prot_Ecto-sp13_S_contig59248.16460.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig59248.16460.1
Unique Nameprot_Ecto-sp13_S_contig59248.16460.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length226
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Match: UPI0014245C14 (tetratricopeptide repeat protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014245C14)

HSP 1 Score: 187 bits (474), Expect = 1.350e-51
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0 
Query:    1 MLLFLALSGETAVGRALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL 100
            MLLFLALSGE++VG ALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQ LRPGDKVAALVGRGHAYFARDDYDEAIADYS+ALELGEVDVDLL
Sbjct:   10 MLLFLALSGESSVGHALAEEAADEKPEVCREGEGALTFGLDDVAISTLTHCLSLQALRPGDKVAALVGRGHAYFARDDYDEAIADYSRALELGEVDVDLL 109
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BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Match: A0A7C7PNS3_9PROT (Tetratricopeptide repeat protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PNS3_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 3.660e-17
Identity = 49/92 (53.26%), Postives = 59/92 (64.13%), Query Frame = 0 
Query:   11 TAVGRALAEEAADEKPE--VCREGEGALTFGLDDVAISTLTHCLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL 100
            TA    L   A  + PE  VC EG+GAL FGL DVA++ LT CL+  GL    +   L  RGHAY ARDDY+EA+ADYS+AL LG  D +LL
Sbjct:   17 TAAAALLPLPALGQAPETGVCAEGQGALDFGLPDVAVTALTRCLAEGGLNTRKRSEILAARGHAYLARDDYEEAVADYSEALALGGDDTNLL 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59248.16460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0014245C141.350e-5195.00tetratricopeptide repeat protein n=1 Tax=Pelagibiu... [more]
A0A7C7PNS3_9PROT3.660e-1753.26Tetratricopeptide repeat protein n=1 Tax=Kiloniell... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 131..164
e-value: 0.83
score: 18.7
coord: 199..226
e-value: 210.0
score: 3.4
coord: 165..198
e-value: 6.4E-4
score: 29.0
coord: 97..130
e-value: 8.5E-4
score: 28.6
coord: 63..96
e-value: 6.0E-6
score: 35.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 97..130
score: 9.322
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 165..198
score: 10.915
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 131..164
score: 9.588
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 199..226
score: 6.136
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 63..96
score: 10.915
NoneNo IPR availablePFAMPF13432TPR_16coord: 104..163
e-value: 2.0E-6
score: 28.3
NoneNo IPR availablePFAMPF13414TPR_11coord: 172..212
e-value: 2.4E-7
score: 30.3
NoneNo IPR availablePANTHERPTHR44858FAMILY NOT NAMEDcoord: 16..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..226
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.557
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 39..129
e-value: 1.8E-16
score: 62.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 130..226
e-value: 2.3E-22
score: 81.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 63..226
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 64..92
e-value: 3.2E-8
score: 33.0
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 63..226
score: 41.666

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59248contigEcto-sp13_S_contig59248:166..843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59248.16460.1mRNA_Ecto-sp13_S_contig59248.16460.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig59248 166..843 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig59248.16460.1 ID=prot_Ecto-sp13_S_contig59248.16460.1|Name=mRNA_Ecto-sp13_S_contig59248.16460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
MLLFLALSGETAVGRALAEEAADEKPEVCREGEGALTFGLDDVAISTLTH
CLSLQGLRPGDKVAALVGRGHAYFARDDYDEAIADYSQALELGEVDVDLL
VHRGRAHYYEDRNDEALADFDRALALDGENDEAFYFRGRVFHEAEQHDKA
AADFASVIRLSPESNSAYYYQGRSLAALERYAEATASYDKAIELDPFDNW
AFNSRGNVYLDLDDYERALLDYDQVI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR001440TPR_1
IPR013026TPR-contain_dom