mRNA_Ecto-sp13_S_contig58588.16348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58588.16348.1
Unique NamemRNA_Ecto-sp13_S_contig58588.16348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A7S2XCJ6_9EUKA (GPN-loop GTPase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XCJ6_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.550e-12
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:   58 YVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            YVFIDTPGQIEVFTWSASGQIIT+TLASAFPTV
Sbjct:  209 YVFIDTPGQIEVFTWSASGQIITDTLASAFPTV 241
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: D8LKI4_ECTSI (GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.150e-12
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:   58 YVFIDTPGQIEVFTWSASGQIITETLASAFPT 153
            YVFIDTPGQIEVFTWSASGQIITETLASAFPT
Sbjct:  151 YVFIDTPGQIEVFTWSASGQIITETLASAFPT 182
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A835YZW9_9STRA (GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   28 ARHDPRGPRRYVFIDTPGQIEVFTWSASGQIITETLASAFPT 153
            AR D      YVF+DTPGQIEVFTWSASGQIITE+LASAFPT
Sbjct:  133 ARSDSAEGLDYVFVDTPGQIEVFTWSASGQIITESLASAFPT 174
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A167Z6G4_9EURO (GPN-loop GTPase 1 n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167Z6G4_9EURO)

HSP 1 Score: 68.6 bits (166), Expect = 4.110e-12
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LLPHDPPSNARHDPRGPRRYVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            LLPH+P +   +    P +++ +DTPGQIEVF WSASG I+ ETLAS FPTV
Sbjct:  157 LLPHNPTTGQPNPGARPSKHILVDTPGQIEVFVWSASGSILLETLASTFPTV 208
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A7S0I0E1_9EUKA (GPN-loop GTPase (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0E1_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 5.060e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   40 PRGPRRYVFIDTPGQIEVFTWSASGQIITETLASAFPT 153
            P  P RYV +DTPGQIE+FTWSASGQIITE+LASA PT
Sbjct:  131 PCDPLRYVLLDTPGQIEIFTWSASGQIITESLASAMPT 168
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: UPI000719B7D1 (GPN-loop GTPase 1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B7D1)

HSP 1 Score: 67.4 bits (163), Expect = 8.860e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   46 GPRRYVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            G  +Y+ +DTPGQIEVFTWSASGQIITETLASAFPTV
Sbjct:   88 GECKYMIMDTPGQIEVFTWSASGQIITETLASAFPTV 124
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A7S2N6V9_9EUKA (GPN-loop GTPase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N6V9_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 9.080e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   25 NARHDPRGPRRYVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            N R D   P +Y   DTPGQIE+FTWSASGQIITE+LA+++PTV
Sbjct:   52 NKRVDSGKPPQYALFDTPGQIEIFTWSASGQIITESLAASYPTV 95
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A6I9NPQ4_9TELE (GPN-loop GTPase n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NPQ4_9TELE)

HSP 1 Score: 64.7 bits (156), Expect = 1.090e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   55 RYVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            RYV IDTPGQIEVFTWSASG IITETLAS+FP V
Sbjct:   19 RYVLIDTPGQIEVFTWSASGTIITETLASSFPCV 52
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: A0A6J2PDK3_COTGO (GPN-loop GTPase n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2PDK3_COTGO)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   55 RYVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            RYV IDTPGQIEVFTWSASG IITETLAS+FP V
Sbjct:  137 RYVLIDTPGQIEVFTWSASGTIITETLASSFPCV 170
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BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Match: UPI00071C4A43 (GPN-loop GTPase 1-like n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071C4A43)

HSP 1 Score: 62.8 bits (151), Expect = 3.320e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   58 YVFIDTPGQIEVFTWSASGQIITETLASAFPTV 156
            YV +DTPGQIEVFTWSASG IITE LAS+FPTV
Sbjct:    1 YVILDTPGQIEVFTWSASGSIITEALASSFPTV 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58588.16348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XCJ6_9EUKA1.550e-1296.97GPN-loop GTPase n=1 Tax=Lotharella oceanica TaxID=... [more]
D8LKI4_ECTSI2.150e-12100.00GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835YZW9_9STRA3.510e-1278.57GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A167Z6G4_9EURO4.110e-1257.69GPN-loop GTPase 1 n=1 Tax=Ascosphaera apis ARSEF 7... [more]
A0A7S0I0E1_9EUKA5.060e-1278.95GPN-loop GTPase (Fragment) n=2 Tax=Phaeocystis ant... [more]
UPI000719B7D18.860e-1283.78GPN-loop GTPase 1-like n=1 Tax=Priapulus caudatus ... [more]
A0A7S2N6V9_9EUKA9.080e-1265.91GPN-loop GTPase (Fragment) n=1 Tax=Haptolina brevi... [more]
A0A6I9NPQ4_9TELE1.090e-1188.24GPN-loop GTPase n=1 Tax=Notothenia coriiceps TaxID... [more]
A0A6J2PDK3_COTGO2.550e-1188.24GPN-loop GTPase n=1 Tax=Cottoperca gobio TaxID=567... [more]
UPI00071C4A433.320e-1184.85GPN-loop GTPase 1-like n=1 Tax=Octopus bimaculoide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58588contigEcto-sp13_S_contig58588:387..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score68.9
Seed ortholog evalue8.5e-10
Seed eggNOG ortholog2880.D8LKI4
Preferred nameGPN1
Model size171
KEGG koko:K00700,ko:K06883,ko:K19513
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005874,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051169,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051641,GO:0051649,GO:0061458,GO:0065003,GO:0070013,GO:0071840,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1903047,GO:1990114
Exons1
EggNOG free text desc.GTPase activity
EggNOG OGsKOG1532@1,KOG1532@2759
EC2.4.1.18
Cds size171
COG Functional cat.KLT
CAZyCBM48,GH13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.2789993-CDS-Ecto-sp13_S_contig58588:386..5571681463813.2789993-CDS-Ecto-sp13_S_contig58588:386..557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58588 387..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58588.16348.1prot_Ecto-sp13_S_contig58588.16348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58588 387..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58588.16348.1

>prot_Ecto-sp13_S_contig58588.16348.1 ID=prot_Ecto-sp13_S_contig58588.16348.1|Name=mRNA_Ecto-sp13_S_contig58588.16348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LLPHDPPSNARHDPRGPRRYVFIDTPGQIEVFTWSASGQIITETLASAFP
TVSGGR*
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mRNA from alignment at Ecto-sp13_S_contig58588:387..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58588.16348.1 ID=mRNA_Ecto-sp13_S_contig58588.16348.1|Name=mRNA_Ecto-sp13_S_contig58588.16348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58588:387..557- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTGCCCCATGACCCTCCTTCAAACGCACGACATGATCCACGGGGACC
CCGCAGGTACGTGTTCATCGACACCCCGGGGCAGATCGAGGTGTTCACTT
GGAGCGCATCTGGGCAAATCATCACGGAAACGCTGGCGTCCGCTTTCCCT
ACCGTGAGTGGGGGGCGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58588:387..557-

>mRNA_Ecto-sp13_S_contig58588.16348.1 ID=mRNA_Ecto-sp13_S_contig58588.16348.1|Name=mRNA_Ecto-sp13_S_contig58588.16348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58588:387..557- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTGCCCCATGACCCTCCTTCAAACGCACGACATGATCCACGGGGACC
CCGCAGGTACGTGTTCATCGACACCCCGGGGCAGATCGAGGTGTTCACTT
GGAGCGCATCTGGGCAAATCATCACGGAAACGCTGGCGTCCGCTTTCCCT
ACCGTGAGTGGGGGGCGTTAA
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