prot_Ecto-sp13_S_contig5852.16336.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16336.1
Unique Nameprot_Ecto-sp13_S_contig5852.16336.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length275
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Match: Q8QND9_ESV1K (EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND9_ESV1K)

HSP 1 Score: 482 bits (1240), Expect = 6.440e-171
Identity = 250/274 (91.24%), Postives = 258/274 (94.16%), Query Frame = 0 
Query:    1 MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVV-TTHDRDDDTNTAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDGDPNRRVHMSKKRERILRHFLKTQ 273
            MQPAAKKKRL +E TG TVP SFA ATIKCK+TP YASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVL+HFA+EIQRFFR VVV TTHD DDDTNTAVCPISLKP+AEIPC HRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDP LINQYKHR+E VA MAEDMA+VQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDL ELDR+RS LTMKSLGDLVDGDP RRVHMSKKRERILRHFLKTQ
Sbjct:    1 MQPAAKKKRLTQEPTGGTVPGSFARATIKCKKTPAYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLNHFAQEIQRFFRRVVVVTTHDGDDDTNTAVCPISLKPIAEIPCGHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPGLINQYKHRREHVARMAEDMAVVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLTELDRDRSALTMKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 274
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BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Match: D8LPG6_ECTSI (EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG6_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 2.120e-165
Identity = 238/273 (87.18%), Postives = 252/273 (92.31%), Query Frame = 0 
Query:    1 MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVVTTHDRDDDTNTAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDGDPNRRVHMSKKRERILRHFLKTQ 273
            MQPAAKKKRL RETT  T PRSFAHATIKCK+TP YASAYKAMTL SAKQANRRIGTA+WYRLKKDALVATIVL+HFAEEIQRFFRHVVVTT D DDD  TAVCPISLKP+ EIPC HRFRHGNIWFNK+ LAQYMRKTSDF+NPVTRVELREEDVL++DP LI QY+HRKEL   MAEDMALVQSVENELEEVFQ+MVEAAQEI TRMEFRIVFD+LAEDFQ+CHGDL ELDR+RSVLT+KSLGDLVDGDP RRVHMSKKRERILRHFLKTQ
Sbjct:    1 MQPAAKKKRLTRETTRGTSPRSFAHATIKCKKTPAYASAYKAMTLASAKQANRRIGTADWYRLKKDALVATIVLNHFAEEIQRFFRHVVVTTRDSDDDARTAVCPISLKPITEIPCGHRFRHGNIWFNKDTLAQYMRKTSDFMNPVTRVELREEDVLKVDPGLIKQYRHRKELAERMAEDMALVQSVENELEEVFQDMVEAAQEIRTRMEFRIVFDHLAEDFQECHGDLTELDRDRSVLTLKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QND9_ESV1K6.440e-17191.24EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPG6_ECTSI2.120e-16587.18EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:1619..2443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16336.1mRNA_Ecto-sp13_S_contig5852.16336.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5852 1619..2443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5852.16336.1 ID=prot_Ecto-sp13_S_contig5852.16336.1|Name=mRNA_Ecto-sp13_S_contig5852.16336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQ
ANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVVTTHDRDDDTN
TAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVE
LREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVE
AAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDG
DPNRRVHMSKKRERILRHFLKTQT*
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