mRNA_Ecto-sp13_S_contig59244.16459.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59244.16459.1
Unique NamemRNA_Ecto-sp13_S_contig59244.16459.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A6H5JZW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.240e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 168
            AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR
Sbjct:  171 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 226          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.120e-24
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 165
            AEAVGAVCDAVGAGPYV+VGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA
Sbjct: 1848 AEAVGAVCDAVGAGPYVMVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 1902          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI001B04F5B1 (1,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=bacterium TaxID=1869227 RepID=UPI001B04F5B1)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 EAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
             A+GA+ DA+G GP  +VGYSMGGR+ALALA RRP ++E    LVLV +SPGL
Sbjct:   79 NALGALLDALGRGPVTLVGYSMGGRLALALALRRPDLVER---LVLVGASPGL 128          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A4R7FR82_9MICO (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Amnibacterium kyonggiense TaxID=595671 RepID=A0A4R7FR82_9MICO)

HSP 1 Score: 50.1 bits (118), Expect = 1.300e-5
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
            A AV A+ DA+G GP VVVG S+GG  A+ALAA RP ++     LV+V +SPGL
Sbjct:   98 ATAVAALLDALGTGPQVVVGQSLGGLTAIALAADRPDLVAA---LVIVDASPGL 148          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A3A1U257_9MICO (Alpha/beta hydrolase n=1 Tax=Amnibacterium setariae TaxID=2306585 RepID=A0A3A1U257_9MICO)

HSP 1 Score: 49.3 bits (116), Expect = 2.460e-5
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
            A AV  + DA+G GP VVVG S+GG  A+ALAA RP ++     LV+V +SPGL
Sbjct:   98 AHAVAGLLDALGTGPQVVVGQSLGGLTAVALAAERPDLVRA---LVVVDASPGL 148          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A1Q7XYE7_9BACT (AB hydrolase-1 domain-containing protein n=4 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7XYE7_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 3.400e-5
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 168
            AE VG   +A+G  P +VVG+S+GG VA+ALAARRP  + G   LVLV+S   L R
Sbjct:   78 AETVGKFLEALGMDPVLVVGHSLGGAVAIALAARRPETVTG---LVLVASCAKLPR 130          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A538QVF6_9BACT (Alpha/beta hydrolase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A538QVF6_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 3.400e-5
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSS 150
            A+ VG   +A+G GP + VG+S+GG VALALAARRP V+ G   LVL+S+
Sbjct:   80 ADVVGDFVEALGVGPAIAVGHSLGGAVALALAARRPTVVRG---LVLLSA 126          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI0004120656 (2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase n=1 Tax=Alicyclobacillus herbarius TaxID=122960 RepID=UPI0004120656)

HSP 1 Score: 48.5 bits (114), Expect = 4.560e-5
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   19 VCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 165
            V DA+G   +  +GYSMGGRVALALA  RP  + G   L+L SSSPGLA
Sbjct:   80 VMDALGHSRFACLGYSMGGRVALALAVTRPHRLLG---LILESSSPGLA 125          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI00190DAA21 (alpha/beta hydrolase n=1 Tax=Lacisediminihabitans changchengi TaxID=2787634 RepID=UPI00190DAA21)

HSP 1 Score: 48.5 bits (114), Expect = 4.680e-5
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
            A AV +V DA+G GP +VVG S+GG  A+ALAA+RP ++     LV+V  SPGL
Sbjct:  100 AGAVASVLDALGIGPQLVVGQSLGGGTAIALAAQRPDLVRA---LVIVDFSPGL 150          
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A2T2TX03_9BACT (2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase n=1 Tax=Bacteroidetes bacterium QH_2_63_10 TaxID=1919092 RepID=A0A2T2TX03_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 EAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
            EAV  V DA G    V+VGYSMGGRVAL+LA R P  +   G LVL S+SPGL
Sbjct:   67 EAVVEVFDAEGVSSCVLVGYSMGGRVALSLALRHPNRV---GRLVLESASPGL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JZW3_9PHAE4.240e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI5.120e-2498.18Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
UPI001B04F5B11.410e-862.261,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=bac... [more]
A0A4R7FR82_9MICO1.300e-555.56Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
A0A3A1U257_9MICO2.460e-553.70Alpha/beta hydrolase n=1 Tax=Amnibacterium setaria... [more]
A0A1Q7XYE7_9BACT3.400e-553.57AB hydrolase-1 domain-containing protein n=4 Tax=u... [more]
A0A538QVF6_9BACT3.400e-556.00Alpha/beta hydrolase n=1 Tax=Candidatus Rokubacter... [more]
UPI00041206564.560e-559.182-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxy... [more]
UPI00190DAA214.680e-553.70alpha/beta hydrolase n=1 Tax=Lacisediminihabitans ... [more]
A0A2T2TX03_9BACT5.620e-560.382-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59244contigEcto-sp13_S_contig59244:267..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score100.9
Seed ortholog evalue2e-19
Seed eggNOG ortholog2880.D8LMF2
Model size171
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size171
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.340606-CDS-Ecto-sp13_S_contig59244:266..4371681463823.340606-CDS-Ecto-sp13_S_contig59244:266..437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59244 267..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59244.16459.1prot_Ecto-sp13_S_contig59244.16459.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59244 267..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59244.16459.1

>prot_Ecto-sp13_S_contig59244.16459.1 ID=prot_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSS
SPGLAR*
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mRNA from alignment at Ecto-sp13_S_contig59244:267..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59244.16459.1 ID=mRNA_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59244:267..437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGCGGTGGGCGCCGTTTGCGATGCGGTGGGGGCCGGGCCGTACGT GGTGGTGGGGTACTCGATGGGCGGGAGGGTGGCGCTAGCCTTGGCAGCGA GACGACCGCGGGTGATGGAGGGAGGGGGGGGGCTGGTGCTGGTGTCGTCG AGCCCGGGCCTGGCCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59244:267..437+

>mRNA_Ecto-sp13_S_contig59244.16459.1 ID=mRNA_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59244:267..437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGCGGTGGGCGCCGTTTGCGATGCGGTGGGGGCCGGGCCGTACGT
GGTGGTGGGGTACTCGATGGGCGGGAGGGTGGCGCTAGCCTTGGCAGCGA
GACGACCGCGGGTGATGGAGGGAGGGGGGGGGCTGGTGCTGGTGTCGTCG
AGCCCGGGCCTGGCCAGGTAA
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