mRNA_Ecto-sp13_S_contig59275.16463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59275.16463.1
Unique NamemRNA_Ecto-sp13_S_contig59275.16463.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.970e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +GADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV
Sbjct:  180 AGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 236
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-25
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +GADGF+VVDLLPDEA DFVTKCRA++LSF+PLVSPTTTDDR+PYV SAAD+FVYCV
Sbjct:  196 AGADGFIVVDLLPDEAGDFVTKCRANQLSFIPLVSPTTTDDRLPYVTSAADTFVYCV 252
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI)

HSP 1 Score: 101 bits (251), Expect = 1.280e-23
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +G DGF+VVDLLPDEA  FV+KCR ++LSF+PLVSPTTTDDRMPYV S+ADSFVYCV
Sbjct:   87 AGGDGFIVVDLLPDEAQSFVSKCRKNQLSFIPLVSPTTTDDRMPYVISSADSFVYCV 143
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.410e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +G DGF+VVDLLPD+AHDF++KC+   LSF+PLV+PTTTDDR+P++AS  DSFVYCV
Sbjct:  152 NGVDGFLVVDLLPDDAHDFISKCQEYHLSFIPLVTPTTTDDRIPFIASTTDSFVYCV 208
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A6H5K496_9PHAE (Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K496_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.320e-17
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   10 DGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYC 168
            DGF+ +DL PD+AH+F +KC    LSF+PLV+PTTTD+R+P+VASA DSFVYC
Sbjct:  165 DGFLAIDLPPDDAHNFSSKCYKHHLSFIPLVTPTTTDNRLPFVASATDSFVYC 217
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A7S2UWZ9_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.430e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +G DGF+VVDL P+E   FV  CR  +LSFVPLVSPTTTDDR+ +++ AADSF+YCV
Sbjct:  175 AGVDGFIVVDLPPEEGGLFVNTCREHDLSFVPLVSPTTTDDRISFLSDAADSFLYCV 231
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A2A9HG15_CHLB2 (Tryptophan synthase alpha chain n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HG15_CHLB2)

HSP 1 Score: 79.0 bits (193), Expect = 2.450e-16
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +GADG++VVDL P+EA  F+  CRA +LSFVPLV+PTT D+R+  +AS AD+F+YCV
Sbjct:  122 AGADGWIVVDLPPEEAGSFLQACRAHDLSFVPLVAPTTRDERITRIASVADAFLYCV 178
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A3A0FK17_9BACT (Tryptophan synthase alpha chain n=2 Tax=Bacteria TaxID=2 RepID=A0A3A0FK17_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-16
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +GADGF+VVDL P+EA  F+  CR +++SFVPLV+PTTT  R+  +A+AAD+F+YCV
Sbjct:  115 AGADGFIVVDLPPEEAGSFLAACRGADMSFVPLVAPTTTGARVEKLAAAADAFLYCV 171
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A7S4DAV4_HETAK (Tryptophan synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 GADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            G DGF++VDL P+   + + KCR   LSFVPL+SPTTTD+R+ ++A AADSF+YCV
Sbjct:  170 GVDGFIIVDLPPEYGEEIINKCREYGLSFVPLISPTTTDERIAFLADAADSFLYCV 225
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BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Match: A0A6I4ZHM3_9CHLR (Tryptophan synthase alpha chain n=6 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZHM3_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 1.380e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYCV 171
            +GADGF+VVDL PDEA  F   C A+ +SFVPLV+PTT ++RM  VA+ ADSF+YCV
Sbjct:  122 AGADGFIVVDLPPDEAGTFRGACAANGVSFVPLVAPTTAEERMGEVAAVADSFIYCV 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59275.16463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB1_ECTSI1.970e-2998.25Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YTN0_9STRA1.220e-2584.21Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
H6WB94_VAULI1.280e-2378.95Tryptophan synthase n=1 Tax=Vaucheria litorea TaxI... [more]
D8LQU8_ECTSI7.410e-2270.18Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K496_9PHAE2.320e-1766.04Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S2UWZ9_9STRA7.430e-1764.91Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa ... [more]
A0A2A9HG15_CHLB22.450e-1661.40Tryptophan synthase alpha chain n=2 Tax=Chloroflex... [more]
A0A3A0FK17_9BACT8.530e-1659.65Tryptophan synthase alpha chain n=2 Tax=Bacteria T... [more]
A0A7S4DAV4_HETAK1.250e-1558.93Tryptophan synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A6I4ZHM3_9CHLR1.380e-1563.16Tryptophan synthase alpha chain n=6 Tax=Dehalococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59275contigEcto-sp13_S_contig59275:546..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.6
Seed ortholog evalue9.3e-25
Seed eggNOG ortholog2880.D8LLB1
Preferred nameTRP5
Model size171
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01695,ko:K01696,ko:K10882,ko:K13222
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko00402,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map00402,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009606,GO:0009607,GO:0009617,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010033,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016832,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0033036,GO:0033037,GO:0033554,GO:0033984,GO:0034641,GO:0034754,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0065007,GO:0065008,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0098542,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.tryptophan synthase activity
EggNOG OGsCOG0133@1,COG0159@1,KOG1395@2759,KOG4175@2759
Ec32 ortholog descriptionTryptophan synthase (alpha / beta chains)
Ec32 orthologEc-24_002360.1
EC4.1.2.8,4.2.1.20
Cds size171
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.5531685-CDS-Ecto-sp13_S_contig59275:545..7161681463823.5531685-CDS-Ecto-sp13_S_contig59275:545..716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59275 546..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59275.16463.1prot_Ecto-sp13_S_contig59275.16463.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59275 546..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59275.16463.1

>prot_Ecto-sp13_S_contig59275.16463.1 ID=prot_Ecto-sp13_S_contig59275.16463.1|Name=mRNA_Ecto-sp13_S_contig59275.16463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
SGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAA
DSFVYCV
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mRNA from alignment at Ecto-sp13_S_contig59275:546..716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59275.16463.1 ID=mRNA_Ecto-sp13_S_contig59275.16463.1|Name=mRNA_Ecto-sp13_S_contig59275.16463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59275:546..716+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCGCCGATGGGTTCGTGGTTGTGGACCTTCTCCCCGACGAGGCCCA
CGACTTCGTCACGAAGTGCCGCGCCAGCGAGCTCTCCTTCGTGCCCCTCG
TGTCTCCCACCACCACGGACGACCGCATGCCGTACGTCGCCTCCGCCGCG
GACTCGTTCGTGTACTGCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59275:546..716+

>mRNA_Ecto-sp13_S_contig59275.16463.1 ID=mRNA_Ecto-sp13_S_contig59275.16463.1|Name=mRNA_Ecto-sp13_S_contig59275.16463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59275:546..716+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCGCCGATGGGTTCGTGGTTGTGGACCTTCTCCCCGACGAGGCCCA
CGACTTCGTCACGAAGTGCCGCGCCAGCGAGCTCTCCTTCGTGCCCCTCG
TGTCTCCCACCACCACGGACGACCGCATGCCGTACGTCGCCTCCGCCGCG
GACTCGTTCGTGTACTGCGTT
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