mRNA_Ecto-sp13_S_contig59248.16460.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59248.16460.1
Unique NamemRNA_Ecto-sp13_S_contig59248.16460.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Match: UPI0014245C14 (tetratricopeptide repeat protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014245C14)

HSP 1 Score: 187 bits (474), Expect = 1.350e-51
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 MLLFLALSGETAVGRALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL 300
            MLLFLALSGE++VG ALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQ LRPGDKVAALVGRGHAYFARDDYDEAIADYS+ALELGEVDVDLL
Sbjct:   10 MLLFLALSGESSVGHALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQALRPGDKVAALVGRGHAYFARDDYDEAIADYSRALELGEVDVDLL 109
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BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Match: A0A7C7PNS3_9PROT (Tetratricopeptide repeat protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PNS3_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 3.660e-17
Identity = 49/92 (53.26%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   31 TAVGRALAEEAADEKPE--VCREGEGALTFGLDDVAISTLTHCLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL 300
            TA    L   A  + PE  VC EG+GAL FGL DVA++ LT CL+  GL    +   L  RGHAY ARDDY+EA+ADYS+AL LG  D +LL
Sbjct:   17 TAAAALLPLPALGQAPETGVCAEGQGALDFGLPDVAVTALTRCLAEGGLNTRKRSEILAARGHAYLARDDYEEAVADYSEALALGGDDTNLL 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0014245C141.350e-5195.00tetratricopeptide repeat protein n=1 Tax=Pelagibiu... [more]
A0A7C7PNS3_9PROT3.660e-1753.26Tetratricopeptide repeat protein n=1 Tax=Kiloniell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59248contigEcto-sp13_S_contig59248:166..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size678
Hectar predicted targeting categorysignal peptide
Exons1
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.3703825-CDS-Ecto-sp13_S_contig59248:165..8431681463823.3703825-CDS-Ecto-sp13_S_contig59248:165..843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59248 166..843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59248.16460.1prot_Ecto-sp13_S_contig59248.16460.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59248 166..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59248.16460.1

>prot_Ecto-sp13_S_contig59248.16460.1 ID=prot_Ecto-sp13_S_contig59248.16460.1|Name=mRNA_Ecto-sp13_S_contig59248.16460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
MLLFLALSGETAVGRALAEEAADEKPEVCREGEGALTFGLDDVAISTLTH
CLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL
VHRGRAHYYEDRNDEALADFDRALALDGENDEAFYFRGRVFHEAEQHDKA
AADFASVIRLSPESNSAYYYQGRSLAALERYAEATASYDKAIELDPFDNW
AFNSRGNVYLDLDDYERALLDYDQVI
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mRNA from alignment at Ecto-sp13_S_contig59248:166..843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59248.16460.1 ID=mRNA_Ecto-sp13_S_contig59248.16460.1|Name=mRNA_Ecto-sp13_S_contig59248.16460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59248:166..843+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTTTTTCTTGCGCTGTCAGGGGAGACCGCGGTCGGTCGCGCCCT
GGCCGAAGAGGCAGCCGACGAAAAGCCCGAAGTCTGCAGGGAGGGCGAAG
GAGCCCTGACCTTTGGCCTCGATGACGTTGCGATATCGACGCTGACCCAC
TGCCTGAGCCTTCAGGGTTTGCGCCCGGGCGACAAGGTGGCGGCGCTGGT
CGGCCGCGGCCATGCCTATTTCGCCCGGGACGACTACGACGAGGCGATTG
CCGACTACAGCCAGGCGTTGGAGCTGGGCGAGGTCGACGTCGACCTGTTG
GTCCACCGCGGCCGCGCCCACTACTACGAGGATCGCAACGACGAGGCCCT
GGCGGACTTCGACCGCGCCCTCGCCCTGGACGGGGAGAATGACGAAGCGT
TCTACTTCCGCGGCCGCGTGTTCCACGAAGCGGAGCAGCACGACAAGGCT
GCTGCCGATTTCGCTTCGGTCATACGGCTGAGCCCGGAGTCCAACAGCGC
CTACTACTATCAGGGCCGTAGCCTGGCCGCCCTGGAACGTTACGCCGAAG
CCACTGCCAGCTACGACAAGGCAATCGAACTGGACCCCTTTGACAATTGG
GCATTCAACAGCCGGGGAAATGTCTACCTGGATCTGGACGACTACGAGCG
GGCGCTGCTGGATTATGACCAGGTGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59248:166..843+

>mRNA_Ecto-sp13_S_contig59248.16460.1 ID=mRNA_Ecto-sp13_S_contig59248.16460.1|Name=mRNA_Ecto-sp13_S_contig59248.16460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59248:166..843+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTTTTTCTTGCGCTGTCAGGGGAGACCGCGGTCGGTCGCGCCCT
GGCCGAAGAGGCAGCCGACGAAAAGCCCGAAGTCTGCAGGGAGGGCGAAG
GAGCCCTGACCTTTGGCCTCGATGACGTTGCGATATCGACGCTGACCCAC
TGCCTGAGCCTTCAGGGTTTGCGCCCGGGCGACAAGGTGGCGGCGCTGGT
CGGCCGCGGCCATGCCTATTTCGCCCGGGACGACTACGACGAGGCGATTG
CCGACTACAGCCAGGCGTTGGAGCTGGGCGAGGTCGACGTCGACCTGTTG
GTCCACCGCGGCCGCGCCCACTACTACGAGGATCGCAACGACGAGGCCCT
GGCGGACTTCGACCGCGCCCTCGCCCTGGACGGGGAGAATGACGAAGCGT
TCTACTTCCGCGGCCGCGTGTTCCACGAAGCGGAGCAGCACGACAAGGCT
GCTGCCGATTTCGCTTCGGTCATACGGCTGAGCCCGGAGTCCAACAGCGC
CTACTACTATCAGGGCCGTAGCCTGGCCGCCCTGGAACGTTACGCCGAAG
CCACTGCCAGCTACGACAAGGCAATCGAACTGGACCCCTTTGACAATTGG
GCATTCAACAGCCGGGGAAATGTCTACCTGGATCTGGACGACTACGAGCG
GGCGCTGCTGGATTATGACCAGGTGATC
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