prot_Ecto-sp13_S_contig59275.16463.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig59275.16463.1
Unique Nameprot_Ecto-sp13_S_contig59275.16463.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.970e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +GADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV
Sbjct:  180 AGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 236          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-25
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +GADGF+VVDLLPDEA DFVTKCRA++LSF+PLVSPTTTDDR+PYV SAAD+FVYCV
Sbjct:  196 AGADGFIVVDLLPDEAGDFVTKCRANQLSFIPLVSPTTTDDRLPYVTSAADTFVYCV 252          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI)

HSP 1 Score: 101 bits (251), Expect = 1.280e-23
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +G DGF+VVDLLPDEA  FV+KCR ++LSF+PLVSPTTTDDRMPYV S+ADSFVYCV
Sbjct:   87 AGGDGFIVVDLLPDEAQSFVSKCRKNQLSFIPLVSPTTTDDRMPYVISSADSFVYCV 143          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.410e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +G DGF+VVDLLPD+AHDF++KC+   LSF+PLV+PTTTDDR+P++AS  DSFVYCV
Sbjct:  152 NGVDGFLVVDLLPDDAHDFISKCQEYHLSFIPLVTPTTTDDRIPFIASTTDSFVYCV 208          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A6H5K496_9PHAE (Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K496_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.320e-17
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    4 DGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYC 56
            DGF+ +DL PD+AH+F +KC    LSF+PLV+PTTTD+R+P+VASA DSFVYC
Sbjct:  165 DGFLAIDLPPDDAHNFSSKCYKHHLSFIPLVTPTTTDNRLPFVASATDSFVYC 217          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A7S2UWZ9_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.430e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +G DGF+VVDL P+E   FV  CR  +LSFVPLVSPTTTDDR+ +++ AADSF+YCV
Sbjct:  175 AGVDGFIVVDLPPEEGGLFVNTCREHDLSFVPLVSPTTTDDRISFLSDAADSFLYCV 231          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A2A9HG15_CHLB2 (Tryptophan synthase alpha chain n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HG15_CHLB2)

HSP 1 Score: 79.0 bits (193), Expect = 2.450e-16
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +GADG++VVDL P+EA  F+  CRA +LSFVPLV+PTT D+R+  +AS AD+F+YCV
Sbjct:  122 AGADGWIVVDLPPEEAGSFLQACRAHDLSFVPLVAPTTRDERITRIASVADAFLYCV 178          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A3A0FK17_9BACT (Tryptophan synthase alpha chain n=2 Tax=Bacteria TaxID=2 RepID=A0A3A0FK17_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-16
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +GADGF+VVDL P+EA  F+  CR +++SFVPLV+PTTT  R+  +A+AAD+F+YCV
Sbjct:  115 AGADGFIVVDLPPEEAGSFLAACRGADMSFVPLVAPTTTGARVEKLAAAADAFLYCV 171          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A7S4DAV4_HETAK (Tryptophan synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    2 GADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            G DGF++VDL P+   + + KCR   LSFVPL+SPTTTD+R+ ++A AADSF+YCV
Sbjct:  170 GVDGFIIVDLPPEYGEEIINKCREYGLSFVPLISPTTTDERIAFLADAADSFLYCV 225          
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A6I4ZHM3_9CHLR (Tryptophan synthase alpha chain n=6 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZHM3_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 1.380e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 57
            +GADGF+VVDL PDEA  F   C A+ +SFVPLV+PTT ++RM  VA+ ADSF+YCV
Sbjct:  122 AGADGFIVVDLPPDEAGTFRGACAANGVSFVPLVAPTTAEERMGEVAAVADSFIYCV 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB1_ECTSI1.970e-2998.25Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YTN0_9STRA1.220e-2584.21Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
H6WB94_VAULI1.280e-2378.95Tryptophan synthase n=1 Tax=Vaucheria litorea TaxI... [more]
D8LQU8_ECTSI7.410e-2270.18Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K496_9PHAE2.320e-1766.04Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S2UWZ9_9STRA7.430e-1764.91Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa ... [more]
A0A2A9HG15_CHLB22.450e-1661.40Tryptophan synthase alpha chain n=2 Tax=Chloroflex... [more]
A0A3A0FK17_9BACT8.530e-1659.65Tryptophan synthase alpha chain n=2 Tax=Bacteria T... [more]
A0A7S4DAV4_HETAK1.250e-1558.93Tryptophan synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A6I4ZHM3_9CHLR1.380e-1563.16Tryptophan synthase alpha chain n=6 Tax=Dehalococc... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 1..57
e-value: 5.7E-17
score: 63.2
IPR002028Tryptophan synthase, alpha chainPFAMPF00290Trp_syntAcoord: 2..57
e-value: 2.4E-14
score: 52.8
NoneNo IPR availablePANTHERPTHR43406FAMILY NOT NAMEDcoord: 2..57
NoneNo IPR availablePANTHERPTHR43406:SF1TRYPTOPHAN SYNTHASE ALPHA CHAINcoord: 2..57
IPR011060Ribulose-phosphate binding barrelSUPERFAMILY51366Ribulose-phoshate binding barrelcoord: 2..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59275contigEcto-sp13_S_contig59275:546..716 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59275.16463.1mRNA_Ecto-sp13_S_contig59275.16463.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig59275 546..716 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig59275.16463.1 ID=prot_Ecto-sp13_S_contig59275.16463.1|Name=mRNA_Ecto-sp13_S_contig59275.16463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAA
DSFVYCV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR002028Trp_synthase_suA
IPR011060RibuloseP-bd_barrel