mRNA_Ecto-sp13_S_contig5930.16471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5930.16471.1
Unique NamemRNA_Ecto-sp13_S_contig5930.16471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A6H5LC82_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC82_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 5.790e-85
Identity = 150/191 (78.53%), Postives = 154/191 (80.63%), Query Frame = 1
Query:    7 DKQRAAIRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLT-------------------------------EPPLPIFDTEAITKDLNRAFMLMSDMHDIRKV 486
            D +RAAIRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLL LAGASFASRVGISLLRNAGP+QSALLVAGQREFEDLAV+LV TPRGRKVL RLR SL+                               EPPLPIFDTEAITKDLNRAFMLMSDMHDI KV
Sbjct:  426 DSERAAIRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLALAGASFASRVGISLLRNAGPSQSALLVAGQREFEDLAVDLVCTPRGRKVLQRLRASLSWGYKTGRRSSRLGETEKRAGGEQERAGARGAEPPLPIFDTEAITKDLNRAFMLMSDMHDIWKV 616          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: D7FQ40_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ40_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 1.710e-83
Identity = 147/191 (76.96%), Postives = 153/191 (80.10%), Query Frame = 1
Query:    7 DKQRAAIRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLT-------------------------------EPPLPIFDTEAITKDLNRAFMLMSDMHDIRKV 486
            D +RAAIRTRLRQEAESQG+DGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGP+QSALLVAGQREFEDLAV+LV T RGRKVLH LR SL+                               EPPLPIFDTEAITKDLNRAFMLMSD HD+ KV
Sbjct:  440 DSERAAIRTRLRQEAESQGVDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPSQSALLVAGQREFEDLAVDLVCTTRGRKVLHSLRASLSWRYKTDFRRSRLGETEKGAGGDKERAGAGGAEPPLPIFDTEAITKDLNRAFMLMSDTHDVWKV 630          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A8J2SV09_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SV09_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.410e-32
Identity = 77/149 (51.68%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMH 471
            +   L  EA ++G+   R+VWA  V K+EHL RHA ADL LDTL YGAHSTATDAL GGLPLLT+ G  F  RVG SLL   G  Q  L V   R+FEDLAV+L  T R R +  R R++       +FDT A T+DL RAF  + + H
Sbjct:  611 VAANLEAEAAARGVHPARLVWADRVPKAEHLRRHAAADLLLDTLIYGAHSTATDALRGGLPLLTVRGEQFPQRVGASLLSAVGANQELLAVDSLRDFEDLAVSLAGTRRLRAL--RARLADEGRASRLFDTRAFTRDLERAFHAVWEGH 757          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: W2IRW4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IRW4_PHYPR)

HSP 1 Score: 123 bits (309), Expect = 8.720e-31
Identity = 75/152 (49.34%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRG-RKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMHDI 477
            I+  L +EA++QGI  GRI +   + K EHL RH    LFLDT  YGAHSTATDAL  GLP++TLAG SFASRVGISLL+N    +  L+    +E+EDLAV L  TP    ++  RLR  +TE   P+F TE  T+ L ++  LM D++ +
Sbjct:  218 IKKNLWKEAQAQGISRGRIRFVSRIPKGEHLQRHRFGRLFLDTFIYGAHSTATDALYAGLPVITLAGDSFASRVGISLLQNLDMEE--LITFSVKEYEDLAVYLAQTPFILSRLQRRLRSDITEFGQPLFRTEQHTQHLEQSQRLMYDIYTL 367          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: W2PYQ7_PHYPN (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2PYQ7_PHYPN)

HSP 1 Score: 124 bits (310), Expect = 8.520e-30
Identity = 75/152 (49.34%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRG-RKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMHDI 477
            I+  L +EA++QGI  GRI +   + K EHL RH    LFLDT  YGAHSTATDAL  GLP++TLAG SFASRVGISLL+N    +  L+    +E+EDLAV L  TP    ++  RLR  +TE   P+F TE  T+ L ++  LM D++ +
Sbjct:  622 IKKNLWKEAQAQGISRGRIRFVSRIPKGEHLQRHRFGGLFLDTFIYGAHSTATDALYAGLPVITLAGDSFASRVGISLLQNLDMEE--LITFSVKEYEDLAVYLAQTPFILSRLQRRLRSDITEFGQPLFRTEQHTQHLEQSQRLMYDIYTL 771          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A6A3NSD3_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NSD3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.160e-29
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVL-HRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMH 471
            I+  L +EA++QGI   R+ +   + K EHL RH    LFLDT  YGAHSTATDAL  GLP+LTLAG SFASRVG+SLL N G  +  L+   ++E+EDLAV L  TP     L HRLR    E   P+F T+  T DL  +  LM D++
Sbjct:  624 IKKNLWREAQAQGISTRRVRFVSRIPKLEHLQRHCTGGLFLDTFIYGAHSTATDALYAGLPVLTLAGDSFASRVGVSLLENLGLQE--LVTFSRKEYEDLAVYLATTPSVLLQLKHRLRRDQVEFEQPLFHTKQHTNDLEASQRLMHDVY 771          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A833SY49_PHYIN (Glycosyl transferase family 41 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SY49_PHYIN)

HSP 1 Score: 121 bits (304), Expect = 5.500e-29
Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRG-RKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMHDI 477
            I+  L +EA++QGI  GR+ +   + K+EHL RH +  LFLDT  YGAHSTATDAL  GLP++TLAG SFASRVG+SLLRN G  +  ++    +E+EDLAV L  TP    ++  RLR    E   P+F T+  T+ L ++  LM +++ +
Sbjct:  626 IKKNLWKEAQAQGISRGRVRFVSRIPKAEHLLRHHVGGLFLDTFIYGAHSTATDALYAGLPVITLAGDSFASRVGVSLLRNLGMEE--VITFSVKEYEDLAVYLAMTPSVLSRLQRRLRSDKAELEQPLFRTKQHTQHLEQSQRLMYEVYSL 775          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A0F2L101_9PROT (Uncharacterized protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2L101_9PROT)

HSP 1 Score: 120 bits (301), Expect = 1.430e-28
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMH 471
            +   L +E E++G+D GR+V+AK V  +EHL+RH LADLFLDTL Y AH+TA+DAL  GLP+LTL G +FA RV   LLR AG  +  L+  GQ  +E  A+ L  +P   + L R R++   P  P+FDT   T++L  A+  M ++H
Sbjct:  701 VAANLCREGEARGLDPGRLVFAKPVPHAEHLARHRLADLFLDTLPYNAHTTASDALWAGLPVLTLQGTTFAGRVAAGLLRAAGLPE--LIADGQEAYEAAAMGLARSPDRLREL-RQRLARNRPICPLFDTPRFTRNLEAAYRAMWEIH 846          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A2U1XJ60_9PROT (Uncharacterized protein n=4 Tax=Azospirillum TaxID=191 RepID=A0A2U1XJ60_9PROT)

HSP 1 Score: 120 bits (301), Expect = 1.430e-28
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMH 471
            +   LR+E +++G+D  R+V+A+ +  +EHL+RH LADLFLDTL Y AH+TA+DAL  GLP+LT  G +FA RV  SLLR AG  +  L+V GQ  +E  AV L  +P GR    R R++L  P  P+FDT   T+ L  A+  M D+H
Sbjct:  707 VAVNLRREGKARGLDPHRLVFAQPLPHAEHLARHRLADLFLDTLPYNAHTTASDALWAGLPVLTRRGTTFAGRVAASLLRAAGLPE--LIVDGQEAYEAEAVALARSP-GRLRDLRQRLALNRPVCPLFDTPRFTRHLEAAYRAMWDIH 852          
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Match: A0A2U1YEK7_9PROT (Protein O-GlcNAc transferase n=7 Tax=Azospirillum TaxID=191 RepID=A0A2U1YEK7_9PROT)

HSP 1 Score: 120 bits (300), Expect = 1.950e-28
Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   25 IRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLDTLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVAGQREFEDLAVNLVYTPRGRKVLHRLRVSLTEPPLPIFDTEAITKDLNRAFMLMSDMH 471
            +   LR+E E++G+D GR+V+A  +  +EHL+RH LADLFLDTL Y AH+TA+DAL  GLP+LT  G +FA RV  SLLR AG  +  L+V GQ  +E  AV+L  +P+  + L R R+       P+FDT   T+ L  A+  M D+H
Sbjct:  711 VAANLRREGEARGLDPGRLVFAGPIPHAEHLARHRLADLFLDTLPYNAHTTASDALWAGLPVLTRRGTTFAGRVAASLLRAAGLPE--LIVDGQDTYEAAAVDLARSPQRLRGL-RERLMRNRQSCPLFDTPRFTRHLEAAYRAMWDIH 856          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5930.16471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LC82_9PHAE5.790e-8578.53GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQ40_ECTSI1.710e-8376.96UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A8J2SV09_9STRA4.410e-3251.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W2IRW4_PHYPR8.720e-3149.34Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
W2PYQ7_PHYPN8.520e-3049.34Uncharacterized protein (Fragment) n=13 Tax=Phytop... [more]
A0A6A3NSD3_9STRA2.160e-2950.00Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A833SY49_PHYIN5.500e-2946.71Glycosyl transferase family 41 n=1 Tax=Phytophthor... [more]
A0A0F2L101_9PROT1.430e-2846.31Uncharacterized protein n=1 Tax=Azospirillum thiop... [more]
A0A2U1XJ60_9PROT1.430e-2847.65Uncharacterized protein n=4 Tax=Azospirillum TaxID... [more]
A0A2U1YEK7_9PROT1.950e-2846.98Protein O-GlcNAc transferase n=7 Tax=Azospirillum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5930contigEcto-sp13_S_contig5930:28..791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score269.6
Seed ortholog evalue9.3e-70
Seed eggNOG ortholog2880.D7FQ40
Model size486
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41
Ec32 orthologEc-01_007580.1
Cds size486
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.5188553-CDS-Ecto-sp13_S_contig5930:27..2501681463824.5188553-CDS-Ecto-sp13_S_contig5930:27..250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5930 28..250 +
1681463824.5327334-CDS-Ecto-sp13_S_contig5930:435..6001681463824.5327334-CDS-Ecto-sp13_S_contig5930:435..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5930 436..600 +
1681463824.5424-CDS-Ecto-sp13_S_contig5930:693..7911681463824.5424-CDS-Ecto-sp13_S_contig5930:693..791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5930 694..791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5930.16471.1prot_Ecto-sp13_S_contig5930.16471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5930 28..791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5930.16471.1

>prot_Ecto-sp13_S_contig5930.16471.1 ID=prot_Ecto-sp13_S_contig5930.16471.1|Name=mRNA_Ecto-sp13_S_contig5930.16471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MADKQRAAIRTRLRQEAESQGIDGGRIVWAKWVSKSEHLSRHALADLFLD
TLTYGAHSTATDALAGGLPLLTLAGASFASRVGISLLRNAGPAQSALLVA
GQREFEDLAVNLVYTPRGRKVLHRLRVSLTEPPLPIFDTEAITKDLNRAF
MLMSDMHDIRKV
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mRNA from alignment at Ecto-sp13_S_contig5930:28..791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5930.16471.1 ID=mRNA_Ecto-sp13_S_contig5930.16471.1|Name=mRNA_Ecto-sp13_S_contig5930.16471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5930:28..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGATAAACAGAGAGCAGCCATACGCACCCGCCTACGGCAAGAAGC GGAGAGTCAAGGTATTGACGGAGGCCGCATAGTGTGGGCCAAATGGGTGT CAAAATCAGAGCATCTATCGCGGCATGCCTTGGCCGACCTGTTTCTGGAC ACCTTGACGTACGGCGCACACTCGACGGCAACGGACGCTCTGGCAGGGGG GCTGCCACTTTTAACCCTTGCTGGTGCGATACCGCCGTTGTTGTGGCATG ATTGCTTTGTGGTAGGCGGGAGTACGGGTGATACCACCTGTGCTTCGAGT GGAAGTATATCACATTCGCGTTACTTAACCCCCCCCCCGCGCGCCATTTC ACGTCACAATAAATCTGCACGATGGCATTCATTTCGATGTCTTCGTCCCG CCATTTAGGGGCATCCTTCGCATCCAGAGTAGGGATCTCCCTGCTGCGCA ACGCCGGCCCCGCGCAAAGCGCCCTACTGGTGGCCGGTCAGCGAGAGTTC GAGGATTTGGCCGTCAACCTCGTCTATACTCCACGCGGCCGGAAAGTTCT TCATAGGTTACGGGTATCACTTAGTTGGGGGTATAAGACAGATCGTCGTC GCTCCCGGCTAGGTGAAACGGGAAAGAGTGCAGGGGGAGAAAAAGAGAGG GCAGGAGGTGGAGGAGCAGAGCCTCCGCTTCCGATTTTCGACACAGAAGC AATCACCAAGGACTTGAATCGGGCGTTCATGCTCATGTCCGATATGCACG ACATACGGAAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5930:28..791+

>mRNA_Ecto-sp13_S_contig5930.16471.1 ID=mRNA_Ecto-sp13_S_contig5930.16471.1|Name=mRNA_Ecto-sp13_S_contig5930.16471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5930:28..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGATAAACAGAGAGCAGCCATACGCACCCGCCTACGGCAAGAAGC
GGAGAGTCAAGGTATTGACGGAGGCCGCATAGTGTGGGCCAAATGGGTGT
CAAAATCAGAGCATCTATCGCGGCATGCCTTGGCCGACCTGTTTCTGGAC
ACCTTGACGTACGGCGCACACTCGACGGCAACGGACGCTCTGGCAGGGGG
GCTGCCACTTTTAACCCTTGCTGGGGCATCCTTCGCATCCAGAGTAGGGA
TCTCCCTGCTGCGCAACGCCGGCCCCGCGCAAAGCGCCCTACTGGTGGCC
GGTCAGCGAGAGTTCGAGGATTTGGCCGTCAACCTCGTCTATACTCCACG
CGGCCGGAAAGTTCTTCATAGGTTACGGGTATCACTTACAGAGCCTCCGC
TTCCGATTTTCGACACAGAAGCAATCACCAAGGACTTGAATCGGGCGTTC
ATGCTCATGTCCGATATGCACGACATACGGAAGGTT
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