mRNA_Ecto-sp13_S_contig5852.16336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16336.1
Unique NamemRNA_Ecto-sp13_S_contig5852.16336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Match: Q8QND9_ESV1K (EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND9_ESV1K)

HSP 1 Score: 482 bits (1240), Expect = 6.440e-171
Identity = 250/274 (91.24%), Postives = 258/274 (94.16%), Query Frame = 1 
Query:    1 MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVV-TTHDRDDDTNTAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDGDPNRRVHMSKKRERILRHFLKTQ 819
            MQPAAKKKRL +E TG TVP SFA ATIKCK+TP YASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVL+HFA+EIQRFFR VVV TTHD DDDTNTAVCPISLKP+AEIPC HRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDP LINQYKHR+E VA MAEDMA+VQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDL ELDR+RS LTMKSLGDLVDGDP RRVHMSKKRERILRHFLKTQ
Sbjct:    1 MQPAAKKKRLTQEPTGGTVPGSFARATIKCKKTPAYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLNHFAQEIQRFFRRVVVVTTHDGDDDTNTAVCPISLKPIAEIPCGHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPGLINQYKHRREHVARMAEDMAVVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLTELDRDRSALTMKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 274
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BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Match: D8LPG6_ECTSI (EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG6_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 2.120e-165
Identity = 238/273 (87.18%), Postives = 252/273 (92.31%), Query Frame = 1 
Query:    1 MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVVTTHDRDDDTNTAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDGDPNRRVHMSKKRERILRHFLKTQ 819
            MQPAAKKKRL RETT  T PRSFAHATIKCK+TP YASAYKAMTL SAKQANRRIGTA+WYRLKKDALVATIVL+HFAEEIQRFFRHVVVTT D DDD  TAVCPISLKP+ EIPC HRFRHGNIWFNK+ LAQYMRKTSDF+NPVTRVELREEDVL++DP LI QY+HRKEL   MAEDMALVQSVENELEEVFQ+MVEAAQEI TRMEFRIVFD+LAEDFQ+CHGDL ELDR+RSVLT+KSLGDLVDGDP RRVHMSKKRERILRHFLKTQ
Sbjct:    1 MQPAAKKKRLTRETTRGTSPRSFAHATIKCKKTPAYASAYKAMTLASAKQANRRIGTADWYRLKKDALVATIVLNHFAEEIQRFFRHVVVTTRDSDDDARTAVCPISLKPITEIPCGHRFRHGNIWFNKDTLAQYMRKTSDFMNPVTRVELREEDVLKVDPGLIKQYRHRKELAERMAEDMALVQSVENELEEVFQDMVEAAQEIRTRMEFRIVFDHLAEDFQECHGDLTELDRDRSVLTLKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QND9_ESV1K6.440e-17191.24EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPG6_ECTSI2.120e-16587.18EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:1619..2443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-140
Ec32 orthologEc-06_005450.1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.5927844-CDS-Ecto-sp13_S_contig5852:1618..24431681463812.5927844-CDS-Ecto-sp13_S_contig5852:1618..2443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5852 1619..2443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16336.1prot_Ecto-sp13_S_contig5852.16336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5852 1619..2443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5852.16336.1

>prot_Ecto-sp13_S_contig5852.16336.1 ID=prot_Ecto-sp13_S_contig5852.16336.1|Name=mRNA_Ecto-sp13_S_contig5852.16336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MQPAAKKKRLKRETTGCTVPRSFAHATIKCKQTPTYASAYKAMTLVSAKQ
ANRRIGTANWYRLKKDALVATIVLHHFAEEIQRFFRHVVVTTHDRDDDTN
TAVCPISLKPVAEIPCRHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVE
LREEDVLRIDPRLINQYKHRKELVACMAEDMALVQSVENELEEVFQEMVE
AAQEIPTRMEFRIVFDNLAEDFQQCHGDLIELDRERSVLTMKSLGDLVDG
DPNRRVHMSKKRERILRHFLKTQT*
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mRNA from alignment at Ecto-sp13_S_contig5852:1619..2443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5852.16336.1 ID=mRNA_Ecto-sp13_S_contig5852.16336.1|Name=mRNA_Ecto-sp13_S_contig5852.16336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:1619..2443+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCGGCTGCAAAAAAGAAAAGGCTGAAACGGGAAACGACCGGGTG
CACCGTCCCGCGATCGTTTGCGCACGCAACCATCAAATGCAAGCAAACGC
CAACGTACGCCTCCGCCTACAAGGCCATGACCCTCGTCTCGGCCAAGCAA
GCAAACAGGAGGATCGGTACAGCGAACTGGTACCGTCTGAAGAAGGACGC
CCTGGTCGCCACGATCGTCCTTCACCACTTCGCTGAGGAAATACAGAGGT
TTTTCAGACACGTCGTCGTCACGACACACGACAGGGACGACGACACAAAC
ACGGCAGTGTGTCCGATATCGTTAAAGCCGGTGGCAGAGATACCCTGCCG
CCACAGATTCAGGCACGGCAACATCTGGTTCAACAAGGAGATCCTCGCAC
AGTACATGCGCAAGACAAGCGATTTCATCAACCCGGTCACGAGAGTGGAG
CTTCGGGAGGAAGACGTCCTGAGAATTGATCCGCGACTGATCAATCAATA
CAAACACAGGAAAGAGCTCGTGGCTTGCATGGCTGAAGACATGGCCCTCG
TCCAGAGCGTCGAGAACGAGCTGGAGGAAGTTTTTCAGGAAATGGTGGAG
GCCGCCCAGGAGATACCGACCAGAATGGAATTCAGAATCGTCTTCGACAA
CCTTGCGGAGGATTTCCAGCAATGCCACGGTGATCTCATTGAACTCGATC
GCGAGAGGTCGGTCCTCACGATGAAATCTCTCGGAGATCTTGTCGACGGC
GATCCCAATCGACGCGTGCACATGTCTAAGAAACGAGAGAGAATTCTGCG
GCACTTTTTGAAAACACAAACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5852:1619..2443+

>mRNA_Ecto-sp13_S_contig5852.16336.1 ID=mRNA_Ecto-sp13_S_contig5852.16336.1|Name=mRNA_Ecto-sp13_S_contig5852.16336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:1619..2443+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCGGCTGCAAAAAAGAAAAGGCTGAAACGGGAAACGACCGGGTG
CACCGTCCCGCGATCGTTTGCGCACGCAACCATCAAATGCAAGCAAACGC
CAACGTACGCCTCCGCCTACAAGGCCATGACCCTCGTCTCGGCCAAGCAA
GCAAACAGGAGGATCGGTACAGCGAACTGGTACCGTCTGAAGAAGGACGC
CCTGGTCGCCACGATCGTCCTTCACCACTTCGCTGAGGAAATACAGAGGT
TTTTCAGACACGTCGTCGTCACGACACACGACAGGGACGACGACACAAAC
ACGGCAGTGTGTCCGATATCGTTAAAGCCGGTGGCAGAGATACCCTGCCG
CCACAGATTCAGGCACGGCAACATCTGGTTCAACAAGGAGATCCTCGCAC
AGTACATGCGCAAGACAAGCGATTTCATCAACCCGGTCACGAGAGTGGAG
CTTCGGGAGGAAGACGTCCTGAGAATTGATCCGCGACTGATCAATCAATA
CAAACACAGGAAAGAGCTCGTGGCTTGCATGGCTGAAGACATGGCCCTCG
TCCAGAGCGTCGAGAACGAGCTGGAGGAAGTTTTTCAGGAAATGGTGGAG
GCCGCCCAGGAGATACCGACCAGAATGGAATTCAGAATCGTCTTCGACAA
CCTTGCGGAGGATTTCCAGCAATGCCACGGTGATCTCATTGAACTCGATC
GCGAGAGGTCGGTCCTCACGATGAAATCTCTCGGAGATCTTGTCGACGGC
GATCCCAATCGACGCGTGCACATGTCTAAGAAACGAGAGAGAATTCTGCG
GCACTTTTTGAAAACACAAACATGA
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