MEEEKAVIA
Sbjct:   98 SQQEVEKSHTRAAEQAFIPADGAGKGESPNRALRKGNSDGKGNGDESGGGGAEKRARVRCFRCGKMGHRIAECPTKESDIIRCEVCKGFGHKKDRCTMEEEKAVIA 203          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5K0U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.390e-25
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  523 EKRARVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVIA 684
            EKRARVRCFRCGKMG RIAEC TKE D+IR EVCTGFGHKKDRCPMEEE+AVIA
Sbjct:  152 EKRARVRCFRCGKMGRRIAECPTKESDVIRYEVCTGFGHKKDRCPMEEEEAVIA 205          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.710e-14
Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  154 DPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEKRA--RVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVI 681
            +P   L  LE +   ++E G  A +  FV   FV +LP EC+ AK  L +A  L R  ++ +  T +  L   R+A     R  E A + +DG+  XXXXXXXXXXXXXXXXXXXXXX           RVRCFRCGK GH++A+C   E   + C+ C G+GH K +CP EE   V+
Sbjct:   14 NPIEHLYSLELLYARLREKGLNA-EQPFVLAHFVGSLPPECQQAKFLLETATALDRAEIVRIVSTVHVSLPEGRKASRGQRRV-EHALLPSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSMRVRCFRCGKEGHQVADCT--ESKPVGCKTCKGYGHDKSKCPTEEAVLVV 187          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JDR0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.680e-7
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  535 RVRCFRCGKMGHRIAECQTKEGDIIRCEVCTGFGHKKDRCPMEEEKAVI 681
            R RCFRCGKMGH++A+C   E   +RCE C  +GH K + P EE   V+
Sbjct:  299 RGRCFRCGKMGHQVADCT--ESKPVRCERCKSYGHDKSKYPTEEAVLVV 345          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.000e-7
Identity = 58/204 (28.43%), Postives = 91/204 (44.61%), Query Frame = 1
Query:   43 SPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKXXXXXXXXXXXXXXXXXXXXXXSGGGAEK---------------RARVRCFRCGKMGHRIAECQTKEGDII 609
            +P   +  L  +Y PE+  +       F  +    K +P +  R++    + + +  G  +++ FV  RFV+AL  E  + K  L     LT+  +MS     Y  +  + + + +  R AE+A+IA DG G+          XXX X X XXXX                      R   RC+RCG +GH+IA+C T+E D I
Sbjct:  899 TPHGTIRELKGMYDPESAMQPVDDLDAFMSFTAPTKNNPQLVFRDMLTTGERLNQ-EGLGINEGFVLHRFVSALSDEYAMTKHALRRTKTLTKEQVMSEIAIEYKAIL-ENQKKRNGARGAERAYIA-DGGGRKGQSSSRGRGXXXRXRXGXXXXXXXXXXXXXXXXXXXXXXXXXTRFPGRCYRCGHVGHQIADCTTEEKDFI 1099          
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Match: A0A6H5JN70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN70_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.340e-6
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  541 RCFRCGKMGHRIAECQTKEGDII-RCEVCTGFGHKKDRCPMEEEKAVIA 684
            R +RCG +GH+IA+C T+E D I RC  C G+GHK+D+C  EE  AV+A
Sbjct:  416 RRYRCGHVGHQIADCTTEEKDFIPRCGKCAGWGHKEDKCATEE--AVLA 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59566.16514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K9V8_9PHAE3.170e-9279.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXF6_9PHAE3.040e-7680.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J624_9PHAE2.450e-4540.17CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KFR9_9PHAE8.580e-4270.75CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0U0_9PHAE3.390e-2588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L142_9PHAE3.710e-1443.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR0_9PHAE5.680e-751.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KU45_9PHAE8.000e-728.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN70_9PHAE1.340e-655.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59566contigEcto-sp13_S_contig59566:154..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.7842836-CDS-Ecto-sp13_S_contig59566:153..8371681463827.7842836-CDS-Ecto-sp13_S_contig59566:153..837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59566 154..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59566.16514.1prot_Ecto-sp13_S_contig59566.16514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59566 154..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59566.16514.1

>prot_Ecto-sp13_S_contig59566.16514.1 ID=prot_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MARENDKSLIRRCKSPQEAMETLDAVYKPETQGEAQQLFHRFERYQVDVK
VDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLS
SAAKLTRGNLMSVTGTRYNMLCSQREAEESHTRAAEQAFIAADGAGKGES
RNRARLKGNSNGKGNGNERSGGGAEKRARVRCFRCGKMGHRIAECQTKEG
DIIRCEVCTGFGHKKDRCPMEEEKAVIA
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mRNA from alignment at Ecto-sp13_S_contig59566:154..837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59566.16514.1 ID=mRNA_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59566:154..837+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGTGAGAATGATAAATCGCTTATCAGAAGGTGTAAGTCCCCCCA AGAGGCTATGGAGACGCTCGACGCCGTCTACAAACCCGAAACGCAGGGAG AAGCACAGCAGCTTTTTCACCGGTTTGAGCGGTACCAGGTTGACGTGAAG GTAGATCCGAACGTGGCACTGCGTGAGTTGGAGAACATCCGCGACATGAT CCAGGAATGCGGGGGCGCCGCCCTCGATGACCGGTTCGTGTTCACACGCT TCGTGAATGCTCTTCCCCAAGAGTGTGAGGTCGCAAAAGAGAACCTCTCA TCCGCTGCGAAGCTGACAAGGGGGAACCTCATGAGCGTGACGGGAACTCG CTACAACATGCTCTGCAGCCAGCGGGAGGCGGAGGAGAGCCACACGAGGG CAGCGGAACAGGCTTTCATCGCAGCCGACGGCGCCGGGAAGGGCGAAAGT CGCAACCGCGCCCGCCTCAAGGGAAACAGCAACGGCAAAGGCAACGGCAA CGAGAGAAGTGGGGGCGGGGCGGAGAAACGGGCACGCGTCCGGTGCTTCC GATGCGGAAAGATGGGGCATCGGATTGCGGAATGCCAAACAAAGGAAGGC GACATTATCCGGTGCGAGGTTTGCACGGGATTCGGCCACAAAAAGGATCG TTGCCCAATGGAAGAAGAGAAAGCGGTAATAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59566:154..837+

>mRNA_Ecto-sp13_S_contig59566.16514.1 ID=mRNA_Ecto-sp13_S_contig59566.16514.1|Name=mRNA_Ecto-sp13_S_contig59566.16514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59566:154..837+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGTGAGAATGATAAATCGCTTATCAGAAGGTGTAAGTCCCCCCA
AGAGGCTATGGAGACGCTCGACGCCGTCTACAAACCCGAAACGCAGGGAG
AAGCACAGCAGCTTTTTCACCGGTTTGAGCGGTACCAGGTTGACGTGAAG
GTAGATCCGAACGTGGCACTGCGTGAGTTGGAGAACATCCGCGACATGAT
CCAGGAATGCGGGGGCGCCGCCCTCGATGACCGGTTCGTGTTCACACGCT
TCGTGAATGCTCTTCCCCAAGAGTGTGAGGTCGCAAAAGAGAACCTCTCA
TCCGCTGCGAAGCTGACAAGGGGGAACCTCATGAGCGTGACGGGAACTCG
CTACAACATGCTCTGCAGCCAGCGGGAGGCGGAGGAGAGCCACACGAGGG
CAGCGGAACAGGCTTTCATCGCAGCCGACGGCGCCGGGAAGGGCGAAAGT
CGCAACCGCGCCCGCCTCAAGGGAAACAGCAACGGCAAAGGCAACGGCAA
CGAGAGAAGTGGGGGCGGGGCGGAGAAACGGGCACGCGTCCGGTGCTTCC
GATGCGGAAAGATGGGGCATCGGATTGCGGAATGCCAAACAAAGGAAGGC
GACATTATCCGGTGCGAGGTTTGCACGGGATTCGGCCACAAAAAGGATCG
TTGCCCAATGGAAGAAGAGAAAGCGGTAATAGCG
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