mRNA_Ecto-sp13_S_contig59287.16466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.480e-43 Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQ R
Sbjct: 455 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQFR 539
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: D7FUX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX8_ECTSI) HSP 1 Score: 149 bits (377), Expect = 4.310e-42 Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
RYIAQGKLE ARSMARRVLTLTLACSGFLATSLLCLSGVIPR FTSDPEVLKRLHQLLPLLA QQPLVALTLVAEGLLVGAGQ R
Sbjct: 232 RYIAQGKLENARSMARRVLTLTLACSGFLATSLLCLSGVIPRCFTSDPEVLKRLHQLLPLLAVQQPLVALTLVAEGLLVGAGQFR 316
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A835YXE7_9STRA (Mate-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.690e-16 Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
RY+ +G+L AR+MA RV+ LT+A L +L G +P FT DP + R+ L+PLLA QQPLVA TL+ EGLLVGA Q R
Sbjct: 289 RYLGRGELRAARAMAARVVALTVASGALLGAALAAARGALPAAFTRDPALAARIGALVPLLALQQPLVAATLLMEGLLVGAQQFR 373
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A6G8Q8A3_9ACTN (MATE family efflux transporter n=1 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8Q8A3_9ACTN) HSP 1 Score: 61.2 bits (147), Expect = 7.930e-9 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
R + G + A + ARR++ ++A G +LL +G+IPR FT D EV++R +L PL A QP+ A +G+L+GA R
Sbjct: 296 RSLGAGDADGAYAAARRMIFWSVAVGGIFCLALLAGTGIIPRAFTGDAEVIERARELWPLFALMQPVGAAVFALDGILIGASDTR 380
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: UPI001E4E03A5 (MATE family efflux transporter n=1 Tax=Brevibacterium sp. CCUG 69071 TaxID=2052937 RepID=UPI001E4E03A5) HSP 1 Score: 53.1 bits (126), Expect = 5.600e-6 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 7 IAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
+ G + ++ RR+ + + LL SG+IPRGF+SDP+V+ L LLP+LA P+ V +G+L+GA R
Sbjct: 291 LGAGNTDAVAAINRRLCLWGIVFGVIVGVILLAGSGIIPRGFSSDPDVITVLAGLLPILALSMPIAGYVFVLDGVLMGAEDAR 373
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J4BB24_9CHLO (Protein DETOXIFICATION n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BB24_9CHLO) HSP 1 Score: 52.8 bits (125), Expect = 7.960e-6 Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
R I G + AR +A R+ +L+L LA L ++P F+SDPEVL+ + L P++A QP+ L + +G+L GAG R
Sbjct: 496 RDIGAGSVAGARQVASRISSLSLGLGLMLAVGLASSWRLLPGLFSSDPEVLRLVTALFPVVAATQPITVLAMAWDGILYGAGGFR 580
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J3T756_9ACTN (Putative DNA-damage-inducible protein F n=1 Tax=Planosporangium mesophilum TaxID=689768 RepID=A0A8J3T756_9ACTN) HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5 Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 7 IAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVRTM 261
+ G+ E A+++ARR+ + L A + +GV+P+ FTSDP+V + + P A PL + +G+L+GAG VR M
Sbjct: 294 LGAGEDEQAKALARRITVIGLVSGAVFAAVIGAGAGVLPKLFTSDPQVFAQAMRAWPWFAGMLPLAGVVFALDGVLIGAGDVRYM 378
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J4GU24_9CHLO (Protein DETOXIFICATION n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GU24_9CHLO) HSP 1 Score: 52.0 bits (123), Expect = 1.480e-5 Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
R I G + AR +A RV +L+L LA +L ++P F+SDPEVL+ + L P++A QP+ L + +G+L GAG R
Sbjct: 484 RDIGAGSVAGAREVAARVSSLSLGLGLVLAGALASGWRLLPGIFSSDPEVLRLVTGLFPVIAAMQPITVLAMAWDGILYGAGGFR 568
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: D8TQI0_VOLCA (Protein DETOXIFICATION n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQI0_VOLCA) HSP 1 Score: 52.0 bits (123), Expect = 1.500e-5 Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
R + G + AR +A RV +L++ LA L +P F+SDPEVL+ + L P++A QP+ L + +G+L GAG R
Sbjct: 568 RDLGSGSVSGARMVAGRVGSLSVGLGLLLAGGLAACGAQLPGVFSSDPEVLRLVGALFPVIAATQPITVLAMAWDGILYGAGGFR 652
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A7J7Q836_9CHLO (Protein DETOXIFICATION n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q836_9CHLO) HSP 1 Score: 51.2 bits (121), Expect = 2.750e-5 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAG 246
R A G+L+ AR + +TL ++ L L ++P FT D V + QL+P++AF QPL AL V +G+L GAG
Sbjct: 387 RSTAAGELQHARKVVATAITLAVSLGLLLTAILGSTMHLLPELFTQDASVRQLAQQLMPIVAFTQPLNALAFVMDGVLYGAG 468 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59287.16466.1 >prot_Ecto-sp13_S_contig59287.16466.1 ID=prot_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVback to top mRNA from alignment at Ecto-sp13_S_contig59287:510..806- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59287.16466.1 ID=mRNA_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59287:510..806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59287:510..806- >mRNA_Ecto-sp13_S_contig59287.16466.1 ID=mRNA_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59287:510..806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |