mRNA_Ecto-sp13_S_contig5901.16426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5901.16426.1
Unique NamemRNA_Ecto-sp13_S_contig5901.16426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 2.610e-86
Identity = 138/293 (47.10%), Postives = 179/293 (61.09%), Query Frame = 1
Query:    4 DASFLGCFAD-AEDRVFSVSTSSASMTSATCAAFCSDYAYYATQFGAECWCGNNDAYDENGAAVCDMECAGDAGDICGGFFAMSVRERCYSSPTDPTYLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCG--NSGFDEYGESTDCTMECAGDADEICGGFNAMSVQPTTGGDYTNLGCWSD 873
            D+ +LGC++D A+ R+F +  +S  MTS  C   C  Y YY TQ+  +CWCG+N  YD NGA  CDM C+GDA +ICGGF+ MSV E     P DP+YLGC+ D    RIF +   S  MT+  C   C  Y YYGTQ+  +CWCG+N+ YD  G   +C M C GD+ EICGGF +MS     + V P D +Y GC+ D    R+F     S  MT+ FCA+ CSDYA+YGTQY  +CWCG  N+ + E GE   C M C+GD++E CGG+ +MSV      D   LGC+ D
Sbjct:  103 DSGYLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNADYDANGAGECDMACSGDASEICGGFYTMSVYENV--DPVDPSYLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNADYDANGAG-ECDMDCSGDSSEICGGFYSMSVYE--NDVDPVDLSYRGCYSDPADSRIFVEAGSSDGMTAEFCATLCSDYAFYGTQYSTQCWCGDLNARYSENGEGV-CDMPCSGDSEETCGGYYSMSVYAH---DPAYLGCFQD 386          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.310e-80
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 1
Query:  370 FCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMS----------TPAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSGFDEYGESTDCTMECAGDADEICGGFNAMSV 825
            FCA FCA+YAYYGTQ+GEECWCGN SGYDTLGESTDC+  C GDA E CGGFNAMS          TP PV V+ PTD TYLGC++DSQT R+F VTT S  MT AFCA FC++YAYYGTQYGEECWCGNSG+D  GESTDC  +C+GDADE CGGFNAMSV
Sbjct:    3 FCADFCAEYAYYGTQYGEECWCGN-SGYDTLGESTDCSFGCSGDAGETCGGFNAMSVYSTGSDPVETPTPVAVIEPTDPTYLGCYVDSQTDRIFPVTTASDVMTLAFCADFCAEYAYYGTQYGEECWCGNSGYDTLGESTDCNYDCSGDADETCGGFNAMSV 163          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.060e-78
Identity = 137/302 (45.36%), Postives = 174/302 (57.62%), Query Frame = 1
Query:    4 DASFLGCFAD-AEDRVFSVSTSSASMTSATCAAFCSDYAYYATQFGAECWCGNNDAYDENGAAVCDMECAGDAGDICGGFFAMSVRERCYSSPTDPTYLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCG-NSGFDEYGESTDCTMECAGDADEICGGFNAMSVQPTTGGDYTNL---GCWSDPQDSRMM 894
            D+ +LGC++D A+ R+F +  ++  MTS  C   C  Y YY TQ+  +CWCG+N  YD NGA  CDM C+GDA +ICGGF+AMSV    Y +P D  YLGC+ D    RIF +   +  MT+                   ECWCG+N+ YD  GE   C MAC GDA EICGGF AMS     DV  P D +YLGC+ D    R+F +   +  MTS  C   C  Y YYGTQY  +CWCG N+ +D  G   +C M C+GD+ EICGGF +MSV      D  +L   GC+SDP DSR+ 
Sbjct:   73 DSGYLGCYSDPADSRIFDLVATADDMTSEICLGNCGAYQYYGTQYSTQCWCGDNADYDANGAGECDMACSGDASEICGGFYAMSV----YENPDDSGYLGCYSDPADSRIFDLVATADDMTS-------------------ECWCGDNADYDANGEGV-CDMACSGDASEICGGFYAMSVYENPDV-DPVDPSYLGCYADPADSRIFDLVATADDMTSENCLGNCGAYQYYGTQYSTQCWCGDNADYDANGAG-ECDMACSGDSSEICGGFYSMSVYENDDVDAVDLSYRGCYSDPADSRIF 348          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 3.000e-69
Identity = 130/230 (56.52%), Postives = 146/230 (63.48%), Query Frame = 1
Query:  271 SSPTDPT--------YLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMS---------TPAPVD------------------------VVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSG-FDEYGESTDCTMECAGDADEICGGFNAMSVQPT 834
            ++PT P         YLGCF DSQTDR+F V   SGSMT A CAS CADYAYYGTQFG ECWCGNN+ YD  GE+T C M C GD+ +ICGGFNAMS         TP+PV                          V PT+  YLGCF DSQ  RVFSV T SGSMT+A CAS C+DYAYYGTQ+G ECWCGN+  +D YGE+T C M C GD+ E CGGFNAMSV  T
Sbjct:  568 TAPTTPAPVNAGAAGYLGCFGDSQTDRVFSVVVFSGSMTTAICASTCADYAYYGTQFGGECWCGNNADYDVYGEAT-CDMGCTGDSSDICGGFNAMSFYSTGSVVETPSPVPDEVTXXXXXXXXXXXXXXXXXXXXXVVPTEPGYLGCFGDSQADRVFSVVTGSGSMTTAICASTCADYAYYGTQFGGECWCGNNAAYDVYGEAT-CDMGCTGDSSEKCGGFNAMSVYGT 795          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.320e-60
Identity = 123/290 (42.41%), Postives = 163/290 (56.21%), Query Frame = 1
Query:   16 LGCFAD-AEDRVFS-VSTSSASMTSATCAAFCSDYAYYATQFGAECWCGNNDA-YDENG-AAVCDMECAGDAGDICGGFFAMSVRERCYSSPTDPT-----------YLGCFVDSQTDRIFP-VSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGN-NSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFIDSQTGRVFSVT-TDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSGFD--EYGESTDCTMECAGDADEICGGFNAMSV 825
            LGC+ D  EDR+   ++ S  SMT+  C   C    Y+ATQ+G ECWCG+  A Y  +G +A C   CAGDA + CGGF A +V      S   PT            LGC+ D + +RI   ++    SMT   C   C    ++ TQ+G ECWCG+  + Y   GESTDCT AC GDAD+ CGGF+A +          + +T++GC+ D    R+  +  TDS SMT   C + C+   Y+G QYG EC+CG S  D  ++GEST C  EC GD+DE+CGGF AMSV
Sbjct:  221 LGCYEDDREDRIMDDLALSDYSMTTELCEQTCVGNTYFATQYGRECWCGSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPTADESGPLSLGCYEDDRENRIMDDLALSDFSMTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSV 510          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 8.520e-57
Identity = 117/286 (40.91%), Postives = 155/286 (54.20%), Query Frame = 1
Query:    4 DASFLGCF-ADAEDRVFSVSTSSASMTSATCAAFCSDYAYYATQFGAECWCGNNDA-YDENGAA-VCDMECAGDAGDICGGFFAMSVRERCYSSPTDPTYLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGN-NSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAF-------CASFCSDYAYYGTQYGEECWCG-NSGFDEYGESTDCTMECAGDADEICGGFNAMSV 825
            D  +LGC+    +DR+F ++ +S  MT A                   CWCG+ +A YD NGA+  C M CAGDA + CGG ++MSV +     P DP Y GC+ D  T+R+F     S  MTA  CA+ C + A+YGTQ+  ECWCG+ N+ Y   G    C M C G+++E CGG  +M   A        D  YLGCF D   GR+F   + + +MT+         CAS CS  AYYGTQY +ECWCG N+ +   G    C M C G++DE+CGG   MSV
Sbjct:   11 DTDYLGCYYIPTDDRIFWLAATSDDMTKA-------------------CWCGDENADYDANGASNECVMPCAGDASETCGGSYSMSVYQNEVEIPVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGV-CDMPCSGNSEESCGGSYSMDVYAQ-------DPAYLGCFSDPADGRMFVWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQECWCGDNADYAANGFGV-CDMPCTGNSDEMCGGPYTMSV 268          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A6H5L0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.700e-55
Identity = 115/246 (46.75%), Postives = 133/246 (54.07%), Query Frame = 1
Query:  271 SSPTDPT--------YLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMS---------TPAPVDVV-----------------------------------GPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWC------GNSGFDEYGESTDCTMECAGDADEICGGFNAMSVQPT 834
            ++PT P         YLGCF DSQT R+FPV   S SMT A CA  CA+YAYYGTQ+G ECWCGNN+ Y   GE T C M C GD+   CGGFNAMS         TP+PV  V                                   GPT+  YLGCF DSQ  RVF V   SGSMT+A CA  CSDYAYYGTQ+G E          N+ +D YG  T C M C+GDA ++CGG +A+SV  T
Sbjct:   71 TAPTTPVPVNAGAAGYLGCFGDSQTGRVFPVVFGSDSMTTAICADTCAEYAYYGTQYGRECWCGNNADYAVYGEVT-CDMECTGDSSATCGGFNAMSFYSTGLVVETPSPVPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGPTEPGYLGCFGDSQIKRVFPVVKASGSMTTAGCADTCSDYAYYGTQFGREAAVLVLSNKSNAHYDVYGGET-CDMACSGDALDVCGGVDALSVYST 314          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.650e-55
Identity = 110/233 (47.21%), Postives = 131/233 (56.22%), Query Frame = 1
Query:  145 CWCGNNDA-YDENGAAVCDMECAGDAGDICGGFFAMSVRERCYSS--PTDPTYLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMST-PAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSG--FDEYGESTDCTMECAGDADEICGGFNAMSV 825
            CWCG   A YD NGA VCDM C GDAG+ CGGF+AMS+ E         DP+YLGC+ D    R+F     S SMTA  C+  CA  AYYGTQ+  E    +   Y+T  ++ +         DEICGGF AMS      D     D +YLGC+ D    RVF     S +MT+  C++ C+  AYYGTQY  ECWCG  G  +D  G    C M C GDADEICGGF AMSV
Sbjct:   25 CWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEHDVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTEV---SGFRYNTPSDNHE------EGHDEICGGFYAMSIYENDADDGESDDPSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAMSV 247          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: A0A0F4ZFK6_9PEZI (Uncharacterized protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZFK6_9PEZI)

HSP 1 Score: 187 bits (476), Expect = 2.250e-51
Identity = 120/333 (36.04%), Postives = 172/333 (51.65%), Query Frame = 1
Query:    7 ASFLGCFADA---EDRVFSVSTSSASMTSATCAAFCSDYAYYATQFGAECWCGNNDAYDEN---GAAVCDMECAGDAGDICGGFFAMSVRERCYSSP----------TDPTYLGCFVDSQTDRIFPV-STDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPT-----DATYLGCFIDSQTGRVF--SVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSGFDEYG--ESTDCTMECAGDADEICGGFNAMSVQPTTG-----------GDYTNLGCWSDPQDSRMM 894
            A+ +GC+ D+   +  +  VS++S SM +  CAA C+   Y+  ++G ECWCGN  AY+      A+ C M C+GDA   CGG    S R + Y +P          +   YLGCF ++ T R+ P  +    +MTA  C + C  Y Y+GT++G ECWCGNN   D L ++TDC+M C GD +++CGG + ++   P  +   T        Y GC+ DS T RV   S   D   MT   CA+ CS Y Y+G +YG +C+CG S  +       T CTM C G++ E CGG + +S+   T              YT   CW+D   SR +
Sbjct:   60 ATQIGCYIDSTGGQRALDGVSSASVSMVAQLCAAACAKSKYFGLEYGDECWCGNTIAYNAPLAPSASECSMPCSGDANATCGG----SQRIQIYLTPDYIAPAPATISGTPYLGCFQEAAT-RVLPNRALAQANMTAEICLANCVGYLYFGTEYGNECWCGNNKP-DLLADATDCSMVCAGDDEQLCGGPDRLTVYGPQAIKQDTLPSIAGYAYQGCYSDSATARVLTGSFYYDEA-MTLEMCATDCSLYEYFGVEYGTQCYCGTSVSNTSAIMPPTSCTMTCGGNSSETCGGSDRISLYKNTNMTTSVGNAANATGYTYSQCWTDSVSSRAL 385          
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 9.110e-50
Identity = 108/293 (36.86%), Postives = 143/293 (48.81%), Query Frame = 1
Query:   16 LGCFAD-AEDRVFSVSTSSASMTSATCAAFC----SDYAYYATQFGAECWCGNNDAYDENGAAVCDMECAGDAGDICGGFFAMSVRE----RCYSSPTDPTYLGCFVDSQTDRIFPVSTDSGSMTAAFCASFCADYA----YYGTQFGEECWCGNNSGYDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFIDSQTGRVFSVTTDSGSMTSAFCASFCSDY--AYYGTQYGEECWCGN--------SGFDEYGESTDCTMECAGDADEICGGFNAMSV 825
            LGC+ D   DRV +   SS  MT + CAA+C    + YAYYA Q+G ECWC + D    +G A CD  C+GDA   CGGF+A ++ +       + P D  Y+GCF D   DR+    T S SMT+  CA +CA+ +    YY TQ+G +CWC      D       C  AC GDA   CGGF A        +  PT+  Y+GCF D    RV      +  MT   C + C++    ++  QY  ECWCG           +D +G        C+GD    CGG  A S+
Sbjct:  281 LGCYKDDPSDRVLTAMWSSPVMTPSVCAAYCHRESASYAYYAIQYGGECWCQDTDIDLRHGEATCDYACSGDASISCGGFYAFTLYDLEGANLPTPPADDNYVGCFADDLQDRVLGAETSSSSMTSEACADYCANESPRNMYYATQYGAQCWCAEE--VDLRHGEGRCAYACTGDAKTTCGGFEAFDLFEVNPLSPPTEDYYVGCFADDLEDRVLEDMISAVDMTLEACENHCTERNKPFFALQYSVECWCGGCEILDDGPDKYDRHGAGVCNDFPCSGDPTRQCGGLVAFSL 571          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5901.16426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH79_ECTSI2.610e-8647.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K223_9PHAE1.310e-8072.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K060_9PHAE3.060e-7845.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G957_ECTSI3.000e-6956.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI2.320e-6042.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAS7_9PHAE8.520e-5740.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X8_9PHAE1.700e-5546.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV8_9PHAE3.650e-5547.21WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0F4ZFK6_9PEZI2.250e-5136.04Uncharacterized protein n=1 Tax=Thielaviopsis punc... [more]
D7G975_ECTSI9.110e-5036.86Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5901contigEcto-sp13_S_contig5901:4931..8508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score288.9
Seed ortholog evalue2.7e-75
Seed eggNOG ortholog2880.D7FH79
Model size894
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size894
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5901.16426.1prot_Ecto-sp13_S_contig5901.16426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5901 4931..8508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463820.6229048-CDS-Ecto-sp13_S_contig5901:4930..49981681463820.6229048-CDS-Ecto-sp13_S_contig5901:4930..4998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 4931..4998 -
1681463820.6369357-CDS-Ecto-sp13_S_contig5901:5463..55751681463820.6369357-CDS-Ecto-sp13_S_contig5901:5463..5575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 5464..5575 -
1681463820.648017-CDS-Ecto-sp13_S_contig5901:5860..59171681463820.648017-CDS-Ecto-sp13_S_contig5901:5860..5917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 5861..5917 -
1681463820.6584592-CDS-Ecto-sp13_S_contig5901:6215..63351681463820.6584592-CDS-Ecto-sp13_S_contig5901:6215..6335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 6216..6335 -
1681463820.6699567-CDS-Ecto-sp13_S_contig5901:6668..67791681463820.6699567-CDS-Ecto-sp13_S_contig5901:6668..6779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 6669..6779 -
1681463820.6819568-CDS-Ecto-sp13_S_contig5901:7146..72031681463820.6819568-CDS-Ecto-sp13_S_contig5901:7146..7203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 7147..7203 -
1681463820.6907725-CDS-Ecto-sp13_S_contig5901:7446..75391681463820.6907725-CDS-Ecto-sp13_S_contig5901:7446..7539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 7447..7539 -
1681463820.7033265-CDS-Ecto-sp13_S_contig5901:7776..79081681463820.7033265-CDS-Ecto-sp13_S_contig5901:7776..7908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 7777..7908 -
1681463820.7178957-CDS-Ecto-sp13_S_contig5901:8173..82301681463820.7178957-CDS-Ecto-sp13_S_contig5901:8173..8230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 8174..8230 -
1681463820.7272968-CDS-Ecto-sp13_S_contig5901:8421..85081681463820.7272968-CDS-Ecto-sp13_S_contig5901:8421..8508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5901 8422..8508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5901.16426.1

>prot_Ecto-sp13_S_contig5901.16426.1 ID=prot_Ecto-sp13_S_contig5901.16426.1|Name=mRNA_Ecto-sp13_S_contig5901.16426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp
SDASFLGCFADAEDRVFSVSTSSASMTSATCAAFCSDYAYYATQFGAECW
CGNNDAYDENGAAVCDMECAGDAGDICGGFFAMSVRERCYSSPTDPTYLG
CFVDSQTDRIFPVSTDSGSMTAAFCASFCADYAYYGTQFGEECWCGNNSG
YDTLGESTDCTMACPGDADEICGGFNAMSTPAPVDVVGPTDATYLGCFID
SQTGRVFSVTTDSGSMTSAFCASFCSDYAYYGTQYGEECWCGNSGFDEYG
ESTDCTMECAGDADEICGGFNAMSVQPTTGGDYTNLGCWSDPQDSRMM
back to top

mRNA from alignment at Ecto-sp13_S_contig5901:4931..8508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5901.16426.1 ID=mRNA_Ecto-sp13_S_contig5901.16426.1|Name=mRNA_Ecto-sp13_S_contig5901.16426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5901:4931..8508- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACGCCTCCTTCCTCGGCTGCTTCGCAGACGCCGAAGACCGTGTCTT CTCCGTGTCCACGTCGTCCGCCTCAATGACCTCTGCGGTGAGACAGAAGG AAACGTATGTGTGTGGTGGGCGGTTGATGGCGATCGGCACGTGGTTGCTG CTGAGCGGACGGGCCCCCCCTTTGTTTTTTTGGTGCTCTCTTGCTCGTTG TGTGTTTTGTGTTTCGGCAGGCGGTGTTGTCTTTCATGCTGACGTTGTTG CTCCCATTCCCCCCTGTTTCGGACACAGACGTGCGCGGCGTTTTGCTCCG ACTACGCCTACTACGCCACTCAGTTCGGAGCAGAGGTGAGAGAGAAAGAC TTCCGAGCACGCCTGATGTTGCTTGATTGTCGAAGACGTCATGGGCGGAA ACTGTTTGGTGCATGGAGTCTCTACTTGAGAAAAAATGTCGAGAAGCACG CGTGTCTTCTCTCGAAGTAGGGTGTCGAGGAATAATGATTGAGAGCACTG TCATGTTTCAACCCTGACCTTCCCATGAACCGATACACCCTTACACGTCC TGTCCGTGTTTCTTTATTGGTGCCCTTATATGACAAATTAATCATTGCAG TGCTGGTGCGGCAACAACGACGCCTATGACGAAAACGGTGCTGCTGTTTG CGACATGGAATGCGCTGGAGACGCCGGCGATATCTGCGGAGGGTTTTTTG CCATGTCGGTGCGTGAGCGCTGTTACTCGTCCGTCCGCATGTTGTTGAAT CACAAAATGGGCTTTGCAGAGTCCGCGGAACCTCTGCCAAGACCCTTCTT GTTGACGTATCTTTGCGTAGGCAGCCAAGTGTGGTTCGGGTGTAAGATAA ATCGGCGAAGTTGGGGATCGATTTTAACCATTCTGTTCGCCTCTCGGCTC CGCCCGTCGCAGGTGTACTCGACTGGCTCCGAGCCCGTGGAGACGCCGGC TCCCGTCGACGTGGTTGAGCCCACCGATCCCACGTACCTCGGCTGCTTCG TCGACTCGCAAACTGATCGCATCTTCCCGGTCTCCACCGACTCCGGTTCC ATGACCGCAGCGGTAAGCAGAAGAGTGTTGTGGCCGCCCCCTGCGACCAG ACGACCGTCGAAAACGTAGCAACCCGACTTCGGTGAAGACATCGAAAGTA GGATTGATGGCGCCTTGTATAATGGCTCGACGCATGTCAATTTGCGATGG ATAATCCTTGACTCGTTCTGCCTCCTTCTAATCTCGTGTGTTTGGTCCGG TTGTCGTGTGCGTCGAACACAACGCGACGATTTCGTATGTGGAAAAACAA TACAGTTCTGCGCCAGCTTCTGCGCTGACTACGCCTACTACGGAACGCAG TTCGGGGAAGAGGTGAGTTTGGTCTTGGAAAGCCAGCCGTTGGGTAGTTG TCCGTGCCATGTTCGGACGTAGTGGGCGGTGGAACGGCGAATCTGTTGTC GATGTATGGATTGGCGAGGTAGTCGTGAAATGAGGTTTCGGCTTCCGCGC ATGTCGGAGGTGAAGGGATACCTCCGGACGAAGTCTGGCGTCGTCAGCTT GAAAGCGTTTCTGGGCGTCACATCAAAATTTCGTCGGCTCATGTAGCACT GACACCGTTACCCATCAGTTATGGTTGCAACCGACGCCATTCCCTACCCC AGAAATGTCTCGTGTAGTAATGAACGCTCTTACCAAGTATTCACGCTGAC AACGTAATCCGCGACCATTTGAACCGCAGTGTTGGTGCGGCAACAACTCC GGGTACGACACCCTCGGGGAGTCGACAGACTGCACCATGGCGTGCCCTGG TGACGCCGATGAAATCTGCGGAGGCTTCAACGCCATGTCGGTGCGTAAGC AGCTATTAACTACCGTGCGTCTCGTTTTGCCCTGGGGCGACGGTCGGCGT CATGCGTGTGCTGCTGCAGCTTTGGCGCGGTGCAATCATTCTTCGTTTTG ATTTTTGTCCTCGGCAGTTCCCTAGCATACGTCAGCCCGTCGGTTGATTG TTGTCGTGCAGGGAAGGACTTTTTTTTTGTCTCTTCTTCATGACCAATCC TCTTTTGATGGGTCTTGTCCCCGCCCCCCGTCGCCGCAGATCTACTCGAC CGGCTCCGACCCGGTGGAGACCCCGACGCCCGTCGACGTGGTTGAGACCC CGACGCCCGTCGACGCGATCGAGACCCCGGCGCCTGTCGACGTGGTTGGG CCCACGGACGCCACGTACCTCGGCTGCTTCATCGACTCGCAAACTGGACG CGTCTTCTCGGTCACCACCGACTCCGGTTCCATGACCTCAGCGGTAAGCA GGAGCGTGTTGTGCAAGGCCGGTTGGATTGTCGAAAAGGTGGCACCCCGA CATGAGTGTTTCGATGTGAAGGGTTTAGATTGGCGAATGGGTCGGTTACT GTTTTCTTCCGACCTTAGATCGTGGTGACGTTCGGTGTTTGATTTCGCGA TGTTTCACGGCATTGACGCATAACGACCTGCGATGGATAACACTTGACCC GTTCTGCCTCCTGCTTTTCTTCGGTGCATTCTGCGGTTGTCCCCTCCGTC GAACGTAACCCTACTCATCGATGTTGAAAAAAACAACACAGTTCTGCGCG AGCTTCTGCTCTGACTACGCCTACTACGGAACGCAGTACGGTGAAGAGGT GAGTTTTGTCTCGGGAAGCGAGCCCTTGTTGCATTGCTTGCTGTACCTTG GAAAATCAGCCACTGTACATGGTGGTGCACGTGCCATGTCTCATGTGGGC GATGGTTTGCATCCGTCCCCGGTGTAGATGACGGCCATACGTGGTCGTGA AACGAACTCCAGGCTTTCCCTGTATTTAAGGTAGAAGCGATCGCTTTGGA CGAAGTCTCGTGTTGTCAGCCACGTCTCTCATAATATCGACCGTGGTCGT ACCTATCTCTCGTGCTGCACCTTGCAACGACAGTGTTGGTGCGGCAACTC CGGGTTCGACGAGTACGGGGAGTCGACAGACTGCACCATGGAATGCGCTG GTGATGCCGATGAAATCTGCGGAGGCTTCAACGCCATGTCGGTGCGTACG CAGCTGTTTTACGTAGTTGTGCATCTCGGTTGGCATAGGGCCCGTGGTAG GGGGGTCTTGTGTGTCCTACTGCAACGCTGTGCGCTGTGCACAGCACTAT AAAGGGGTGCTGTTTGTTTTTGATCTGTTCTTGATGTACGAGGACCCCAC ACACGGAAGAGAGGAATCGTTATGTGCATTAATGCTGTCTTACACATCCA AATGAAATAGCCCATGCGTTCTTCCGTCAGGATCGAGCCGTGTGCTGCCG TTTTAAAACCCGTACCGCATCCCCCGCACCAGCCAGTGTCGGACCACCCG TTGCGCACTCAGTCGTTTGGCCCTGCACGTCCGAGTCCAATTTTCCTCTC CCTTACCCCCCTTCATGTACTCACATTCGCTCGGCAACAACCACTGCCAC CGCAGATCTACGCGAACGAAGACGTGGACCCCGAGGAACCAGTCGAGGAG CCTGTGGAAGAACCGACCACCGGCGGCGATTACACCAACTTGGGATGCTG GAGCGACCCCCAGGACTCTAGGATGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5901:4931..8508-

>mRNA_Ecto-sp13_S_contig5901.16426.1 ID=mRNA_Ecto-sp13_S_contig5901.16426.1|Name=mRNA_Ecto-sp13_S_contig5901.16426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5901:4931..8508- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACGCCTCCTTCCTCGGCTGCTTCGCAGACGCCGAAGACCGTGTCTT
CTCCGTGTCCACGTCGTCCGCCTCAATGACCTCTGCGACGTGCGCGGCGT
TTTGCTCCGACTACGCCTACTACGCCACTCAGTTCGGAGCAGAGTGCTGG
TGCGGCAACAACGACGCCTATGACGAAAACGGTGCTGCTGTTTGCGACAT
GGAATGCGCTGGAGACGCCGGCGATATCTGCGGAGGGTTTTTTGCCATGT
CGGTGCGTGAGCGCTGTTACTCGTCCCCCACCGATCCCACGTACCTCGGC
TGCTTCGTCGACTCGCAAACTGATCGCATCTTCCCGGTCTCCACCGACTC
CGGTTCCATGACCGCAGCGTTCTGCGCCAGCTTCTGCGCTGACTACGCCT
ACTACGGAACGCAGTTCGGGGAAGAGTGTTGGTGCGGCAACAACTCCGGG
TACGACACCCTCGGGGAGTCGACAGACTGCACCATGGCGTGCCCTGGTGA
CGCCGATGAAATCTGCGGAGGCTTCAACGCCATGTCGACCCCGGCGCCTG
TCGACGTGGTTGGGCCCACGGACGCCACGTACCTCGGCTGCTTCATCGAC
TCGCAAACTGGACGCGTCTTCTCGGTCACCACCGACTCCGGTTCCATGAC
CTCAGCGTTCTGCGCGAGCTTCTGCTCTGACTACGCCTACTACGGAACGC
AGTACGGTGAAGAGTGTTGGTGCGGCAACTCCGGGTTCGACGAGTACGGG
GAGTCGACAGACTGCACCATGGAATGCGCTGGTGATGCCGATGAAATCTG
CGGAGGCTTCAACGCCATGTCGGTGCAACCGACCACCGGCGGCGATTACA
CCAACTTGGGATGCTGGAGCGACCCCCAGGACTCTAGGATGATG
back to top