mRNA_Ecto-sp13_S_contig5880.16391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5880.16391.1
Unique NamemRNA_Ecto-sp13_S_contig5880.16391.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7G5N3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.090e-22
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  123 RNMFHSPWSKNEYIKQYAVKTMNSARG-LTES*NTLLNLVQTASALSFAVRAPTHNDEELRQLHLLARDIAYMAKEGVGKDGVRP 374
            R +  S WS  +Y KQ  VKT+ S  G  T +   LL LVQ+ASALSFAVRAP+HNDEEL+QLH  A+D+ ++AKE +GKDGVRP
Sbjct:    6 RQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRP 90
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7G0R9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.730e-21
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  123 RNMFHSPWSKNEYIKQYAVKTMNSARG-LTES*NTLLNLVQTASALSFAVRAPTHNDEELRQLHLLARDIAYMAKEGVGKDGVRP 374
            R +  S WS  +Y KQ  VKT+ S  G  T +   LL LVQ+ASALSFAVRAP+HNDEEL+QLH  A+D+ ++AKE +GKDGVRP
Sbjct:   49 RQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEDLLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRP 133
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7FI42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI42_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.790e-9
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  156 EYIKQYAVKTMNSA-RGLTES*NTLLNLVQTASALSFAVRAPTHNDEELRQLHLLARDI 329
            ++ KQ  +KT+ S  RG   +   +L LVQ+ASALSFAVRAP+HNDEEL+QLH  A D+
Sbjct:    3 KHFKQDFMKTLVSEWRGQNAAWEGMLTLVQSASALSFAVRAPSHNDEELKQLHTHALDM 61
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.390e-8
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:  225 LLNLVQTASALSFAVRAPTHNDEELRQLHLLARDIAYMAKEGVGKDGVRP 374
            L  LVQ AS LS+AVRAP+HND EL QL LLARD+     + +G+ G RP
Sbjct:   74 LQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRP 123
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 9.440e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 REHGHALYPPRETPLEDIVTNNSSLTGSNNWLLSSMMLLVF 123
            RE G ++YP  E PL+DIVT+ +SLTGSN WLL+S+MLLVF
Sbjct:  700 REGGSSIYPVGEAPLKDIVTDYASLTGSNKWLLASIMLLVF 740
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.380e-5
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:  225 LLNLVQTASALSFAVRAPTHNDEELRQLHLLARDIAYMAKEGVGKDGVRP 374
            L  L++ AS LS AVRAP+HND EL QL LLARD+  +  + +G+ G RP
Sbjct:  635 LQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDVVGVYSKVLGRTGSRP 684
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-5
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  123 RNMFHSPWSKNEYIKQYAVKTMNSARG-LTES*NTLLNLVQTASALSFAVRAPTHNDEELRQLHLLARDI 329
            R +FH+  +   YIK   +  +    G + E+ ++LL LVQ AS+LSFA+RAP++ND E+ QLH  A+D+
Sbjct:  228 RAVFHTTATMEMYIKGRELGELVDDYGSMQEARDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQDM 297
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: D7FXD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.710e-5
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   19 LYPPRETPLEDIVTNNSSLTGSNNWLLSSMMLLVF 123
            LYPP    L+DIVTN SSLTGS+ W L SM+LLVF
Sbjct:  123 LYPPGTEHLKDIVTNYSSLTGSDKWTLQSMLLLVF 157
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.210e-5
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  225 LLNLVQTASALSFAVRAPTHNDEELRQLHLLARDI 329
            L  LVQ AS LS+AVRAP+HND EL QL LLARD+
Sbjct:  122 LQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDV 156
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BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Match: A0A6H5K4U1_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U1_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 8.070e-5
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 3 
Query:  225 LLNLVQTASALSFAVRAPTHNDEELRQLHLLARDIAYMAKEGVGKDG 365
            L  L+Q AS LS AVRAP+HND EL QL LLARD+  ++      DG
Sbjct:   23 LQKLIQMASHLSCAVRAPSHNDLELAQLDLLARDVVSLSDLYYSCDG 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5880.16391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G5N3_ECTSI5.090e-2258.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0R9_ECTSI1.730e-2158.82Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FI42_ECTSI2.790e-955.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH37_ECTSI7.390e-858.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6T4_ECTSI9.440e-865.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9E1_9PHAE1.380e-554.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M3_ECTSI1.490e-542.86Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FXD1_ECTSI1.710e-568.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWD2_9PHAE4.210e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U1_9PHAE8.070e-555.32Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5880contigEcto-sp13_S_contig5880:1777..2672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size374
Hectar predicted targeting categoryother localisation
Exons3
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.2099414-CDS-Ecto-sp13_S_contig5880:1776..19281681463817.2099414-CDS-Ecto-sp13_S_contig5880:1776..1928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5880 1777..1928 +
1681463817.220658-CDS-Ecto-sp13_S_contig5880:2131..21591681463817.220658-CDS-Ecto-sp13_S_contig5880:2131..2159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5880 2132..2159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.2316117-UTR-Ecto-sp13_S_contig5880:2159..23081681463817.2316117-UTR-Ecto-sp13_S_contig5880:2159..2308Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5880 2160..2308 +
1681463817.2435937-UTR-Ecto-sp13_S_contig5880:2627..26721681463817.2435937-UTR-Ecto-sp13_S_contig5880:2627..2672Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5880 2628..2672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5880.16391.1prot_Ecto-sp13_S_contig5880.16391.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5880 1777..2159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5880.16391.1

>prot_Ecto-sp13_S_contig5880.16391.1 ID=prot_Ecto-sp13_S_contig5880.16391.1|Name=mRNA_Ecto-sp13_S_contig5880.16391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
REHGHALYPPRETPLEDIVTNNSSLTGSNNWLLSSMMLLVFETCSIARGP
KMNTLNSTQ*
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mRNA from alignment at Ecto-sp13_S_contig5880:1777..2672+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5880.16391.1 ID=mRNA_Ecto-sp13_S_contig5880.16391.1|Name=mRNA_Ecto-sp13_S_contig5880.16391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5880:1777..2672+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAGCACGGTCACGCTTTGTACCCGCCACGCGAGACGCCACTCGAGGA
TATCGTCACGAACAACTCTTCCCTAACGGGTAGTAATAATTGGCTTTTGT
CCTCCATGATGCTGCTCGTCTTCGAAACATGTTCCATAGCCCGTGGTCCA
AAGTGAGCCCACATGTGCAGAATAACTGAGATGATAAAAGCAACAGCACT
CATTCATGTGGTCGCCCTTCCACCGCAGCAGCCTTTAAGTACAGTTTGTG
CGACGCCACCACAGCTCTCTGATTCCACACCCTACAAGACAAAATCCCCT
TCCTCTGTCTCTCTCTCTTTCTCCCCCTCCCTCTCTCTGCCCACCCTCAT
CCCAGAATGAATACATTAAACAGTACGCAGTAAAGACTATGAACTCAGCG
CGGGGCTTGACGGAGTCGTAGAACACGTTGCTCAACCTGGTGCAAACCGC
ATCTGCGCTGTCGTTTGCTGTCCGAGCGCCGACTCACAACGACGAGGAAC
TGCGACAGCTACACCTGCTTGCGCGAGACATTGTGAGACAAGACGACGCT
ACCACATGGAAATGATGGACGCGCCGGTGTGTGTTTGTGGTCCATATGCT
CTCGAGGAAGTAAGGAAGTATGCGTATGTCCTCACCAAGCTGGTACTGAT
TTTGCTCGACACATAATGTGCACCCGTACCTTCTGGACTGATGTATTCTG
CACAATAAGACGACCCTAAACCCCTCCTCGTAGTCTCATCTCATATGGGA
TGTCGTCTGTACCACACAGGTGAAGCACACTTATACTCACTGCCCCCGAT
TCCCTCTTGTCGATTGCTGTGTTGAAAAATAATTTCTCATATATACAATA
GGCGTATATGGCGAAGGAAGGTGTCGGGAAGGACGGCGTGAGGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5880:1777..2672+

>mRNA_Ecto-sp13_S_contig5880.16391.1 ID=mRNA_Ecto-sp13_S_contig5880.16391.1|Name=mRNA_Ecto-sp13_S_contig5880.16391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5880:1777..2672+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAGCACGGTCACGCTTTGTACCCGCCACGCGAGACGCCACTCGAGGA
TATCGTCACGAACAACTCTTCCCTAACGGGTAGTAATAATTGGCTTTTGT
CCTCCATGATGCTGCTCGTCTTCGAAACATGTTCCATAGCCCGTGGTCCA
AAAATGAATACATTAAACAGTACGCAGTAA
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