mRNA_Ecto-sp13_S_contig594.16490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig594.16490.1
Unique NamemRNA_Ecto-sp13_S_contig594.16490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: D8LNR2_ECTSI (Zinc finger, C2H2 type family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR2_ECTSI)

HSP 1 Score: 781 bits (2017), Expect = 2.190e-269
Identity = 499/550 (90.73%), Postives = 508/550 (92.36%), Query Frame = 1 
Query:    1 QMMPSPSTGNVTAAYRGGDDRFGGDDEGVNPTVERGVPAEKEQLRRNLSLLKKKMHGQAGSRRSQSAGPRAGELFGDPNAAPSGPGGPDSHVEGGGRQHLHMTTGTAPAMMPADPGAFLRDRDAAGRALGRRGVGGGARRRPPTDGLGSPYAIDPNPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHQACI--NPAGGRRHGPFEGKHDSRRAGFNSTRTAAPADVAKSRPHDESGAGDVGGGGTGYTRRGTHAAAPARAGGGRACVGGAPGGQGSPDRRRAWEGDNGGXXXX-SQGDXXXXXXXXXXXXXXXXXXXXXD-----DGYVDDLPPDAFPDEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW 1626
            QMMPSPSTGN+TAAYRGG DRFGGDDEG+NP VERGVPAEKEQLRRNLSLLKKKMHGQAGSRRSQSAGPRAGELFGDPNAAPSGPGG DSH+EGGGRQHLHMTTGTAPAMMPADPGAFLRDRDAA RALGRRGVGGGAR     DG GSPYAIDPN RGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        NPAGGRRHGPFEGKHDS R GF S RTAAPADVA+SRPHD SGAGDVGGGGT YTRRGTHAAAPAR GGGRA VGGA GGQGSPDRRRAWEG+NGGXXXX SQGDXXXXXXXXXXXXXXXXXXXX       +GY DDLPPDAFPDEQVELE+CRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGG   XXXXXXXX PP G+DDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNI+AKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW
Sbjct:  514 QMMPSPSTGNLTAAYRGGGDRFGGDDEGMNPPVERGVPAEKEQLRRNLSLLKKKMHGQAGSRRSQSAGPRAGELFGDPNAAPSGPGGVDSHLEGGGRQHLHMTTGTAPAMMPADPGAFLRDRDAAERALGRRGVGGGARXXXXPDGPGSPYAIDPNARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNPAGGRRHGPFEGKHDSPRTGFTSGRTAAPADVARSRPHDHSGAGDVGGGGTRYTRRGTHAAAPARPGGGRARVGGASGGQGSPDRRRAWEGENGGXXXXXSQGDXXXXXXXXXXXXXXXXXXXXGXXXXXXEGYADDLPPDAFPDEQVELEECRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGRGGXXXXXXXXXPPRGFDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIRAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW 1063
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A835Z9Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.110e-37
Identity = 106/197 (53.81%), Postives = 128/197 (64.97%), Query Frame = 1 
Query: 1036 VELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKE----KGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSGSLLGQAARKTASGASGKGR 1614
            V+L+QC  CGRRF   A  KH   C +VF  KRK FD A+MR+ GTE+ +F  +    +G A  XXXXXXXXXXX      DD PV G    GA+S+KWRQQS  FR+A+R AR+V  AQ  G  LA LP    +APDPSL+PCPHC RRF+E A ERH+  C +I+A+PS L KGSG  LG A+RK     SG GR
Sbjct:  234 VQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNG--GAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKP----SGPGR 424
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A7S4DGN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGN0_HETAK)

HSP 1 Score: 137 bits (345), Expect = 4.880e-33
Identity = 90/179 (50.28%), Postives = 114/179 (63.69%), Query Frame = 1 
Query: 1060 CGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTE----LEKFAKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSGSLLGQAARK 1584
            CGR+F   AL KH + C KVF  KR+ FDT + R+ G E    L K  +E+     XXXXXXXXXXX      +D PVG   A     SKW+ QS Q R+A++Q R++A  +K GKSLADLP   PSAPDPSL+PCP CGRRF++ A +RH+  C  I+ KP  L++G+   LG AARK
Sbjct:   38 CGRKFNEKALAKHEKVCRKVFVEKRRAFDTQQQRITGEEHAKALAKTKQEEAARXXXXXXXXXXXXXXXXANPEDQPVGNGKA-----SKWKAQSDQLREAMKQQRLIARYEKEGKSLADLPQMAPSAPDPSLVPCPTCGRRFNQQAADRHIPKCATIRNKPKTLQRGARVGLGAAARK 211
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A5A8D635_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D635_CAFRO)

HSP 1 Score: 137 bits (346), Expect = 3.450e-30
Identity = 96/190 (50.53%), Postives = 118/190 (62.11%), Query Frame = 1 
Query: 1027 DEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXX------------GPPGGYDDTPVGGA-AARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSG 1557
            D+ V +E C TCGR+F P ALEKH+R C KVFQ KR+ FD+   R+    L       G  GGXXXXXXXXXXX            GPP G   +  GGA AA  A+   WRQ+S Q R+A++ +R++  AQK GK L DLPP   +APDPSL+PCPHCGR F+ +A ERH+  C   KAKPS L +G G
Sbjct:  469 DDGVRVE-CSTCGRKFRPDALEKHARVCLKVFQKKRRKFDSTSARMPPEALA-----VGADGGXXXXXXXXXXXXGAPARGPRSRGGPPAG---SAAGGADAAARAKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGG 649
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A5A8DGU2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGU2_CAFRO)

HSP 1 Score: 137 bits (345), Expect = 6.660e-30
Identity = 82/190 (43.16%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:  991 GYVDDLPPDAFPDEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGA-AARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSG 1557
            G + + P     D+ V +E C TCGR+F P ALEKH+R C KVFQ KR+ FD+                                 GPP G   +  GGA AA  A+   WRQ+S Q R+A++ +R++  AQK GK L DLPP   +APDPSL+PCPHCGR F+ +A ERH+  C   KAKPS L +G G
Sbjct:  568 GAMSEYPEPDEEDDGVRVE-CSTCGRKFRPDALEKHARVCLKVFQKKRRKFDSTR------------------------------GGPPAG---SAAGGADAAARAKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGG 723
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A5D6XYR0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYR0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.310e-29
Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 1 
Query:  991 GYVDDLPPDAFPDEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKG 1551
            G+     PD FPDE  E+ +C  C RRF   +L KH + C KVF  +RKVF+ A  RL+GTE EK AK+ G++G XXXXXXXXXXX      ++ P+        +   W+ +S  FRDA++ +R V  A K G+   +LPP KPSAPDPSLI C +C RRF++ A ERH+  C+  K +   LK G
Sbjct:   10 GFGSSEQPDEFPDESEEMAECDNCHRRFNVNSLVKHRKVCEKVFTGQRKVFNMAAKRLEGTEAEKVAKKTGKSGXXXXXXXXXXXX-----AEEQPL--------KKPDWKSKSSAFRDAMKASRDVTIALKEGR---ELPPMKPSAPDPSLIQCEYCSRRFNDKAAERHITFCRE-KTQRDSLKSG 179
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A7R9VCN1_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VCN1_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 6.980e-27
Identity = 72/177 (40.68%), Postives = 101/177 (57.06%), Query Frame = 1 
Query: 1027 DEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSG 1557
            D  ++  +C +CGRRF P ALEKH+R C +VF  KR+ +D++  RL+GTE   +A    R GG             P  +  +  G + + G    KW+ QS+  +DA++  R +      G+ + ++P    SAPDPSL+ CPHCGRRF+E A ERHM HC N  AKP  LK G+G
Sbjct:  597 DSDMDRVECGSCGRRFLPEALEKHARVCSRVFANKRRPYDSSRHRLEGTEAAAYAGP--RRGGK------------PAAHGSSHGGKSGSGGGEVPKWKAQSQALQDAMKNMRELKSRLARGEDIRNIPVVA-SAPDPSLVQCPHCGRRFNERAAERHMSHCANTVAKPKFLKAGTG 758
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A8J4ER22_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ER22_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 1.700e-26
Identity = 90/197 (45.69%), Postives = 112/197 (56.85%), Query Frame = 1 
Query: 1003 DLPPDA--FPDEQVELE-QCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKF---------AKEKGRAGGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSG 1557
            DLPPDA  + D+  E   QC TCGRRF P A +KH+R C KVF  KRKVF++A  R+ GT+   F         A   G    XXXXXXXX   G  GG  D   GG          W+ QS Q R A+R+ R V  A   G+ + ++P   PSAPDPSL+ CP+CGRRF+  A ERH+  C +I +KP  LK G+G
Sbjct:  219 DLPPDADGYGDDGGEARVQCGTCGRRFLPEAYDKHARVCAKVFAGKRKVFNSAAKRIGGTDAAGFYNPRAAQRPAPPAGXXXXXXXXXXXXSAMGRGGGPGDFRGGGG------KPAWKAQSDQLRQAMREMRKVGAALARGEDIRNIPH-VPSAPDPSLVQCPNCGRRFNAQAAERHIPRCASIVSKPKFLKAGTG 408
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A812UVN6_SYMMI (ZC2HC1A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UVN6_SYMMI)

HSP 1 Score: 118 bits (295), Expect = 1.720e-26
Identity = 86/187 (45.99%), Postives = 112/187 (59.89%), Query Frame = 1 
Query: 1030 EQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGT-ELEKFAKEKGRA----GGXXXXXXXXXXXGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSVLKKGSGSLLGQA 1575
            EQ+E   C  CGR+F P   EKH + C KVF  K K FD+ +MR+    EL K  +   R+      XXXXXXXXXXX                      KW++QS QFR+A+R AR+VA A+K+G  + ++    PSAPDPSL+PCP+CGR F+E A ERH+  CKNI+A+P  LK+GSG   G+A
Sbjct:   17 EQLE---CPDCGRKFNPIPYEKHVKICAKVFLQKSKAFDSKKMRIADNPELLKIQQAALRSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKWKEQSNQFREAMRMARMVAKAEKTGGPMPEM---APSAPDPSLVPCPNCGRTFNERAAERHIPQCKNIRAQPKSLKRGSGGAGGRA 197
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BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Match: A0A8J5J921_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J921_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.390e-26
Identity = 70/179 (39.11%), Postives = 100/179 (55.87%), Query Frame = 1 
Query: 1015 DAFPDEQVELEQCRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGXXXXXXXXXXXGP----PGGYDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIKAKPSV 1539
            D + D   ++EQC  C R+F  A+ +KH + C KVF  +RKVF+ A  RL+GTE EK AKE                 GP    P    + P+   +A     + W+Q+S+ FR+A++ +R V+ A K GK   +LPP  PSAPDPSLI C +C RRF+E A ERH+  C+    + ++
Sbjct:   23 DEYGDGAEQMEQCHNCSRKFNAASFQKHQKICEKVFSGQRKVFNMAAKRLEGTEAEKLAKEA-----------KTNNKGPTRKTPLSATEQPIKVKSA-----ADWKQKSEMFRNAMKASRDVSKALKEGK---ELPPVMPSAPDPSLIQCEYCSRRFNEKAAERHINFCREKSQRDNI 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig594.16490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNR2_ECTSI2.190e-26990.73Zinc finger, C2H2 type family protein n=2 Tax=Ecto... [more]
A0A835Z9Y9_9STRA1.110e-3753.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DGN0_HETAK4.880e-3350.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5A8D635_CAFRO3.450e-3050.53Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DGU2_CAFRO6.660e-3043.16Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5D6XYR0_9STRA3.310e-2945.99Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7R9VCN1_9CHLO6.980e-2740.68Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
A0A8J4ER22_9CHLO1.700e-2645.69Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A812UVN6_SYMMI1.720e-2645.99ZC2HC1A protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A8J5J921_9STRA2.390e-2639.11Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig594contigEcto-sp13_S_contig594:18058..23579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score793.1
Seed ortholog evalue8.1e-227
Seed eggNOG ortholog2880.D8LNR2
Preferred nameZC2HC1A
Model size2220
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.zinc-finger of a C2HC-type
EggNOG OGsKOG3940@1,KOG3940@2759
Cds size1626
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig594.16490.1prot_Ecto-sp13_S_contig594.16490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig594 18649..23576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.7690027-UTR-Ecto-sp13_S_contig594:18057..186481681463825.7690027-UTR-Ecto-sp13_S_contig594:18057..18648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig594 18058..18648 -
1681463825.8486624-UTR-Ecto-sp13_S_contig594:23576..235791681463825.8486624-UTR-Ecto-sp13_S_contig594:23576..23579Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig594 23577..23579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.7850966-CDS-Ecto-sp13_S_contig594:18648..187471681463825.7850966-CDS-Ecto-sp13_S_contig594:18648..18747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 18649..18747 -
1681463825.795732-CDS-Ecto-sp13_S_contig594:19539..197101681463825.795732-CDS-Ecto-sp13_S_contig594:19539..19710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 19540..19710 -
1681463825.8063276-CDS-Ecto-sp13_S_contig594:20408..206301681463825.8063276-CDS-Ecto-sp13_S_contig594:20408..20630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 20409..20630 -
1681463825.816464-CDS-Ecto-sp13_S_contig594:21319..220341681463825.816464-CDS-Ecto-sp13_S_contig594:21319..22034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 21320..22034 -
1681463825.8273325-CDS-Ecto-sp13_S_contig594:22636..228631681463825.8273325-CDS-Ecto-sp13_S_contig594:22636..22863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 22637..22863 -
1681463825.8379812-CDS-Ecto-sp13_S_contig594:23384..235761681463825.8379812-CDS-Ecto-sp13_S_contig594:23384..23576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 23385..23576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig594.16490.1

>prot_Ecto-sp13_S_contig594.16490.1 ID=prot_Ecto-sp13_S_contig594.16490.1|Name=mRNA_Ecto-sp13_S_contig594.16490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=542bp
MMPSPSTGNVTAAYRGGDDRFGGDDEGVNPTVERGVPAEKEQLRRNLSLL
KKKMHGQAGSRRSQSAGPRAGELFGDPNAAPSGPGGPDSHVEGGGRQHLH
MTTGTAPAMMPADPGAFLRDRDAAGRALGRRGVGGGARRRPPTDGLGSPY
AIDPNPRGGGAAAAAAAARTSARQRQHRQPPLEQQNRQHAHHQQQQVHQA
CINPAGGRRHGPFEGKHDSRRAGFNSTRTAAPADVAKSRPHDESGAGDVG
GGGTGYTRRGTHAAAPARAGGGRACVGGAPGGQGSPDRRRAWEGDNGGGG
GGSQGDGSRNRGGGGSRGKGGGGRGRGDDGYVDDLPPDAFPDEQVELEQC
RTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKG
RAGGRGGRRRGRGGRGPPGGYDDTPVGGAAARGARSSKWRQQSKQFRDAL
RQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHM
QHCKNIKAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW*
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mRNA from alignment at Ecto-sp13_S_contig594:18058..23579-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig594.16490.1 ID=mRNA_Ecto-sp13_S_contig594.16490.1|Name=mRNA_Ecto-sp13_S_contig594.16490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:18058..23579- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGATGCCCAGCCCGTCCACCGGCAACGTGACGGCCGCATACCGAGG
CGGAGATGATCGATTCGGGGGGGACGACGAAGGGGTCAACCCCACCGTAG
AGAGGGGCGTGCCTGCCGAGAAGGAGCAGCTGCGACGCAACCTGTCGCTT
CTGAAGAAAAAGATGCACGGCCAGGCCGGCAGCAGGAGGAGCCAGGTAGG
ACAAAAGTTTTCCCGTACCTTTACGGGGGCTCCGCAGCTGTAGATGCGGG
ACTGTCAAACAGAGAGAGAGGGAGTAACGATAGTGAAATACTTTCGGCGC
TGTCAGATACGTTCGCCTCTGGTGTCGAAGCACCATCCATGTCAGATTGT
GGTGTCTGACCCGAAGACTCTCGCCGGGGTGGAGGGTTAAGATGTCCACG
GCCAGATGTCCACAGCAGTTCCATCACACGCTAGGCCTCCGCACAAGCAT
TTCAGACCAAACTGACGCCTCATCGCTCTGCACGAGGACCTAAAAGTCAG
TTCAAGACACTTGTGGCCGTTTTCTTCGCTGACCGCAGGACAAATGCAAA
ATCACCTCCGTTTAGCGCCGCGCGGACATCGGCATTCCTTTGTTGTATGT
GTTGGGACAAACATCCGCCCTCTCGCTGCATCAGAAACCTCTGCTAAGCC
TTACTCCAAGCACAACCAACAAAATCGCACATCACCGGTTATGTTCCGTC
GTCTGTCGTCTGGCAGAGCGCAGGGCCAAGGGCGGGAGAACTGTTTGGCG
ACCCCAACGCCGCACCGAGCGGCCCGGGTGGCCCCGACTCTCACGTGGAG
GGGGGAGGGCGGCAGCACCTCCACATGACTACAGGAACGGCGCCAGCCAT
GATGCCTGCCGACCCCGGGGCGTTCTTGAGAGATCGCGATGCGGCGGGGC
GCGCGCTTGGCAGGAGAGGTGTCGGGGGTGGTGCACGAAGGAGGTGAGTT
TTCGTTTCCCCCCAAACAATAGTCATGAGGGTACTCTTACGTTCTCCCAG
CAGCTGTTTTGGAGATCCCGACATGTTACTGGTTTTAGTATCATGTTAAC
CTAAAAGTTTCGCAGAATTTGGCTCTCGTCTACTTTTTAGCACCCGATGG
ATCAAACCGCGAGGTTTACTCGGAGCTACGCCGGGTTGTCAGACTGCAAG
ACTCGTCTGTTGGTTGGTTGGTCGGGTGTCTCGTGTTGTATGCATACCGC
AGTGTGCAGTCGAGGCATTCGTGATTCCGAGGCACTGCTGTACAGCAGTT
TGCCCCCGTGTGCCAACAAGCGAACGACAGCGAGCTCGACAAGTGGGAGG
ATTCTGGGGAAATCGTTCAGATGCGATGAAAGCGCGAACCGAAGAGCCTC
TTGTGTTCGTGAACCGCTCCGCCGATTTATGGCTCACGATTTCACCAGCA
TCTTCTAGTAGCTGAAAGGCATCGACGGCATTCGCGACACCTGCAGACTC
GGTCACAAGCAGAGTGCTCGAAGGTCATCAAGACCAGAACAATACAGACT
TTTTTCCCTTTTTGTCTCGCGTTCCTTCGCCCACGTTTTTTACAGACCGC
CGACGGACGGCCTAGGCAGCCCTTACGCCATCGATCCCAACCCCCGCGGC
GGCGGCGCCGCCGCCGCTGCCGCGGCTGCTCGAACCAGCGCCCGCCAACG
CCAGCACCGACAGCCGCCGCTCGAACAACAGAACCGTCAACATGCTCACC
ACCAGCAGCAGCAGGTTCATCAAGCGTGCATCAACCCGGCAGGTGGCCGG
AGACACGGGCCGTTTGAAGGCAAGCACGACTCGCGCAGGGCAGGTTTTAA
TAGCACTCGCACGGCCGCACCAGCAGACGTCGCTAAGAGCCGCCCCCACG
ACGAGTCAGGTGCCGGAGACGTGGGCGGAGGTGGCACCGGGTACACCCGG
AGAGGCACGCACGCAGCAGCACCGGCACGGGCCGGTGGGGGCCGCGCCTG
CGTCGGCGGAGCCCCCGGTGGTCAAGGCTCGCCTGATCGACGCCGGGCTT
GGGAGGGGGACAACGGCGGCGGCGGCGGCGGTAGTCAAGGCGACGGTAGT
AGAAATCGAGGCGGCGGTGGTAGTCGCGGGAAAGGAGGAGGGGGCCGGGG
GCGAGGGGATGACGGCTACGTCGACGACCTTCCGCCGGACGCGTTCCCGG
ACGAGCAGGTGGAGCTCGAGCAGTGCAGGACGTGCGGAAGGAGGTTCACC
CCGGCGGCGCTGGAAAAGCACTCGCGGGCCTGTCACAAGGTGTTCCAGGC
TAAGCGTAAGGTGAGGGGGTGTTGGAAGATGCTGCCGCCGAGAAGGGGGA
GTTTTGGACGCAAGCCTCGCTTGGATGCGATTTTAACACGATTGTGTTGA
GTTCGATGTGCGTGTTCTTTCTCGAAGAAGTTACGGGTGAGCGTTGGCTT
GGGTGTGACAGTGTAGTGCAGCTACTGCTTGTGGCCATGAGCTGTCGCCC
CTCGCCGTAATTTTAGGGTGGCGGCCGTTTTTTCTCCATGTGCCAAAGTC
ACCGGGATGAGAGTCCATGTCTCCAAATAGAATGGGACTACGTGCCCAAT
AATCCGTGTCTATCCCGAACATGAGTTCCTTCGGACCGTAAACTCGCTAT
CGAATATTCAGTATGTATCTTGACGGTGTTGACGACATCCGTTCGTTTCA
CCTGTGTTTCGTAGACACTCAGGGGTCTCGGTTTAGCGCCTCCCCTGTTT
ACCGACACGCCCTGTTTAGCGACCACAACACCACGTCGCACCGCCGCACC
CCGGTAGTATAACTGCTACTTCGATATACTTGTTTGTTCGGTTTAGCGAC
CTGCCCTGAATAGCGGCTACATTTCGTCGTGCGCTAGGGGTCGCTAAACC
GCGCCCCCCAACTGTAGATTACACCTCTGGGGTTTCTGCCGTCCCGTCAA
CCGCTTTGTGAGTGTCACCCCACCTCAATCACACTTGCCAAACCCTTAGG
TATTCGACACGGCCGAGATGAGACTCAAGGGCACGGAGCTCGAGAAGTTC
GCCAAGGAGAAAGGTCGAGCGGGGGGGAGAGGAGGGCGAAGGAGAGGCCG
TGGCGGGAGAGGACCGCCTGGAGGGTACGATGACACCCCCGTAGGTGGAG
CCGCGGCCAGGGGGGCGAGGTCTAGCAAGTGGAGGCAGCAGTCTAAACAG
TTTAGGGACGCCCTTCGCCAGGTGTGTACTGAAGCAGGAAGACTTCGTCG
TCCCTTCGCGCTCTCGCCCTAATCCTTAGCGTGGAGGCCTTTGGCCGGGG
TGAGATGATGATCGTCTCGATGCTGCCCCTGAGGGCGAGATTGAGCGCTA
TGATCGTGTGCGCATGATATCCTTTGACGGCAGCAGTGTGTGTTGGATAG
GTATGCCCCATACTGTGACGTAAATGTTTTTGTCGACGCGGTTGTGAGAC
GAATGCCATGCCTCTCGTCTTATCGGCGCATCAACTCGATACGGGCTATG
CGTGTCGCACGGCACGAATATCGAAGCAGCACCAGAACAGTGGTGAGCCA
ATGCTGGCAATAGGGGGTGGTTATCAAGACGAAGATTTCCATTGGGGACT
GAAGTGGTGTGTATTCGCTGCACGGTCCATTTCGTGGAATGGGGTTCCGA
GTTTGAGCTAAAGACACCCCCCGAACAGAGGCAACCCCGAGAGGTTTGAA
GTCTGCAACGACGCTGATGGACATTTCTTTCTCTTCGTTTCGTCAGCGTG
CTACAGTGACGCACGCGGAGGAGGAGGCACCCCTCCTCAATCAACCCGCA
ATATCCAGGGCTTGAATTCGTCGTGCACGTAATGATCCATCCGCATCGGT
CGGGTAACAGCCGCAACCTTTTGCCCGGTGATACCTGTATTTTGATTTTT
TCGGGGGAAACCATGGCAGGCGAGGGTCGTAGCGGATGCTCAGAAGAGCG
GCAAGAGCCTGGCCGACCTGCCGCCGCCGAAACCGTCGGCTCCGGACCCT
AGCTTGATCCCGTGTCCCCACTGTGGGCGGAGGTTCAGCGAGCTCGCGGG
CGAGCGACACATGCAGCACTGCAAGAACATCAAGGCCAAGGTGTGTTCGC
TTCTTCCACAAGAAGCTGGAAAATTTGTGTTGCTGTCTTGTTCCGCTGGT
GACCCCATCACGGCTTATTGGCTGTGCGGGTTGCCGCCTTAAACTCGCCT
GCTTTAGCTAGTTTTGGCGCCATTCTGCGGGAAGATGCACGCCCTTTACA
TTTCGAAGAAGTGGGGGACCAAACTCCGCACGGGACGCATACGCCCTCTC
GCGTAGAAATGATGTTTTTGGACACCATATTTTGCTACCCGGTGTCTCCC
ACAGCAGTGCTGTAGACTACACGGCAGACCTCCAATGTTCGACGGCATCA
AGCCCGTGTGGTGCCCCTAGCTTGCAGCGAGAACGTCAGAGATTTGATGG
TTCTTAGCTTGGACGGGAATTCGTCATCAGCCTAGAGGTGTCAGTGCATG
TTTCCGTATAAATTAGCGGGCCCTCCACAACGCCCATTGAATAGCGCCGG
TGGCCCTGTACAGCGCCGGTGAAATTGCTGGGCACAGACTGAACCACCAA
GTCATTCTGTACTTTGCCGGTCCGTCTGAATGGCGCTGGTCGATTCGCCT
GGCACACACCGGCGTTGCTGAGGGCCTACTACTGTACTGTACGTACAATA
ATGCCATTTTTTTCTCACGCCCGCAAATCATGCTGCCGGCTGGCAGCACA
CTTCCAAATAGATTCTAAGATTTATTACGATCGGCGATAACATCTCCCGC
CATGTACGCGTGCTCCTGGTTTCCAAAGTAACCGTCCTACGCACTTTCCC
GCCGCTCCGCTGTCGACCGTGCGCCTCAACAGCCGTCCGTCTTGAAGAAG
GGTTCCGGTAGCCTTCTCGGCCAAGCCGCGCGAAAAACAGCTTCAGGCGC
GTCCGGCAAGGGCAGGGGTCAGCGGTGGTAGCGAGGGGCCGCTCCAAGCT
CGAAGACAGACACAGCGGCGTGCGGGGGCAGCTCCAAGCTCGAGAACAGG
GTGGCAACCTTTTTTCGGAGAATCTCGGCGCGCCCGGTTGTCATCGATGC
GTTGCTGTTCTTGTGGACGTGCCTACCTAGATGGGCCAGTCTCAATTGCG
CGGAACCCTTATCCCCCACTACAGCATTAGATAGACTTCAAATGTTGGGG
GCGGTGCATGGCTTTTAGGTATTTTACGGGCGAGGCAAGCTGTTCGAAAA
CGAGAGGGCCCAAGAGAGGAGGCCGATGCCCCGTTTCGTCTGAGCGCCTT
GACGGAACCTGTCGGAATATGTTTAATACGCCTAGTTTTGTGTGCGAAAG
TCGTGGGGATGGTTGCGTTTGGCTACTGAAGCAGGGCGTATGCGTATTTA
TCAATGTGGCGTGGTGAGCAAGTTAGTTCTCGGTGCGTTTGCTTTTGGTG
GGGGCGCTGCTTGCCGCACAGGGGTGGTCGTACTTTTTTTTTGGTGTGCT
TTCGTGTGTTTGTGGCCGAGCTTTCCTCTAAAGCATCGCCGTAAACTACC
GCTGGTGGTGCCATGTATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig594:18058..23579-

>mRNA_Ecto-sp13_S_contig594.16490.1 ID=mRNA_Ecto-sp13_S_contig594.16490.1|Name=mRNA_Ecto-sp13_S_contig594.16490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:18058..23579- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCCAGCCCGTCCACCGGCAACGTGACGGCCGCATACCGAGGCGG
AGATGATCGATTCGGGGGGGACGACGAAGGGGTCAACCCCACCGTAGAGA
GGGGCGTGCCTGCCGAGAAGGAGCAGCTGCGACGCAACCTGTCGCTTCTG
AAGAAAAAGATGCACGGCCAGGCCGGCAGCAGGAGGAGCCAGAGCGCAGG
GCCAAGGGCGGGAGAACTGTTTGGCGACCCCAACGCCGCACCGAGCGGCC
CGGGTGGCCCCGACTCTCACGTGGAGGGGGGAGGGCGGCAGCACCTCCAC
ATGACTACAGGAACGGCGCCAGCCATGATGCCTGCCGACCCCGGGGCGTT
CTTGAGAGATCGCGATGCGGCGGGGCGCGCGCTTGGCAGGAGAGGTGTCG
GGGGTGGTGCACGAAGGAGACCGCCGACGGACGGCCTAGGCAGCCCTTAC
GCCATCGATCCCAACCCCCGCGGCGGCGGCGCCGCCGCCGCTGCCGCGGC
TGCTCGAACCAGCGCCCGCCAACGCCAGCACCGACAGCCGCCGCTCGAAC
AACAGAACCGTCAACATGCTCACCACCAGCAGCAGCAGGTTCATCAAGCG
TGCATCAACCCGGCAGGTGGCCGGAGACACGGGCCGTTTGAAGGCAAGCA
CGACTCGCGCAGGGCAGGTTTTAATAGCACTCGCACGGCCGCACCAGCAG
ACGTCGCTAAGAGCCGCCCCCACGACGAGTCAGGTGCCGGAGACGTGGGC
GGAGGTGGCACCGGGTACACCCGGAGAGGCACGCACGCAGCAGCACCGGC
ACGGGCCGGTGGGGGCCGCGCCTGCGTCGGCGGAGCCCCCGGTGGTCAAG
GCTCGCCTGATCGACGCCGGGCTTGGGAGGGGGACAACGGCGGCGGCGGC
GGCGGTAGTCAAGGCGACGGTAGTAGAAATCGAGGCGGCGGTGGTAGTCG
CGGGAAAGGAGGAGGGGGCCGGGGGCGAGGGGATGACGGCTACGTCGACG
ACCTTCCGCCGGACGCGTTCCCGGACGAGCAGGTGGAGCTCGAGCAGTGC
AGGACGTGCGGAAGGAGGTTCACCCCGGCGGCGCTGGAAAAGCACTCGCG
GGCCTGTCACAAGGTGTTCCAGGCTAAGCGTAAGGTATTCGACACGGCCG
AGATGAGACTCAAGGGCACGGAGCTCGAGAAGTTCGCCAAGGAGAAAGGT
CGAGCGGGGGGGAGAGGAGGGCGAAGGAGAGGCCGTGGCGGGAGAGGACC
GCCTGGAGGGTACGATGACACCCCCGTAGGTGGAGCCGCGGCCAGGGGGG
CGAGGTCTAGCAAGTGGAGGCAGCAGTCTAAACAGTTTAGGGACGCCCTT
CGCCAGGCGAGGGTCGTAGCGGATGCTCAGAAGAGCGGCAAGAGCCTGGC
CGACCTGCCGCCGCCGAAACCGTCGGCTCCGGACCCTAGCTTGATCCCGT
GTCCCCACTGTGGGCGGAGGTTCAGCGAGCTCGCGGGCGAGCGACACATG
CAGCACTGCAAGAACATCAAGGCCAAGCCGTCCGTCTTGAAGAAGGGTTC
CGGTAGCCTTCTCGGCCAAGCCGCGCGAAAAACAGCTTCAGGCGCGTCCG
GCAAGGGCAGGGGTCAGCGGTGGTAG
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