mRNA_Ecto-sp13_S_contig59287.16466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59287.16466.1
Unique NamemRNA_Ecto-sp13_S_contig59287.16466.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.480e-43
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQ R
Sbjct:  455 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQFR 539          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: D7FUX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX8_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.310e-42
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            RYIAQGKLE ARSMARRVLTLTLACSGFLATSLLCLSGVIPR FTSDPEVLKRLHQLLPLLA QQPLVALTLVAEGLLVGAGQ R
Sbjct:  232 RYIAQGKLENARSMARRVLTLTLACSGFLATSLLCLSGVIPRCFTSDPEVLKRLHQLLPLLAVQQPLVALTLVAEGLLVGAGQFR 316          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A835YXE7_9STRA (Mate-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.690e-16
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            RY+ +G+L  AR+MA RV+ LT+A    L  +L    G +P  FT DP +  R+  L+PLLA QQPLVA TL+ EGLLVGA Q R
Sbjct:  289 RYLGRGELRAARAMAARVVALTVASGALLGAALAAARGALPAAFTRDPALAARIGALVPLLALQQPLVAATLLMEGLLVGAQQFR 373          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A6G8Q8A3_9ACTN (MATE family efflux transporter n=1 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8Q8A3_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 7.930e-9
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            R +  G  + A + ARR++  ++A  G    +LL  +G+IPR FT D EV++R  +L PL A  QP+ A     +G+L+GA   R
Sbjct:  296 RSLGAGDADGAYAAARRMIFWSVAVGGIFCLALLAGTGIIPRAFTGDAEVIERARELWPLFALMQPVGAAVFALDGILIGASDTR 380          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: UPI001E4E03A5 (MATE family efflux transporter n=1 Tax=Brevibacterium sp. CCUG 69071 TaxID=2052937 RepID=UPI001E4E03A5)

HSP 1 Score: 53.1 bits (126), Expect = 5.600e-6
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query:    7 IAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            +  G  +   ++ RR+    +     +   LL  SG+IPRGF+SDP+V+  L  LLP+LA   P+     V +G+L+GA   R
Sbjct:  291 LGAGNTDAVAAINRRLCLWGIVFGVIVGVILLAGSGIIPRGFSSDPDVITVLAGLLPILALSMPIAGYVFVLDGVLMGAEDAR 373          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J4BB24_9CHLO (Protein DETOXIFICATION n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BB24_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 7.960e-6
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            R I  G +  AR +A R+ +L+L     LA  L     ++P  F+SDPEVL+ +  L P++A  QP+  L +  +G+L GAG  R
Sbjct:  496 RDIGAGSVAGARQVASRISSLSLGLGLMLAVGLASSWRLLPGLFSSDPEVLRLVTALFPVVAATQPITVLAMAWDGILYGAGGFR 580          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J3T756_9ACTN (Putative DNA-damage-inducible protein F n=1 Tax=Planosporangium mesophilum TaxID=689768 RepID=A0A8J3T756_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    7 IAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVRTM 261
            +  G+ E A+++ARR+  + L      A  +   +GV+P+ FTSDP+V  +  +  P  A   PL  +    +G+L+GAG VR M
Sbjct:  294 LGAGEDEQAKALARRITVIGLVSGAVFAAVIGAGAGVLPKLFTSDPQVFAQAMRAWPWFAGMLPLAGVVFALDGVLIGAGDVRYM 378          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A8J4GU24_9CHLO (Protein DETOXIFICATION n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GU24_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.480e-5
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            R I  G +  AR +A RV +L+L     LA +L     ++P  F+SDPEVL+ +  L P++A  QP+  L +  +G+L GAG  R
Sbjct:  484 RDIGAGSVAGAREVAARVSSLSLGLGLVLAGALASGWRLLPGIFSSDPEVLRLVTGLFPVIAAMQPITVLAMAWDGILYGAGGFR 568          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: D8TQI0_VOLCA (Protein DETOXIFICATION n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQI0_VOLCA)

HSP 1 Score: 52.0 bits (123), Expect = 1.500e-5
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVR 255
            R +  G +  AR +A RV +L++     LA  L      +P  F+SDPEVL+ +  L P++A  QP+  L +  +G+L GAG  R
Sbjct:  568 RDLGSGSVSGARMVAGRVGSLSVGLGLLLAGGLAACGAQLPGVFSSDPEVLRLVGALFPVIAATQPITVLAMAWDGILYGAGGFR 652          
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Match: A0A7J7Q836_9CHLO (Protein DETOXIFICATION n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q836_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 2.750e-5
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAG 246
            R  A G+L+ AR +    +TL ++    L   L     ++P  FT D  V +   QL+P++AF QPL AL  V +G+L GAG
Sbjct:  387 RSTAAGELQHARKVVATAITLAVSLGLLLTAILGSTMHLLPELFTQDASVRQLAQQLMPIVAFTQPLNALAFVMDGVLYGAG 468          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59287.16466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JVE7_9PHAE2.480e-4398.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUX8_ECTSI4.310e-4295.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXE7_9STRA3.690e-1651.76Mate-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6G8Q8A3_9ACTN7.930e-937.65MATE family efflux transporter n=1 Tax=Rubrobacter... [more]
UPI001E4E03A55.600e-634.94MATE family efflux transporter n=1 Tax=Brevibacter... [more]
A0A8J4BB24_9CHLO7.960e-637.65Protein DETOXIFICATION n=1 Tax=Volvox africanus Ta... [more]
A0A8J3T756_9ACTN1.040e-534.12Putative DNA-damage-inducible protein F n=1 Tax=Pl... [more]
A0A8J4GU24_9CHLO1.480e-538.82Protein DETOXIFICATION n=2 Tax=Volvox reticuliferu... [more]
D8TQI0_VOLCA1.500e-536.47Protein DETOXIFICATION n=1 Tax=Volvox carteri f. n... [more]
A0A7J7Q836_9CHLO2.750e-537.80Protein DETOXIFICATION n=1 Tax=Scenedesmus sp. NRE... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59287contigEcto-sp13_S_contig59287:510..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.0
Seed ortholog evalue3e-34
Seed eggNOG ortholog2880.D7FUX8
Model size297
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
Ec32 ortholog descriptionMulti antimicrobial extrusion protein
Ec32 orthologEc-01_008580.1
Cds size297
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.8195527-CDS-Ecto-sp13_S_contig59287:509..8061681463823.8195527-CDS-Ecto-sp13_S_contig59287:509..806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59287 510..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59287.16466.1prot_Ecto-sp13_S_contig59287.16466.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59287 510..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59287.16466.1

>prot_Ecto-sp13_S_contig59287.16466.1 ID=prot_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEV
LKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQVRTMMLWGVILSCLFA
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mRNA from alignment at Ecto-sp13_S_contig59287:510..806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59287.16466.1 ID=mRNA_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59287:510..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACATAGCTCAGGGTAAGCTTGAGACCGCACGATCGATGGCGCGGCG TGTCCTCACCCTCACACTGGCGTGCAGCGGCTTCCTGGCGACGTCGCTCC TGTGCCTGAGCGGGGTGATCCCTCGCGGCTTCACCTCCGACCCGGAGGTG CTCAAGAGGCTGCACCAGCTGCTGCCCCTCCTCGCCTTCCAGCAGCCGCT GGTCGCCCTGACGCTGGTCGCAGAGGGCCTCCTTGTAGGAGCCGGGCAGG TGAGAACAATGATGCTGTGGGGAGTTATATTGTCGTGTCTTTTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59287:510..806-

>mRNA_Ecto-sp13_S_contig59287.16466.1 ID=mRNA_Ecto-sp13_S_contig59287.16466.1|Name=mRNA_Ecto-sp13_S_contig59287.16466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59287:510..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACATAGCTCAGGGTAAGCTTGAGACCGCACGATCGATGGCGCGGCG
TGTCCTCACCCTCACACTGGCGTGCAGCGGCTTCCTGGCGACGTCGCTCC
TGTGCCTGAGCGGGGTGATCCCTCGCGGCTTCACCTCCGACCCGGAGGTG
CTCAAGAGGCTGCACCAGCTGCTGCCCCTCCTCGCCTTCCAGCAGCCGCT
GGTCGCCCTGACGCTGGTCGCAGAGGGCCTCCTTGTAGGAGCCGGGCAGG
TGAGAACAATGATGCTGTGGGGAGTTATATTGTCGTGTCTTTTTGCG
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