mRNA_Ecto-sp13_S_contig5954.16507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5954.16507.1
Unique NamemRNA_Ecto-sp13_S_contig5954.16507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: D7G1T8_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.280e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAK 156
            LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAK
Sbjct:  227 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAK 278
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: A0A482RU92_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU92_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 1.190e-9
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKVFTPLAVLKEDNYFAQTSRNL 219
            L ++ +PTV+CF+DG+A   ++GF+GLT GL     DEWP   LAR L    +     VL E+    Q+ + L
Sbjct:  242 LIIRTMPTVVCFVDGIAQDKVVGFEGLTEGLEEGHEDEWPTVRLARLLVSKHMLRKDLVLDEEEVAVQSQQTL 314
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: A0A835YQ77_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ77_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.420e-7
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAK 156
            LQV++LP V+ F DG++V  I GF+GL         DEWP  NLA+ LALAK
Sbjct:  230 LQVRVLPCVVIFRDGISVAQIQGFEGLNEEQEKGTEDEWPTGNLAKRLALAK 281
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: A0A7S3H0T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0T6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-6
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKVFTPLAVLKEDN 192
            L ++ +PTV+ F+DGVA+  I+GF+ L   +PP + D WP   LAR LA         ++ +D 
Sbjct:  193 LVIRTMPTVVIFLDGVAIDKILGFEELADSMPPGQEDSWPTIVLARLLAAKGGINSKVIVDDDE 256
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: J9IP16_9SPIT (Thioredoxin domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IP16_9SPIT)

HSP 1 Score: 52.4 bits (124), Expect = 3.600e-6
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKVFTPLAVLKEDNYFAQTSR 213
            LQV++LPT+ICFIDGVAV  ++GF+ L A       D++P+  L R L  + V   L+  ++   F +  +
Sbjct:  176 LQVQVLPTIICFIDGVAVDRVVGFEDLGAK------DDFPMIALTRRLIRSGVLKALSKAEKGQIFVKRGK 240
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BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Match: A0A077ZT00_STYLE (Phosducin-like protein 3 isoform 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZT00_STYLE)

HSP 1 Score: 51.2 bits (121), Expect = 9.290e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKVFTPL 171
            LQV++LPT+ICFIDG+AV  I+GF+ L A       D++P  +L R L  + V  PL
Sbjct:  173 LQVQVLPTMICFIDGIAVDRIVGFEDLGAR------DDFPQISLTRRLIRSGVLKPL 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5954.16507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G1T8_ECTSI1.280e-26100.00Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A482RU92_9ARCH1.190e-939.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YQ77_9STRA3.420e-751.92Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S3H0T6_9STRA1.570e-637.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
J9IP16_9SPIT3.600e-638.03Thioredoxin domain-containing protein n=1 Tax=Oxyt... [more]
A0A077ZT00_STYLE9.290e-647.37Phosducin-like protein 3 isoform 1 n=1 Tax=Stylony... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5954contigEcto-sp13_S_contig5954:29..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score108.2
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D7G1T8
Model size228
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007010,GO:0007017,GO:0007049,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016049,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022402,GO:0030865,GO:0031122,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031683,GO:0032506,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042221,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043622,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048285,GO:0048487,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051211,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0055086,GO:0060255,GO:0061640,GO:0065007,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0080090,GO:0097435,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902410,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-07_004190.1
Cds size228
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.299548-CDS-Ecto-sp13_S_contig5954:28..2561681463827.299548-CDS-Ecto-sp13_S_contig5954:28..256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5954 29..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5954.16507.1prot_Ecto-sp13_S_contig5954.16507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5954 29..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5954.16507.1

>prot_Ecto-sp13_S_contig5954.16507.1 ID=prot_Ecto-sp13_S_contig5954.16507.1|Name=mRNA_Ecto-sp13_S_contig5954.16507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
LQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELAL
AKVFTPLAVLKEDNYFAQTSRNLFI*
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mRNA from alignment at Ecto-sp13_S_contig5954:29..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5954.16507.1 ID=mRNA_Ecto-sp13_S_contig5954.16507.1|Name=mRNA_Ecto-sp13_S_contig5954.16507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5954:29..256+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACAGGTGAAGATCCTTCCGACGGTGATCTGCTTCATCGACGGGGTGGC
AGTGCACAACATCATCGGTTTCGACGGCCTGACCGCTGGCCTCCCGCCAG
ACAAGCTGGACGAGTGGCCGCTCTCCAACCTCGCCAGGGAGCTCGCGCTC
GCGAAGGTATTTACACCGCTCGCCGTTCTCAAGGAGGATAACTATTTTGC
GCAAACGAGCCGAAACTTGTTCATCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5954:29..256+

>mRNA_Ecto-sp13_S_contig5954.16507.1 ID=mRNA_Ecto-sp13_S_contig5954.16507.1|Name=mRNA_Ecto-sp13_S_contig5954.16507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5954:29..256+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACAGGTGAAGATCCTTCCGACGGTGATCTGCTTCATCGACGGGGTGGC
AGTGCACAACATCATCGGTTTCGACGGCCTGACCGCTGGCCTCCCGCCAG
ACAAGCTGGACGAGTGGCCGCTCTCCAACCTCGCCAGGGAGCTCGCGCTC
GCGAAGGTATTTACACCGCTCGCCGTTCTCAAGGAGGATAACTATTTTGC
GCAAACGAGCCGAAACTTGTTCATCTAG
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