mRNA_Ecto-sp13_S_contig59244.16459.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A6H5JZW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW3_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.240e-25 Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 168
AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR
Sbjct: 171 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 226
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI) HSP 1 Score: 102 bits (254), Expect = 5.120e-24 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 165
AEAVGAVCDAVGAGPYV+VGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA
Sbjct: 1848 AEAVGAVCDAVGAGPYVMVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 1902
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI001B04F5B1 (1,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=bacterium TaxID=1869227 RepID=UPI001B04F5B1) HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8 Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 4 EAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
A+GA+ DA+G GP +VGYSMGGR+ALALA RRP ++E LVLV +SPGL
Sbjct: 79 NALGALLDALGRGPVTLVGYSMGGRLALALALRRPDLVER---LVLVGASPGL 128
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A4R7FR82_9MICO (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Amnibacterium kyonggiense TaxID=595671 RepID=A0A4R7FR82_9MICO) HSP 1 Score: 50.1 bits (118), Expect = 1.300e-5 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
A AV A+ DA+G GP VVVG S+GG A+ALAA RP ++ LV+V +SPGL
Sbjct: 98 ATAVAALLDALGTGPQVVVGQSLGGLTAIALAADRPDLVAA---LVIVDASPGL 148
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A3A1U257_9MICO (Alpha/beta hydrolase n=1 Tax=Amnibacterium setariae TaxID=2306585 RepID=A0A3A1U257_9MICO) HSP 1 Score: 49.3 bits (116), Expect = 2.460e-5 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
A AV + DA+G GP VVVG S+GG A+ALAA RP ++ LV+V +SPGL
Sbjct: 98 AHAVAGLLDALGTGPQVVVGQSLGGLTAVALAAERPDLVRA---LVVVDASPGL 148
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A1Q7XYE7_9BACT (AB hydrolase-1 domain-containing protein n=4 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7XYE7_9BACT) HSP 1 Score: 48.9 bits (115), Expect = 3.400e-5 Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLAR 168
AE VG +A+G P +VVG+S+GG VA+ALAARRP + G LVLV+S L R
Sbjct: 78 AETVGKFLEALGMDPVLVVGHSLGGAVAIALAARRPETVTG---LVLVASCAKLPR 130
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A538QVF6_9BACT (Alpha/beta hydrolase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A538QVF6_9BACT) HSP 1 Score: 48.9 bits (115), Expect = 3.400e-5 Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSS 150
A+ VG +A+G GP + VG+S+GG VALALAARRP V+ G LVL+S+
Sbjct: 80 ADVVGDFVEALGVGPAIAVGHSLGGAVALALAARRPTVVRG---LVLLSA 126
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI0004120656 (2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase n=1 Tax=Alicyclobacillus herbarius TaxID=122960 RepID=UPI0004120656) HSP 1 Score: 48.5 bits (114), Expect = 4.560e-5 Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1
Query: 19 VCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGLA 165
V DA+G + +GYSMGGRVALALA RP + G L+L SSSPGLA
Sbjct: 80 VMDALGHSRFACLGYSMGGRVALALAVTRPHRLLG---LILESSSPGLA 125
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: UPI00190DAA21 (alpha/beta hydrolase n=1 Tax=Lacisediminihabitans changchengi TaxID=2787634 RepID=UPI00190DAA21) HSP 1 Score: 48.5 bits (114), Expect = 4.680e-5 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
A AV +V DA+G GP +VVG S+GG A+ALAA+RP ++ LV+V SPGL
Sbjct: 100 AGAVASVLDALGIGPQLVVGQSLGGGTAIALAAQRPDLVRA---LVIVDFSPGL 150
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Match: A0A2T2TX03_9BACT (2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase n=1 Tax=Bacteroidetes bacterium QH_2_63_10 TaxID=1919092 RepID=A0A2T2TX03_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5 Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 4 EAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSSPGL 162
EAV V DA G V+VGYSMGGRVAL+LA R P + G LVL S+SPGL
Sbjct: 67 EAVVEVFDAEGVSSCVLVGYSMGGRVALSLALRHPNRV---GRLVLESASPGL 116 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59244.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59244.16459.1 >prot_Ecto-sp13_S_contig59244.16459.1 ID=prot_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp AEAVGAVCDAVGAGPYVVVGYSMGGRVALALAARRPRVMEGGGGLVLVSSback to top mRNA from alignment at Ecto-sp13_S_contig59244:267..437+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59244.16459.1 ID=mRNA_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59244:267..437+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59244:267..437+ >mRNA_Ecto-sp13_S_contig59244.16459.1 ID=mRNA_Ecto-sp13_S_contig59244.16459.1|Name=mRNA_Ecto-sp13_S_contig59244.16459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59244:267..437+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |