mRNA_Ecto-sp13_S_contig58743.16380.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58743.16380.1
Unique NamemRNA_Ecto-sp13_S_contig58743.16380.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58743.16380.1 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.930e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  275 RIMLEPSEVVRDEEGNLFATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR 430
            RIMLEPSEVVRDEEGNL ATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR
Sbjct:   87 RIMLEPSEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR 138
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BLAST of mRNA_Ecto-sp13_S_contig58743.16380.1 vs. uniprot
Match: A0A6H5KW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW92_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:  281 MLEPSEVVRDEEGNLFATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR 430
            MLEP+EVVRDEEGNL ATLPAADSRTAHVRGVLKVENGE VRVGVVNAGR
Sbjct:    1 MLEPAEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGEPVRVGVVNAGR 50
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BLAST of mRNA_Ecto-sp13_S_contig58743.16380.1 vs. uniprot
Match: A0A7S4NPP0_GUITH (16S rRNA (uracil(1498)-N(3))-methyltransferase n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NPP0_GUITH)

HSP 1 Score: 53.5 bits (127), Expect = 1.530e-5
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:  275 RIMLEPSEVVRDEEGNLFATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR 430
            R++ EP EVV   + +    L  +D R  H++ +LK+ENG+S+R+GVV+AG+
Sbjct:   83 RLLFEPEEVVPSSQSSCLLYLAKSDKRVTHIKKILKLENGQSLRIGVVDAGK 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58743.16380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR28_ECTSI7.930e-2298.0816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6H5KW92_9PHAE1.100e-1994.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4NPP0_GUITH1.530e-542.3116S rRNA (uracil(1498)-N(3))-methyltransferase n=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58743contigEcto-sp13_S_contig58743:42..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.1
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D8LR28
Model size433
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2S21E@2759,COG1385@1
Cds size153
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.5326848-UTR-Ecto-sp13_S_contig58743:41..3211681463816.5326848-UTR-Ecto-sp13_S_contig58743:41..321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58743 42..321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.5441086-CDS-Ecto-sp13_S_contig58743:321..4741681463816.5441086-CDS-Ecto-sp13_S_contig58743:321..474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58743 322..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58743.16380.1prot_Ecto-sp13_S_contig58743.16380.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58743 322..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58743.16380.1

>prot_Ecto-sp13_S_contig58743.16380.1 ID=prot_Ecto-sp13_S_contig58743.16380.1|Name=mRNA_Ecto-sp13_S_contig58743.16380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MLEPSEVVRDEEGNLFATLPAADSRTAHVRGVLKVENGESVRVGVVNAGR
*
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mRNA from alignment at Ecto-sp13_S_contig58743:42..474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58743.16380.1 ID=mRNA_Ecto-sp13_S_contig58743.16380.1|Name=mRNA_Ecto-sp13_S_contig58743.16380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=433bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58743:42..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAACGCCCCCGGTTTTCTGCTCGTTTTTGAGATGTGAGGAAATCCT
TGGGTTGTGCAGGAACTTCGCGGACCGACAAAATGGACGTTTTTGTTTCT
ACAGGAAGCCTCTCGCGTGTGCTCACCTTTCGCAATCGAACCCCGACAAA
ATACGCCAGGAACTTGGGCCCGAACATGGAACAGACGTAAATATCTCGTA
CAAAAAATCCTGTTTCCTCGACTTGCGATTCCCTCTAGACACGACGCACT
CCCTCCCCATGTCCTTTCGTTTTCAGGATTATGCTTGAGCCGTCTGAGGT
GGTGAGGGATGAAGAAGGAAACCTATTTGCTACACTACCCGCTGCAGACA
GCCGAACCGCCCATGTAAGAGGTGTGCTGAAGGTGGAGAACGGGGAGTCT
GTTCGCGTCGGAGTGGTTAACGCGGGACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58743:42..474+

>mRNA_Ecto-sp13_S_contig58743.16380.1 ID=mRNA_Ecto-sp13_S_contig58743.16380.1|Name=mRNA_Ecto-sp13_S_contig58743.16380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58743:42..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGAGCCGTCTGAGGTGGTGAGGGATGAAGAAGGAAACCTATTTGC
TACACTACCCGCTGCAGACAGCCGAACCGCCCATGTAAGAGGTGTGCTGA
AGGTGGAGAACGGGGAGTCTGTTCGCGTCGGAGTGGTTAACGCGGGACGG
TGA
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