mRNA_Ecto-sp13_S_contig5879.16388.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5879.16388.1
Unique NamemRNA_Ecto-sp13_S_contig5879.16388.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5879.16388.1 vs. uniprot
Match: D7FKP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.360e-11
Identity = 31/37 (83.78%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:   99 GGPDRASKGKVDTLHVERGGVAEPVVLLVEAICVVCV 209
            G   RASKGKVDTLHVERGGV EP  LLVEAICVVCV
Sbjct:   45 GNIQRASKGKVDTLHVERGGVTEPAALLVEAICVVCV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5879.16388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKP2_ECTSI8.360e-1183.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5879contigEcto-sp13_S_contig5879:8236..8444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size209
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001620.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.944774-CDS-Ecto-sp13_S_contig5879:8235..83971681463816.944774-CDS-Ecto-sp13_S_contig5879:8235..8397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5879 8236..8397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.957417-UTR-Ecto-sp13_S_contig5879:8397..84441681463816.957417-UTR-Ecto-sp13_S_contig5879:8397..8444Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5879 8398..8444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5879.16388.1prot_Ecto-sp13_S_contig5879.16388.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5879 8236..8397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5879.16388.1

>prot_Ecto-sp13_S_contig5879.16388.1 ID=prot_Ecto-sp13_S_contig5879.16388.1|Name=mRNA_Ecto-sp13_S_contig5879.16388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MLPTSAPPPPPPLPFNARCQEATPSLSNQLVVLEDPTGQARARSTRYTSN
GAV*
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mRNA from alignment at Ecto-sp13_S_contig5879:8236..8444+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5879.16388.1 ID=mRNA_Ecto-sp13_S_contig5879.16388.1|Name=mRNA_Ecto-sp13_S_contig5879.16388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5879:8236..8444+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCAACAAGTGCGCCGCCGCCGCCGCCGCCTCTACCATTTAATGC
AAGGTGTCAGGAGGCCACGCCGTCCTTGTCCAACCAGCTCGTGGTCTTGG
AGGACCCGACCGGGCAAGCAAGGGCAAGGTCGACACGCTACACGTCGAAC
GGGGCGGTGTAGCTGAACCGGTCGTGCTATTGGTAGAGGCGATTTGCGTG
GTGTGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5879:8236..8444+

>mRNA_Ecto-sp13_S_contig5879.16388.1 ID=mRNA_Ecto-sp13_S_contig5879.16388.1|Name=mRNA_Ecto-sp13_S_contig5879.16388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5879:8236..8444+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCAACAAGTGCGCCGCCGCCGCCGCCGCCTCTACCATTTAATGC
AAGGTGTCAGGAGGCCACGCCGTCCTTGTCCAACCAGCTCGTGGTCTTGG
AGGACCCGACCGGGCAAGCAAGGGCAAGGTCGACACGCTACACGTCGAAC
GGGGCGGTGTAG
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